Rh2AG391800

Ribosome production factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002008
Physical Location & Seq
Reverse (-)
58722834 .. 58726548
3715 bp
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UTR
Exon/CDS
Intron
Rh2AG391800.1

Sequence Viewer

Length: 705 bp
ATGGGAGTCAAGGACAAGAAGAAGAACAAGGAGCTTGCCCAGAGAAATTTGGAGCCTGTTGAAAAGGATAAAAGTTCAGGACCTTCAGAGATGAGAAAGAGAAAAAGAGAGAAGAAAACAATGGTGATTCGAGAAAAGTTGTTCAGATCTCTATTGAAGAGGGGTCCTGCTTTTATAGAGGAACTACTTTCGGTGATCCCAAATGCACAGTACTATAAAAGAGGCACTTATGACTTGAAAAAGATTATAGAGTATGCAAATAAAAAGGAATTCACTTCTTTAATTGTTGTTCATACCAATCGCCGAGAACCAGATGCTCTCCTAATTATTGGCTTACCTAATGGACCTACTGCCCATTTTAAGCTCTCAAAGCTTGTTTTACGGAAGGATATCAAGAATCATGGAAATCCAACCAGTCATGAGCCTGAGCTTGTATTAAACAACTTTACAACACGCCTTGGTCATCGTATTGGGAGTCTGCGGCATGGGACATTTGATCCTAGAGGCGGGGAGTTTGAGTGGGTTCACAAGCTGCTACAACATTTAAATATGCTTTTGATTACAAACCATCCGGCATCAACTGTCAACATGAGCAATACTTATGTACTTTTTCGAACTTATGCTCCTGTGCATTTCAGGATTTTGAATGGTGAAGATGTAGATATAGAGGAAATAGTTCTTCACACTCCAATATCCAAATCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Brix

Protein Analysis

234

Amino Acids

27.01

Weight (kDa)

9.93

Isoelectric Point (pI)

