Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002008

Physical Location & Seq

Genomic Coordinates Reverse (-)

63719883 .. 63720632

Gene Structure 750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0505700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGCGCGATGGCGCTCTGACCTCCAGCGACGACCTCGAAAGCATCTCAGCACGCGGCCGCAGCGACGATTCCGACTCATACAATCCATTCCTAAACTTCAAGTTCGAGTTTGTCTTCAGTGGAGACGACGTGGATGAGGTGGGTTCTGGCGAGCTGGGCATGGGCCAAGCCCTATTCGGTGAGCAGGATTTTGTTGTCTGGGGTGGTGGTGTAGGCAGCCATGGTTGTAAAGCACAAGAAAACAAAGACGAAGATGATGAAGATGAAGCGCGTTGCTTCTTGGAGGAAGACGAGAAATCTGGTTTTACTGGTGAAGGCGAATTGAATTTTGGTTTTGATGATTTGGGTGGTGAAGGTGAAGGGAAATATGGTTTTGATGGTTTGGGTGGTGGGGTGATGCCTCTGGAGAGTACAGAGAGTGGGTTTGGGGAGATTGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRP7

Protein Analysis

147

Amino Acids

15.73

Weight (kDa)

4.05

Isoelectric Point (pI)

33.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38720 AT5G38720 AT5G38720
fragaria_vesca	FvH4_6g45790 FvH4_6g45790 FvH4_6g45790 FvH4_6g45790
malus_domestica	MD09G1079700.v1.1 MD17G1070200.v1.1
prunus_persica	Prupe.3G244000_v2.0.a1
pyrus_communis	pycom09g00650 pycom17g07020
rosa_chinensis	RchiOBHm_Chr2g0163971
rosa_laevigata	RLG00000000862 RLG00000001697 RLG00000008129 RLG00000008131 RLG00000013806 RLG00000014188 RLG00000021430
rosa_multiflora	Rmu_sc0002577.1_g000001 Rmu_sc0028598.1_g000001 Rmu_ssc0000432.1_g000022
rosa_roxburghii	Rroxscaffold_1G00074010 Rroxscaffold_2G00086880 Rroxscaffold_5G00353940
rosa_rugosa	Rorug02G0505300 Rorug02G0505400 Rorug02G0505500 Rorug02G0505600 Rorug02G0505700 Rorug02G0505800 Rorug04G0195700
rosa_samantha	Rh2AG391800 Rh2AG573900 Rh2BG584700 Rh2CG555600 Rh2DG594000 Rh4AG031000 Rh5BG452800 Rh6AG080600 Rh6CG040800 Rh6CG095900 Rh6DG018800
rosa_wichuraiana	Rw2G047470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	6, 54, 271
AciI	CCGC	2 cut(s)	54, 58
AcoI	YGGCCR	1 cut(s)	55
AcsI	RAATTY	1 cut(s)	325
AcuI	CTGAAG	1 cut(s)	100
AfaI	GTAC	1 cut(s)	412
AgsI	TTSAA	2 cut(s)	100, 325
AjiI	CACGTC	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	117
AoxI	GGCC	2 cut(s)	55, 163
ApeKI	GCWGC	2 cut(s)	60, 216
ApoI	RAATTY	1 cut(s)	325
AspLEI	GCGC	3 cut(s)	6, 14, 271
AspS9I	GGNCC	1 cut(s)	163
AsuHPI	GGTGA	5 cut(s)	191, 323, 362, 368, 406
BbsI	GAAGAC	2 cut(s)	106, 294
BbvI	GCAGC	2 cut(s)	72, 228
BccI	CCATC	2 cut(s)	2, 371
BcoDI	GTCTC	1 cut(s)	117
BfoI	RGCGCY	1 cut(s)	15
BisI	GCNGC	4 cut(s)	55, 58, 61, 217
BlsI	GCNGC	4 cut(s)	56, 59, 62, 218
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	163
BmsI	GCATC	2 cut(s)	51, 387
BpiI	GAAGAC	2 cut(s)	106, 294
BpmI	CTGGAG	2 cut(s)	7, 425
BsaJI	CCNNGG	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bse1I	ACTGG	1 cut(s)	313
BseDI	CCNNGG	1 cut(s)	220
BseGI	GGATG	1 cut(s)	139
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	1 cut(s)	313
BseX3I	CGGCCG	1 cut(s)	55
BseXI	GCAGC	2 cut(s)	72, 228
BseYI	CCCAGC	1 cut(s)	154
Bsh1236I	CGCG	3 cut(s)	6, 54, 271
Bsh1285I	CGRYCG	1 cut(s)	58
BshFI	GGCC	2 cut(s)	57, 165
BsiEI	CGRYCG	1 cut(s)	58
BsmAI	GTCTC	1 cut(s)	117
BsmBI	CGTCTC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	57, 165
Bsp19I	CCATGG	1 cut(s)	220
BspACI	CCGC	2 cut(s)	54, 58
BspANI	GGCC	2 cut(s)	57, 165
BspCNI	CTCAG	1 cut(s)	59
BspFNI	CGCG	3 cut(s)	6, 54, 271
