Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0002008

Physical Location & Seq

Genomic Coordinates Forward (+)

485598 .. 488513

Gene Structure 2916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00650.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAGGACAAGAAGAAGACCCATAAGAGCAAGAAGGCTGCCCAGCCAAATTTGGAGATTGTTGAAAAGGATAAAATGTTAGGATCGGCAGAGATGAGAAAGAGAAAAAGGGCGAAGGAAAGCGATGCTGACTCTCAAAAGGTTGTCCAAGTCTCTGTTGAAGTAGATAATTCAGCCAAATCAGCCAAAGATAAGAAAAAGACAAAACTAACGAAGAAAAGGAAAATAAAGAATGCGAAGAATTATGTAGCTGTGGAAAGCGAGAATGATCACCCAAATACGGAGACTGATGGCGATTGTAATGAAATAAATGATGATGGAGTTGCCAATCAGAGCCGATTCGAAACTCAGGAAGAGATTGAAATTGGTGAAGTGTTCACTGAGGCTGGTAAGTCAAAGAAAGCTAAGAAAAAGAAAAAGAAGGATCGTAATCCATTAGAGTTTGTGAAGTCACTGGAAAAGGAAATAGAAGCTGGTCGGGAGATCTGCTCAAGAGGAATACCAAGCGTGTCCAAGAAAGCTTTGAAAAAGAAAAAGAGGGATCTTGATTCATCAAAGTCCACAAAGACAATGGAAACGGAAGTAGAAGCTGATCAGGCTGATGTTTACCTTATTTCTTCGGGGGATGAGGACTCTTCGAAAGGAATGAAAAAATGGGTTACGGAATACCATCAAAGTAGACCTGGATTGAAGGAACTGCAGCAAAGAATCGATCAGTTTATGGTTGAACATGATGAAAAACTGGAACAGGAAAAGAAAGAGAGAGAAGCCCGTGCTGCAGAGGGAGGATGGACAGTTGTAGTACATCATAAAGGAAGGAAGAAGACCACGGATGCTGAGAGTGGAATTACAGTAGGGTCTGTCGCCCAGGCTGCTTTGGAGGACAAGATGGCCAAGAAGAAACAAACTGAAGTTGTTGGGCTAGATTTTTACCGGTTCCAAAGGAAAGAAGCTCAGAGGAATGAAATTATGATGCTCCAGAGCAAGTTTGAGCAAGATAAAAAGCGGATACAGCAGTTAAGAGCGGCTAGGAAGTTTCGACCTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRP7

Protein Analysis

350

Amino Acids

39.96

Weight (kDa)

9.54

Isoelectric Point (pI)

