Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002008

Physical Location & Seq

Genomic Coordinates Forward (+)

5055634 .. 5058586

Gene Structure 2953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g07020.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGAAAAGGATGGGAATGAAGGACAAGAAGAAGACCCATAAGAACAAGAAGGTTGCCCAGCCAAATTTGGAGCTTGTTGAAAAGGATAAAAAATTAGGATCTGCAGAGATTAGAAAGAGAAAAAGGGCAAAGGAAAGCGATGCTGATTCTCGAAGGGTTGTTCAAGTCTCTATTGAAGTAGATAATTCAGCCAAACCAGCCAAAGATAAGAAAAAGGCAAAACTAACGAATAAAAGGAAAATAAAGAATGTGAAGAACAATGAAGCTATGGAAGGCAAGAATGATCATCCAAATACAGACACTGATGACAATTTTTATGAAATAAATGATGATGGAGTTGCCGATCAGAGCCCATTTGAAAATCAGGAAGAGATTGAAATTGGTGAAGTGCTCACTGAGGCTGGTAAGTCAAAGAAAGCTAAGAAAAAGAAAAAGAAGGATAGTAATTCGTTAGAGTTTGTGAAGTCACTTGAAAAGGAAGTAGAAGCTAGTCAGGAGAACAGCTCAAAAGGGATATCAGGTGTACCCAAGAAGGCTTCAAGAAAGAAAAAGAAGGATCTTGATTCGTCAAAGTCTAAGAAGACATTGGAAAGGGAAGTAGAAGCCGATCAGGCTGATGTTTTCCTTATTTCTTCTGGGGATGAGGACTCTTCGAAAGGAATGAAAAAATGGATTATGGAATACCATCAAAGTAGACCTGGGTTGAAGGTACTGCAGCAAAGAATTGATCAGTTTATGGTTGAACATGATGAAAAACTGGAACAGGAAAAGAAAGAGAAAGAAGCCCGTGCTGCAGACGGAGGATGGACAGTTGTCGTACATCATAAAGGAAGGAAGAAGACCACGGATGCTGAGAGTGGAATTACAGTAGGATCTGTTGCCCAGGCTGCTTTGGAGGACAAGGTGGCCAAGAAGAAGCGCACAGAAGTTGCTGGGCTAGATTTTTACCGGTTCCAAAGGAAAGAAGCTCAGAGAAACGAAATTATGATGCTCCAGAGCAAATTTGAGCAAGATAAAAAGCGGATACAGCAGTTAAGAGCAGCTAGGAAGTTTCGACCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRP7

Protein Analysis

355

Amino Acids

40.5

Weight (kDa)