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	52, 152
BstDEI	CTNAG	1 cut(s)	46
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	139
BstFNI	CGCG	3 cut(s)	6, 54, 271
BstH2I	RGCGCY	1 cut(s)	15
BstHHI	GCGC	3 cut(s)	6, 14, 271
BstMAI	GTCTC	1 cut(s)	117
BstMCI	CGRYCG	1 cut(s)	58
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 156
BstUI	CGCG	3 cut(s)	6, 54, 271
BstV1I	GCAGC	2 cut(s)	72, 228
BstV2I	GAAGAC	2 cut(s)	106, 294
BstZI	CGGCCG	1 cut(s)	55
BsuRI	GGCC	2 cut(s)	57, 165
BtgI	CCRYGG	1 cut(s)	220
BtgZI	GCGATG	1 cut(s)	21
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	124
Cac8I	GCNNGC	2 cut(s)	52, 152
CciNI	GCGGCCGC	1 cut(s)	55
CfoI	GCGC	3 cut(s)	6, 14, 271
Cfr13I	GGNCC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	2 cut(s)	160, 221
CviJI	RGCY	5 cut(s)	57, 154, 165, 170, 219
CviKI_1	RGCY	5 cut(s)	57, 154, 165, 170, 219
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	55
EagI	CGGCCG	1 cut(s)	55
EclXI	CGGCCG	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	220
Eco52I	CGGCCG	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	220
ErhI	CCWWGG	1 cut(s)	220
Esp3I	CGTCTC	1 cut(s)	117
FaeI	CATG	2 cut(s)	163, 224
FaiI	YATR	4 cut(s)	79, 161, 222, 369
FatI	CATG	2 cut(s)	159, 220
Fnu4HI	GCNGC	4 cut(s)	55, 58, 61, 217
FokI	GGATG	1 cut(s)	146
Fsp4HI	GCNGC	4 cut(s)	55, 58, 61, 217
GlaI	GCGC	3 cut(s)	5, 13, 270
GluI	GCNGC	4 cut(s)	55, 58, 61, 217
GsaI	CCCAGC	1 cut(s)	158
GsuI	CTGGAG	2 cut(s)	7, 425
HaeII	RGCGCY	1 cut(s)	15
HaeIII	GGCC	2 cut(s)	57, 165
HhaI	GCGC	3 cut(s)	6, 14, 271
Hin1II	CATG	2 cut(s)	163, 224
Hin6I	GCGC	3 cut(s)	4, 12, 269
HinP1I	GCGC	3 cut(s)	4, 12, 269
HinfI	GANTC	2 cut(s)	68, 74
HphI	GGTGA	5 cut(s)	191, 323, 362, 368, 406
Hpy188I	TCNGA	2 cut(s)	18, 73
Hpy188III	TCNNGA	1 cut(s)	404
Hpy99I	CGWCG	3 cut(s)	32, 68, 131
HpyAV	CCTTC	3 cut(s)	308, 347, 353
HpyCH4IV	ACGT	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 156
HpyF3I	CTNAG	1 cut(s)	46
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	163, 224
HspAI	GCGC	3 cut(s)	4, 12, 269
LpnPI	CCDG	8 cut(s)	37, 132, 140, 170, 184, 285, 294, 389
Lsp1109I	GCAGC	2 cut(s)	72, 228
LweI	GCATC	2 cut(s)	51, 387
MaeII	ACGT	1 cut(s)	129
MboII	GAAGA	4 cut(s)	106, 263, 272, 299
MluCI	AATT	2 cut(s)	320, 325
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	31, 44, 130, 277, 411
MvnI	CGCG	3 cut(s)	6, 54, 271
MwoI	GCNNNNNNNGC	2 cut(s)	60, 156
NcoI	CCATGG	1 cut(s)	220
NlaIII	CATG	2 cut(s)	163, 224
NotI	GCGGCCGC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	68
PkrI	GCNGC	4 cut(s)	56, 59, 62, 218
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	163
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SatI	GCNGC	4 cut(s)	55, 58, 61, 217
Sau96I	GGNCC	1 cut(s)	163
SchI	GAGTC	1 cut(s)	68
SetI	ASST	6 cut(s)	23, 36, 132, 141, 156, 358
SfaNI	GCATC	2 cut(s)	51, 387
Sse9I	AATT	2 cut(s)	320, 325
SsiI	CCGC	2 cut(s)	54, 58
StyI	CCWWGG	1 cut(s)	220
TaiI	ACGT	1 cut(s)	132
TaqI	TCGA	2 cut(s)	36, 105
TasI	AATT	2 cut(s)	320, 325
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	2 cut(s)	57, 60
TfiI	GAWTC	1 cut(s)	68
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	2 cut(s)	60, 216
TspDTI	ATGAA	2 cut(s)	273, 279
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.