42.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38720 AT5G38720 AT5G38720
fragaria_vesca	FvH4_6g45790 FvH4_6g45790 FvH4_6g45790 FvH4_6g45790
malus_domestica	MD09G1079700.v1.1 MD17G1070200.v1.1
prunus_persica	Prupe.3G244000_v2.0.a1
pyrus_communis	pycom09g00650 pycom17g07020
rosa_chinensis	RchiOBHm_Chr2g0163971
rosa_laevigata	RLG00000000862 RLG00000001697 RLG00000008129 RLG00000008131 RLG00000013806 RLG00000014188 RLG00000021430
rosa_multiflora	Rmu_sc0002577.1_g000001 Rmu_sc0028598.1_g000001 Rmu_ssc0000432.1_g000022
rosa_roxburghii	Rroxscaffold_1G00074010 Rroxscaffold_2G00086880 Rroxscaffold_5G00353940
rosa_rugosa	Rorug02G0505300 Rorug02G0505400 Rorug02G0505500 Rorug02G0505600 Rorug02G0505700 Rorug02G0505800 Rorug04G0195700
rosa_samantha	Rh2AG391800 Rh2AG573900 Rh2BG584700 Rh2CG555600 Rh2DG594000 Rh4AG031000 Rh5BG452800 Rh6AG080600 Rh6CG040800 Rh6CG095900 Rh6DG018800
rosa_wichuraiana	Rw2G047470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1025
AccI	GTMKAC	1 cut(s)	679
AciI	CCGC	2 cut(s)	1006, 1025
AclWI	GGATC	3 cut(s)	91, 432, 549
AcoI	YGGCCR	1 cut(s)	891
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	930
AfaI	GTAC	1 cut(s)	804
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgeI	ACCGGT	1 cut(s)	933
AgsI	TTSAA	6 cut(s)	65, 161, 362, 526, 691, 728
AjnI	CCWGG	2 cut(s)	682, 867
AluBI	AGCT	6 cut(s)	251, 404, 473, 521, 590, 953
AluI	AGCT	6 cut(s)	251, 404, 473, 521, 590, 953
Alw26I	GTCTC	2 cut(s)	157, 278
AlwI	GGATC	3 cut(s)	91, 432, 549
AoxI	GGCC	1 cut(s)	891
ApeKI	GCWGC	4 cut(s)	38, 700, 776, 872
ApoI	RAATTY	1 cut(s)	49
AsiGI	ACCGGT	1 cut(s)	933
AsuHPI	GGTGA	2 cut(s)	263, 380
AsuII	TTCGAA	2 cut(s)	342, 638
BaeI	ACNNNNGTAYC	2 cut(s)	1001, 1034
BalI	TGGCCA	1 cut(s)	893
BbsI	GAAGAC	2 cut(s)	23, 830
BbvI	GCAGC	4 cut(s)	25, 712, 763, 859
BccI	CCATC	5 cut(s)	284, 311, 678, 783, 883
BciT130I	CCWGG	2 cut(s)	684, 869
BciVI	GTATCC	1 cut(s)	1002
BclI	TGATCA	2 cut(s)	268, 592
BcoDI	GTCTC	2 cut(s)	157, 278
BfaI	CTAG	2 cut(s)	923, 1029
BfmI	CTRYAG	2 cut(s)	698, 777
BfuI	GTATCC	1 cut(s)	1002
BglII	AGATCT	1 cut(s)	483
BisI	GCNGC	5 cut(s)	39, 701, 777, 873, 1026
BlsI	GCNGC	5 cut(s)	40, 702, 778, 874, 1027
Bme1390I	CCNGG	2 cut(s)	684, 869
BmiI	GGNNCC	1 cut(s)	938
BmrFI	CCNGG	2 cut(s)	684, 869
BmsI	GCATC	3 cut(s)	115, 823, 963
BpiI	GAAGAC	2 cut(s)	23, 830
BplI	GAGNNNNNCTC	2 cut(s)	473, 505
BpmI	CTGGAG	1 cut(s)	962
Bpu14I	TTCGAA	2 cut(s)	342, 638
BpuEI	CTTGAG	1 cut(s)	475
Bsa29I	ATCGAT	1 cut(s)	711
BsaBI	GATNNNNATC	1 cut(s)	429
BsaJI	CCNNGG	2 cut(s)	828, 867
BsaWI	WCCGGW	1 cut(s)	933
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse118I	RCCGGY	1 cut(s)	933
Bse1I	ACTGG	2 cut(s)	459, 747
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	684, 869
BseCI	ATCGAT	1 cut(s)	711
BseDI	CCNNGG	2 cut(s)	828, 867
BseGI	GGATG	3 cut(s)	631, 794, 838
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMII	CTCAG	4 cut(s)	362, 372, 828, 968