9.69

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38720 AT5G38720 AT5G38720
fragaria_vesca	FvH4_6g45790 FvH4_6g45790 FvH4_6g45790 FvH4_6g45790
malus_domestica	MD09G1079700.v1.1 MD17G1070200.v1.1
prunus_persica	Prupe.3G244000_v2.0.a1
pyrus_communis	pycom09g00650 pycom17g07020
rosa_chinensis	RchiOBHm_Chr2g0163971
rosa_laevigata	RLG00000000862 RLG00000001697 RLG00000008129 RLG00000008131 RLG00000013806 RLG00000014188 RLG00000021430
rosa_multiflora	Rmu_sc0002577.1_g000001 Rmu_sc0028598.1_g000001 Rmu_ssc0000432.1_g000022
rosa_roxburghii	Rroxscaffold_1G00074010 Rroxscaffold_2G00086880 Rroxscaffold_5G00353940
rosa_rugosa	Rorug02G0505300 Rorug02G0505400 Rorug02G0505500 Rorug02G0505600 Rorug02G0505700 Rorug02G0505800 Rorug04G0195700
rosa_samantha	Rh2AG391800 Rh2AG573900 Rh2BG584700 Rh2CG555600 Rh2DG594000 Rh4AG031000 Rh5BG452800 Rh6AG080600 Rh6CG040800 Rh6CG095900 Rh6DG018800
rosa_wichuraiana	Rw2G047470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	694
AciI	CCGC	1 cut(s)	1021
AclWI	GGATC	3 cut(s)	106, 564, 880
AcoI	YGGCCR	1 cut(s)	906
AcsI	RAATTY	2 cut(s)	64, 1001
AfaI	GTAC	3 cut(s)	525, 711, 819
AgeI	ACCGGT	1 cut(s)	948
AgsI	TTSAA	9 cut(s)	80, 164, 176, 359, 377, 473, 540, 706, 743
AjnI	CCWGG	2 cut(s)	697, 882
AluBI	AGCT	7 cut(s)	73, 266, 419, 488, 504, 968, 1043
AluI	AGCT	7 cut(s)	73, 266, 419, 488, 504, 968, 1043
Alw21I	GWGCWC	1 cut(s)	393
Alw26I	GTCTC	1 cut(s)	172
AlwI	GGATC	3 cut(s)	106, 564, 880
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	1 cut(s)	906
ApeKI	GCWGC	4 cut(s)	715, 791, 887, 1040
ApoI	RAATTY	2 cut(s)	64, 1001
AsiGI	ACCGGT	1 cut(s)	948
AspLEI	GCGC	1 cut(s)	921
AsuHPI	GGTGA	1 cut(s)	395
AsuII	TTCGAA	1 cut(s)	653
BaeI	ACNNNNGTAYC	2 cut(s)	1016, 1049
BalI	TGGCCA	1 cut(s)	908
BanII	GRGCYC	1 cut(s)	353
BbsI	GAAGAC	3 cut(s)	38, 587, 845
Bbv12I	GWGCWC	1 cut(s)	393
BbvI	GCAGC	4 cut(s)	727, 778, 874, 1052
BccI	CCATC	4 cut(s)	4, 326, 693, 798
BciT130I	CCWGG	2 cut(s)	699, 884
BciVI	GTATCC	1 cut(s)	1017
BclI	TGATCA	2 cut(s)	283, 727
BcoDI	GTCTC	1 cut(s)	172
BfaI	CTAG	3 cut(s)	489, 938, 1044
BfmI	CTRYAG	3 cut(s)	102, 713, 792
BfuI	GTATCC	1 cut(s)	1017
BglI	GCCNNNNNGGC	1 cut(s)	611
BisI	GCNGC	4 cut(s)	716, 792, 888, 1041
BlsI	GCNGC	4 cut(s)	717, 793, 889, 1042
Bme1390I	CCNGG	2 cut(s)	699, 884
BmiI	GGNNCC	1 cut(s)	953
BmrFI	CCNGG	2 cut(s)	699, 884
BmsI	GCATC	3 cut(s)	130, 838, 978
BoxI	GACNNNNGTC	1 cut(s)	812
BpiI	GAAGAC	3 cut(s)	38, 587, 845
BplI	GAGNNNNNCTC	2 cut(s)	488, 520
BpmI	CTGGAG	1 cut(s)	977
Bpu14I	TTCGAA	1 cut(s)	653
BsaJI	CCNNGG	3 cut(s)	698, 843, 882
BsaWI	WCCGGW	1 cut(s)	948
Bse118I	RCCGGY	1 cut(s)	948
Bse1I	ACTGG	1 cut(s)	762
BseBI	CCWGG	2 cut(s)	699, 884
BseDI	CCNNGG	3 cut(s)	698, 843, 882
BseGI	GGATG	5 cut(s)	15, 286, 646, 809, 853
BseMII	CTCAG	3 cut(s)	387, 843, 983
BseNI	ACTGG	1 cut(s)	762
BseXI	GCAGC	4 cut(s)	727, 778, 874, 1052
BseYI	CCCAGC	2 cut(s)	57, 932