38.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Brix PF04427 57 - 209 2.9e-16 Brix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 481, 507
AclWI GGATC 2 cut(s) 190, 491
AcsI RAATTY 2 cut(s) 46, 269
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 2 cut(s) 212, 606
AfiI CCNNNNNNNGG 1 cut(s) 506
AgsI TTSAA 4 cut(s) 62, 157, 238, 646
AloI GAACNNNNNNTCC 2 cut(s) 607, 639
AluBI AGCT 5 cut(s) 34, 364, 373, 430, 532
AluI AGCT 5 cut(s) 34, 364, 373, 430, 532
AlwI GGATC 2 cut(s) 190, 491
ApeKI GCWGC 1 cut(s) 532
ApoI RAATTY 2 cut(s) 46, 269
Asp700I GAANNNNTTC 1 cut(s) 675
AspS9I GGNCC 3 cut(s) 80, 164, 344
AsuHPI GGTGA 3 cut(s) 136, 205, 662
AsuII TTCGAA 1 cut(s) 613
AvaII GGWCC 3 cut(s) 80, 164, 344
BbvI GCAGC 1 cut(s) 519
BccI CCATC 1 cut(s) 576
BfaI CTAG 2 cut(s) 501, 703
BglII AGATCT 1 cut(s) 146
BisI GCNGC 2 cut(s) 482, 533
BlsI GCNGC 2 cut(s) 483, 534
BmcAI AGTACT 1 cut(s) 212
Bme18I GGWCC 3 cut(s) 80, 164, 344
BmgT120I GGNCC 3 cut(s) 80, 164, 344
BmiI GGNNCC 2 cut(s) 54, 165
BmsI GCATC 2 cut(s) 304, 584
Bpu10I CCTNAGC 1 cut(s) 426
Bpu14I TTCGAA 1 cut(s) 613
BsaJI CCNNGG 1 cut(s) 457
BsaXI ACNNNNNCTCC 4 cut(s) 503, 533, 607, 637
Bsc4I CCNNNNNNNGG 1 cut(s) 506
Bse1I ACTGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 457
BseGI GGATG 1 cut(s) 568
BseLI CCNNNNNNNGG 1 cut(s) 506
BseMII CTCAG 1 cut(s) 417
BseNI ACTGG 1 cut(s) 414
BseXI GCAGC 1 cut(s) 519
BsiSI CCGG 1 cut(s) 572
BslFI GGGAC 1 cut(s) 502
BslI CCNNNNNNNGG 1 cut(s) 506
BsmFI GGGAC 1 cut(s) 502
Bsp119I TTCGAA 1 cut(s) 613
Bsp143I GATC 3 cut(s) 146, 195, 496
BspACI CCGC 2 cut(s) 481, 507
BspCNI CTCAG 1 cut(s) 418
BspHI TCATGA 1 cut(s) 418
BspLI GGNNCC 2 cut(s) 54, 165
BspPI GGATC 2 cut(s) 190, 491
BspT104I TTCGAA 1 cut(s) 613
BsrI ACTGG 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 457
BssMI GATC 3 cut(s) 146, 195, 496
BssT1I CCWWGG 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 210, 583
Bst6I CTCTTC 1 cut(s) 152
BstBI TTCGAA 1 cut(s) 613
BstC8I GCNNGC 1 cut(s) 36
BstDEI CTNAG 1 cut(s) 426
BstF5I GGATG 1 cut(s) 568
BstKTI GATC 3 cut(s) 149, 198, 499
BstMBI GATC 3 cut(s) 146, 195, 496
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstV1I GCAGC 1 cut(s) 519
BstX2I RGATCY 1 cut(s) 146
BstYI RGATCY 1 cut(s) 146
BtsCI GGATG 1 cut(s) 568
Cac8I GCNNGC 1 cut(s) 36
CciI TCATGA 1 cut(s) 418
Cfr13I GGNCC 3 cut(s) 80, 164, 344
Csp6I GTAC 2 cut(s) 211, 605
CviAII CATG 4 cut(s) 401, 419, 485, 589
CviJI RGCY 8 cut(s) 34, 55, 333, 364, 373, 424, 430, 532
CviKI_1 RGCY 8 cut(s) 34, 55, 333, 364, 373, 424, 430, 532
CviQI GTAC 2 cut(s) 211, 605
DdeI CTNAG 1 cut(s) 426
DpnI GATC 3 cut(s) 148, 197, 498
DpnII GATC 3 cut(s) 146, 195, 496
DraI TTTAAA 1 cut(s) 546
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 457
Eco32I GATATC 1 cut(s) 391
Eco47I GGWCC 3 cut(s) 80, 164, 344
Eco57I CTGAAG 1 cut(s) 69
EcoO109I RGGNCCY 2 cut(s) 80, 164
EcoRI GAATTC 1 cut(s) 269
EcoRV GATATC 1 cut(s) 391
EcoT14I CCWWGG 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 4 cut(s) 404, 422, 488, 592