BseNI	ACTGG	2 cut(s)	459, 747
BseXI	GCAGC	4 cut(s)	25, 712, 763, 859
BseYI	CCCAGC	1 cut(s)	42
BshFI	GGCC	1 cut(s)	893
BshTI	ACCGGT	1 cut(s)	933
BshVI	ATCGAT	1 cut(s)	711
BsiSI	CCGG	1 cut(s)	934
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	2 cut(s)	157, 278
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	893
Bsp119I	TTCGAA	2 cut(s)	342, 638
Bsp143I	GATC	7 cut(s)	83, 268, 424, 483, 541, 592, 712
BspACI	CCGC	2 cut(s)	1006, 1025
BspANI	GGCC	1 cut(s)	893
BspCNI	CTCAG	4 cut(s)	361, 373, 829, 967
BspDI	ATCGAT	1 cut(s)	711
BspLI	GGNNCC	1 cut(s)	938
BspMAI	CTGCAG	2 cut(s)	702, 781
BspPI	GGATC	3 cut(s)	91, 432, 549
BspT104I	TTCGAA	2 cut(s)	342, 638
BsrBI	CCGCTC	1 cut(s)	1025
BsrFI	RCCGGY	1 cut(s)	933
BsrI	ACTGG	2 cut(s)	459, 747
BssAI	RCCGGY	1 cut(s)	933
BssECI	CCNNGG	2 cut(s)	828, 867
BssMI	GATC	7 cut(s)	83, 268, 424, 483, 541, 592, 712
Bst2UI	CCWGG	2 cut(s)	684, 869
Bst4CI	ACNGT	2 cut(s)	796, 853
Bst6I	CTCTTC	2 cut(s)	348, 640
BstBI	TTCGAA	2 cut(s)	342, 638
BstDEI	CTNAG	5 cut(s)	348, 381, 405, 837, 954
BstDSI	CCRYGG	1 cut(s)	828
BstF5I	GGATG	3 cut(s)	631, 794, 838
BstKTI	GATC	7 cut(s)	86, 271, 427, 486, 544, 595, 715
BstMAI	GTCTC	2 cut(s)	157, 278
BstMBI	GATC	7 cut(s)	83, 268, 424, 483, 541, 592, 712
BstMWI	GCNNNNNNNGC	5 cut(s)	182, 596, 776, 872, 1012
BstNI	CCWGG	2 cut(s)	684, 869
BstSCI	CCNGG	2 cut(s)	682, 867
BstSFI	CTRYAG	2 cut(s)	698, 777
BstV1I	GCAGC	4 cut(s)	25, 712, 763, 859
BstV2I	GAAGAC	2 cut(s)	23, 830
BstX2I	RGATCY	2 cut(s)	483, 541
BstYI	RGATCY	2 cut(s)	483, 541
Bsu15I	ATCGAT	1 cut(s)	711
BsuI	GTATCC	1 cut(s)	1002
BsuRI	GGCC	1 cut(s)	893
BsuTUI	ATCGAT	1 cut(s)	711
BtgI	CCRYGG	1 cut(s)	828
BtgZI	GCGATG	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	631, 794, 838
BtsIMutI	CAGTG	2 cut(s)	378, 452
Cfr10I	RCCGGY	1 cut(s)	933
ClaI	ATCGAT	1 cut(s)	711
Csp6I	GTAC	1 cut(s)	803
CspAI	ACCGGT	1 cut(s)	933
CviAII	CATG	1 cut(s)	731
CviQI	GTAC	1 cut(s)	803
DdeI	CTNAG	5 cut(s)	348, 381, 405, 837, 954
DpnI	GATC	7 cut(s)	85, 270, 426, 485, 543, 594, 714
DpnII	GATC	7 cut(s)	83, 268, 424, 483, 541, 592, 712
EaeI	YGGCCR	1 cut(s)	891
Eam1104I	CTCTTC	2 cut(s)	348, 640
EarI	CTCTTC	2 cut(s)	348, 640
Eco57I	CTGAAG	1 cut(s)	930
EcoRII	CCWGG	2 cut(s)	682, 867
FaeI	CATG	1 cut(s)	734
FaiI	YATR	6 cut(s)	24, 246, 722, 732, 810, 971
FatI	CATG	1 cut(s)	730
FbaI	TGATCA	2 cut(s)	268, 592
FblI	GTMKAC	1 cut(s)	679
Fnu4HI	GCNGC	5 cut(s)	39, 701, 777, 873, 1026
FokI	GGATG	3 cut(s)	638, 801, 845
Fsp4HI	GCNGC	5 cut(s)	39, 701, 777, 873, 1026
FspBI	CTAG	2 cut(s)	923, 1029
GluI	GCNGC	5 cut(s)	39, 701, 777, 873, 1026
GsaI	CCCAGC	1 cut(s)	46
GsuI	CTGGAG	1 cut(s)	962
HaeIII	GGCC	1 cut(s)	893
HapII	CCGG	1 cut(s)	934
Hin1II	CATG	1 cut(s)	734
HindIII	AAGCTT	1 cut(s)	519
HinfI	GANTC	5 cut(s)	131, 339, 548, 632, 708
HpaII	CCGG	1 cut(s)	934
HphI	GGTGA	2 cut(s)	263, 380
Hpy166II	GTNNAC	4 cut(s)	378, 561, 607, 680
Hpy188I	TCNGA	2 cut(s)	333, 957