BshFI	GGCC	1 cut(s)	908
BshTI	ACCGGT	1 cut(s)	948
BsiHKAI	GWGCWC	1 cut(s)	393
BsiSI	CCGG	1 cut(s)	949
BsmAI	GTCTC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	908
Bsp119I	TTCGAA	1 cut(s)	653
Bsp1286I	GDGCHC	2 cut(s)	353, 393
Bsp143I	GATC	7 cut(s)	98, 283, 343, 556, 607, 727, 872
BspACI	CCGC	1 cut(s)	1021
BspANI	GGCC	1 cut(s)	908
BspCNI	CTCAG	3 cut(s)	388, 844, 982
BspLI	GGNNCC	1 cut(s)	953
BspMAI	CTGCAG	3 cut(s)	106, 717, 796
BspPI	GGATC	3 cut(s)	106, 564, 880
BspT104I	TTCGAA	1 cut(s)	653
BsrFI	RCCGGY	1 cut(s)	948
BsrI	ACTGG	1 cut(s)	762
BssAI	RCCGGY	1 cut(s)	948
BssECI	CCNNGG	3 cut(s)	698, 843, 882
BssMI	GATC	7 cut(s)	98, 283, 343, 556, 607, 727, 872
Bst2UI	CCWGG	2 cut(s)	699, 884
Bst4CI	ACNGT	2 cut(s)	811, 868
Bst6I	CTCTTC	2 cut(s)	363, 655
BstBI	TTCGAA	1 cut(s)	653
BstDEI	CTNAG	5 cut(s)	396, 420, 576, 852, 969
BstDSI	CCRYGG	1 cut(s)	843
BstF5I	GGATG	5 cut(s)	15, 286, 646, 809, 853
BstHHI	GCGC	1 cut(s)	921
BstKTI	GATC	7 cut(s)	101, 286, 346, 559, 610, 730, 875
BstMAI	GTCTC	1 cut(s)	172
BstMBI	GATC	7 cut(s)	98, 283, 343, 556, 607, 727, 872
BstMWI	GCNNNNNNNGC	5 cut(s)	197, 611, 791, 887, 1027
BstNI	CCWGG	2 cut(s)	699, 884
BstPAI	GACNNNNGTC	1 cut(s)	812
BstSCI	CCNGG	2 cut(s)	697, 882
BstSFI	CTRYAG	3 cut(s)	102, 713, 792
BstV1I	GCAGC	4 cut(s)	727, 778, 874, 1052
BstV2I	GAAGAC	3 cut(s)	38, 587, 845
BstX2I	RGATCY	3 cut(s)	98, 556, 872
BstYI	RGATCY	3 cut(s)	98, 556, 872
BsuI	GTATCC	1 cut(s)	1017
BsuRI	GGCC	1 cut(s)	908
BtgI	CCRYGG	1 cut(s)	843
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	5 cut(s)	15, 286, 646, 809, 853
BtsIMutI	CAGTG	2 cut(s)	300, 393
CaiI	CAGNNNCTG	1 cut(s)	302
CfoI	GCGC	1 cut(s)	921
Cfr10I	RCCGGY	1 cut(s)	948
Csp6I	GTAC	3 cut(s)	524, 710, 818
CspAI	ACCGGT	1 cut(s)	948
CviAII	CATG	1 cut(s)	746
CviQI	GTAC	3 cut(s)	524, 710, 818
DdeI	CTNAG	5 cut(s)	396, 420, 576, 852, 969
DpnI	GATC	7 cut(s)	100, 285, 345, 558, 609, 729, 874
DpnII	GATC	7 cut(s)	98, 283, 343, 556, 607, 727, 872
EaeI	YGGCCR	1 cut(s)	906
Eam1104I	CTCTTC	2 cut(s)	363, 655
EarI	CTCTTC	2 cut(s)	363, 655
Eco24I	GRGCYC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	516
EcoRII	CCWGG	2 cut(s)	697, 882
EcoRV	GATATC	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	353
FaeI	CATG	1 cut(s)	749
FaiI	YATR	8 cut(s)	39, 269, 318, 677, 737, 747, 825, 986
FatI	CATG	1 cut(s)	745
FbaI	TGATCA	2 cut(s)	283, 727
FblI	GTMKAC	1 cut(s)	694
Fnu4HI	GCNGC	4 cut(s)	716, 792, 888, 1041
FokI	GGATG	5 cut(s)	22, 273, 653, 816, 860
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	4 cut(s)	716, 792, 888, 1041
FspBI	CTAG	3 cut(s)	489, 938, 1044
GlaI	GCGC	1 cut(s)	920
GluI	GCNGC	4 cut(s)	716, 792, 888, 1041
GsaI	CCCAGC	2 cut(s)	61, 936
GsuI	CTGGAG	1 cut(s)	977
HaeIII	GGCC	1 cut(s)	908
HapII	CCGG	1 cut(s)	949
HhaI	GCGC	1 cut(s)	921
Hin1II	CATG	1 cut(s)	749
Hin6I	GCGC	1 cut(s)	919
HinP1I	GCGC	1 cut(s)	919