FalI AAGNNNNNCTT 2 cut(s) 211, 243
FaqI GGGAC 1 cut(s) 502
FatI CATG 4 cut(s) 400, 418, 484, 588
FauI CCCGC 1 cut(s) 500
Fnu4HI GCNGC 2 cut(s) 482, 533
FokI GGATG 1 cut(s) 555
Fsp4HI GCNGC 2 cut(s) 482, 533
FspBI CTAG 2 cut(s) 501, 703
GluI GCNGC 2 cut(s) 482, 533
HapII CCGG 1 cut(s) 572
Hin1II CATG 4 cut(s) 404, 422, 488, 592
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 371
HinfI GANTC 4 cut(s) 6, 127, 397, 475
HpaII CCGG 1 cut(s) 572
HphI GGTGA 3 cut(s) 136, 205, 662
Hpy166II GTNNAC 2 cut(s) 526, 586
Hpy188I TCNGA 2 cut(s) 88, 146
Hpy188III TCNNGA 5 cut(s) 78, 131, 394, 419, 637
Hpy8I GTNNAC 2 cut(s) 526, 586
HpyAV CCTTC 2 cut(s) 93, 379
HpyCH4III ACNGT 2 cut(s) 210, 583
HpyCH4V TGCA 3 cut(s) 206, 257, 631
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 1 cut(s) 426
Hsp92II CATG 4 cut(s) 404, 422, 488, 592
Kzo9I GATC 3 cut(s) 146, 195, 496
LmnI GCTCC 3 cut(s) 31, 52, 628
Lsp1109I GCAGC 1 cut(s) 519
LweI GCATC 2 cut(s) 304, 584
MaeI CTAG 2 cut(s) 501, 703
MalI GATC 3 cut(s) 148, 197, 498
MboI GATC 3 cut(s) 146, 195, 496
MboII GAAGA 6 cut(s) 31, 34, 124, 169, 665, 671
MflI RGATCY 1 cut(s) 146
MluCI AATT 4 cut(s) 46, 269, 282, 324
MlyI GAGTC 2 cut(s) 15, 484
MmeI TCCRAC 1 cut(s) 434
MnlI CCTC 5 cut(s) 153, 172, 215, 497, 661
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 4 cut(s) 281, 360, 437, 545
MspI CCGG 1 cut(s) 572
MwoI GCNNNNNNNGC 1 cut(s) 370
NdeII GATC 3 cut(s) 146, 195, 496
NlaIII CATG 4 cut(s) 404, 422, 488, 592
NlaIV GGNNCC 2 cut(s) 54, 165
NmeAIII GCCGAG 1 cut(s) 329
NspV TTCGAA 1 cut(s) 613
PagI TCATGA 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 127, 397
PkrI GCNGC 2 cut(s) 483, 534
PleI GAGTC 2 cut(s) 14, 483
PpsI GAGTC 2 cut(s) 14, 483
PpuMI RGGWCCY 2 cut(s) 80, 164
Psp5II RGGWCCY 2 cut(s) 80, 164
PspN4I GGNNCC 2 cut(s) 54, 165
PspPI GGNCC 3 cut(s) 80, 164, 344
PspPPI RGGWCCY 2 cut(s) 80, 164
PsuI RGATCY 1 cut(s) 146
RsaI GTAC 2 cut(s) 212, 606
RsaNI GTAC 2 cut(s) 211, 605
SaqAI TTAA 4 cut(s) 281, 360, 437, 545
SatI GCNGC 2 cut(s) 482, 533
Sau3AI GATC 3 cut(s) 146, 195, 496
Sau96I GGNCC 3 cut(s) 80, 164, 344
ScaI AGTACT 1 cut(s) 212
SchI GAGTC 2 cut(s) 15, 484
SetI ASST 8 cut(s) 36, 85, 340, 349, 366, 375, 432, 534
SfaNI GCATC 2 cut(s) 304, 584
SfuI TTCGAA 1 cut(s) 613
SinI GGWCC 3 cut(s) 80, 164, 344
SmiI ATTTAAAT 1 cut(s) 546
Sse9I AATT 4 cut(s) 46, 269, 282, 324
SsiI CCGC 2 cut(s) 481, 507
SspMI CTAG 2 cut(s) 501, 703
StyI CCWWGG 1 cut(s) 457
SwaI ATTTAAAT 1 cut(s) 546
TaaI ACNGT 2 cut(s) 210, 583
TaqI TCGA 2 cut(s) 130, 613
TasI AATT 4 cut(s) 46, 269, 282, 324
TatI WGTACW 2 cut(s) 210, 604
TauI GCSGC 1 cut(s) 484
TfiI GAWTC 2 cut(s) 127, 397
Tru1I TTAA 4 cut(s) 281, 360, 437, 545
Tru9I TTAA 4 cut(s) 281, 360, 437, 545
TseI GCWGC 1 cut(s) 532
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 397
VpaK11BI GGWCC 3 cut(s) 80, 164, 344
XapI RAATTY 2 cut(s) 46, 269
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 2 cut(s) 501, 703
ZrmI AGTACT 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.