Hpy188III	TCNNGA	5 cut(s)	350, 479, 492, 545, 979
Hpy8I	GTNNAC	4 cut(s)	378, 561, 607, 680
HpyAV	CCTTC	5 cut(s)	28, 109, 415, 685, 810
HpyCH4III	ACNGT	2 cut(s)	796, 853
HpyCH4V	TGCA	2 cut(s)	700, 779
HpyF10VI	GCNNNNNNNGC	5 cut(s)	182, 596, 776, 872, 1012
HpyF3I	CTNAG	5 cut(s)	348, 381, 405, 837, 954
Hsp92II	CATG	1 cut(s)	734
Ksp22I	TGATCA	2 cut(s)	268, 592
Kzo9I	GATC	7 cut(s)	83, 268, 424, 483, 541, 592, 712
LmnI	GCTCC	1 cut(s)	981
Lsp1109I	GCAGC	4 cut(s)	25, 712, 763, 859
LweI	GCATC	3 cut(s)	115, 823, 963
MaeI	CTAG	2 cut(s)	923, 1029
MaeIII	GTNAC	2 cut(s)	450, 658
MalI	GATC	7 cut(s)	85, 270, 426, 485, 543, 594, 714
MbiI	CCGCTC	1 cut(s)	1025
MboI	GATC	7 cut(s)	83, 268, 424, 483, 541, 592, 712
MflI	RGATCY	2 cut(s)	483, 541
MlsI	TGGCCA	1 cut(s)	893
MluCI	AATT	6 cut(s)	49, 169, 241, 363, 846, 966
MluNI	TGGCCA	1 cut(s)	893
MlyI	GAGTC	2 cut(s)	125, 626
MnlI	CCTC	8 cut(s)	376, 488, 531, 622, 775, 779, 874, 951
Mox20I	TGGCCA	1 cut(s)	893
MscI	TGGCCA	1 cut(s)	893
MseI	TTAA	1 cut(s)	1019
Msp20I	TGGCCA	1 cut(s)	893
MspI	CCGG	1 cut(s)	934
MspR9I	CCNGG	2 cut(s)	684, 869
Mva1269I	GAATGC	1 cut(s)	238
MvaI	CCWGG	2 cut(s)	684, 869
MwoI	GCNNNNNNNGC	5 cut(s)	182, 596, 776, 872, 1012
NdeII	GATC	7 cut(s)	83, 268, 424, 483, 541, 592, 712
NlaIII	CATG	1 cut(s)	734
NlaIV	GGNNCC	1 cut(s)	938
NmuCI	GTSAC	1 cut(s)	450
NspV	TTCGAA	2 cut(s)	342, 638
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	3 cut(s)	339, 548, 708
PinAI	ACCGGT	1 cut(s)	933
PkrI	GCNGC	5 cut(s)	40, 702, 778, 874, 1027
PleI	GAGTC	2 cut(s)	125, 626
PpsI	GAGTC	2 cut(s)	125, 626
Psp6I	CCWGG	2 cut(s)	682, 867
PspFI	CCCAGC	1 cut(s)	42
PspGI	CCWGG	2 cut(s)	682, 867
PspN4I	GGNNCC	1 cut(s)	938
PstI	CTGCAG	2 cut(s)	702, 781
PsuI	RGATCY	2 cut(s)	483, 541
RsaI	GTAC	1 cut(s)	804
RsaNI	GTAC	1 cut(s)	803
SaqAI	TTAA	1 cut(s)	1019
SatI	GCNGC	5 cut(s)	39, 701, 777, 873, 1026
Sau3AI	GATC	7 cut(s)	83, 268, 424, 483, 541, 592, 712
SchI	GAGTC	2 cut(s)	125, 626
ScrFI	CCNGG	2 cut(s)	684, 869
SfaNI	GCATC	3 cut(s)	115, 823, 963
SfcI	CTRYAG	2 cut(s)	698, 777
SfuI	TTCGAA	2 cut(s)	342, 638
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	6 cut(s)	49, 169, 241, 363, 846, 966
SsiI	CCGC	2 cut(s)	1006, 1025
SspMI	CTAG	2 cut(s)	923, 1029
StyD4I	CCNGG	2 cut(s)	682, 867
TaaI	ACNGT	2 cut(s)	796, 853
TaqI	TCGA	4 cut(s)	342, 638, 711, 1039
TasI	AATT	6 cut(s)	49, 169, 241, 363, 846, 966
TatI	WGTACW	1 cut(s)	802
TauI	GCSGC	1 cut(s)	1028
TfiI	GAWTC	3 cut(s)	339, 548, 708
Tru1I	TTAA	1 cut(s)	1019
Tru9I	TTAA	1 cut(s)	1019
TscAI	CASTG	2 cut(s)	385, 459
TseFI	GTSAC	1 cut(s)	450
TseI	GCWGC	4 cut(s)	38, 700, 776, 872
Tsp45I	GTSAC	1 cut(s)	450
TspDTI	ATGAA	6 cut(s)	17, 318, 540, 662, 750, 978
TspGWI	ACGGA	4 cut(s)	296, 593, 677, 845
TspRI	CASTG	2 cut(s)	385, 459
XapI	RAATTY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	568
XmiI	GTMKAC	1 cut(s)	679
XspI	CTAG	2 cut(s)	923, 1029

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.