HinfI	GANTC	3 cut(s)	146, 563, 647
HpaII	CCGG	1 cut(s)	949
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	2 cut(s)	524, 695
Hpy188I	TCNGA	2 cut(s)	348, 972
Hpy188III	TCNNGA	6 cut(s)	150, 365, 494, 540, 560, 994
Hpy8I	GTNNAC	2 cut(s)	524, 695
HpyAV	CCTTC	9 cut(s)	13, 43, 147, 266, 430, 526, 547, 700, 825
HpyCH4III	ACNGT	2 cut(s)	811, 868
HpyCH4V	TGCA	3 cut(s)	104, 715, 794
HpyF10VI	GCNNNNNNNGC	5 cut(s)	197, 611, 791, 887, 1027
HpyF3I	CTNAG	5 cut(s)	396, 420, 576, 852, 969
Hsp92II	CATG	1 cut(s)	749
HspAI	GCGC	1 cut(s)	919
Ksp22I	TGATCA	2 cut(s)	283, 727
Kzo9I	GATC	7 cut(s)	98, 283, 343, 556, 607, 727, 872
LmnI	GCTCC	2 cut(s)	70, 996
Lsp1109I	GCAGC	4 cut(s)	727, 778, 874, 1052
LweI	GCATC	3 cut(s)	130, 838, 978
MaeI	CTAG	3 cut(s)	489, 938, 1044
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	7 cut(s)	100, 285, 345, 558, 609, 729, 874
MboI	GATC	7 cut(s)	98, 283, 343, 556, 607, 727, 872
MflI	RGATCY	3 cut(s)	98, 556, 872
MhlI	GDGCHC	2 cut(s)	353, 393
MlsI	TGGCCA	1 cut(s)	908
MluNI	TGGCCA	1 cut(s)	908
MlyI	GAGTC	1 cut(s)	641
MnlI	CCTC	4 cut(s)	391, 637, 794, 889
Mox20I	TGGCCA	1 cut(s)	908
MscI	TGGCCA	1 cut(s)	908
MseI	TTAA	1 cut(s)	1034
Msp20I	TGGCCA	1 cut(s)	908
MspI	CCGG	1 cut(s)	949
MspR9I	CCNGG	2 cut(s)	699, 884
MvaI	CCWGG	2 cut(s)	699, 884
MwoI	GCNNNNNNNGC	5 cut(s)	197, 611, 791, 887, 1027
NdeII	GATC	7 cut(s)	98, 283, 343, 556, 607, 727, 872
NlaIII	CATG	1 cut(s)	749
NlaIV	GGNNCC	1 cut(s)	953
NmuCI	GTSAC	1 cut(s)	465
NspV	TTCGAA	1 cut(s)	653
PfeI	GAWTC	2 cut(s)	146, 563
PinAI	ACCGGT	1 cut(s)	948
PkrI	GCNGC	4 cut(s)	717, 793, 889, 1042
PleI	GAGTC	1 cut(s)	641
PpsI	GAGTC	1 cut(s)	641
PshAI	GACNNNNGTC	1 cut(s)	812
Psp6I	CCWGG	2 cut(s)	697, 882
PspFI	CCCAGC	2 cut(s)	57, 932
PspGI	CCWGG	2 cut(s)	697, 882
PspN4I	GGNNCC	1 cut(s)	953
PstI	CTGCAG	3 cut(s)	106, 717, 796
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	3 cut(s)	98, 556, 872
RsaI	GTAC	3 cut(s)	525, 711, 819
RsaNI	GTAC	3 cut(s)	524, 710, 818
SaqAI	TTAA	1 cut(s)	1034
SatI	GCNGC	4 cut(s)	716, 792, 888, 1041
Sau3AI	GATC	7 cut(s)	98, 283, 343, 556, 607, 727, 872
SchI	GAGTC	1 cut(s)	641
ScrFI	CCNGG	2 cut(s)	699, 884
SduI	GDGCHC	2 cut(s)	353, 393
SfaNI	GCATC	3 cut(s)	130, 838, 978
SfcI	CTRYAG	3 cut(s)	102, 713, 792
SfuI	TTCGAA	1 cut(s)	653
SsiI	CCGC	1 cut(s)	1021
SspMI	CTAG	3 cut(s)	489, 938, 1044
StyD4I	CCNGG	2 cut(s)	697, 882
TaaI	ACNGT	2 cut(s)	811, 868
TaqI	TCGA	3 cut(s)	151, 653, 1054
TfiI	GAWTC	2 cut(s)	146, 563
Tru1I	TTAA	1 cut(s)	1034
Tru9I	TTAA	1 cut(s)	1034
TscAI	CASTG	2 cut(s)	307, 400
TseFI	GTSAC	1 cut(s)	465
TseI	GCWGC	4 cut(s)	715, 791, 887, 1040
Tsp45I	GTSAC	1 cut(s)	465
TspDTI	ATGAA	6 cut(s)	17, 32, 276, 333, 677, 765
TspGWI	ACGGA	2 cut(s)	813, 860
TspRI	CASTG	2 cut(s)	307, 400
XapI	RAATTY	2 cut(s)	64, 1001
XmiI	GTMKAC	1 cut(s)	694
XspI	CTAG	3 cut(s)	489, 938, 1044

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.