Rh5BG452800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002008
Physical Location & Seq
Reverse (-)
72638285 .. 72648781
10497 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG452800.1

Sequence Viewer

Length: 708 bp
ATGGGTGTACCCCATTTTCTTTCTTTTACGTGTGGAGACTTCATCCGGGTCTGTGGGATTTTTGAGGTTGCATTTTGCAAAAGAAAAGGACGGACTCCAATGGAGGCTATGAGTATAGCTCTGCACTGGGAGAATCAGCAAAATGAAGCGCTCCGAGGAATCTTAGATAAGTTAAGAACTGACCAGGCCAAGGGGTTGCTCAACTCCCATCATAATGGCTCTATCAAGGATCAACTTGCAAAAGAACAGAGCAAAGCAAATGCATTATCAGCTGTTGTTTATGATGAGAAGAGAATAAAGACCTTCAGAGATGAGAAAGAGAAAAAGAGAGAAGAAAACAATGGTGATTCGAGAAAAGTTGTTCAGATATCTATTGAAGATAACTCGACCAAAGCGGCCAATGACAAGAAAAAGACAAAGAAACTGAGGAAGGGAAAAGGAAAGAAGGTGAAGAACAATCAGGATTTGGATGATCCCTCTAATGCCGATGGTTTTGATGAATTAAATGTTTTGTGTCTGGAGCAAGTTTACAGAAGGGATGTGAAGATGCAAAATCAGTTCATTATAATGGTAGTTCAGAAGTTGGAGCTGCACGATTCTTTTGGAGTGATAATCGTTAGCCGGGACGTGCTGACGTTACTTATACGTAACTCTCAAAGCTCATTGCCTGACCTTGAGCTATCTCATGCAAAGAGCAATTTCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.76

Weight (kDa)

9.16

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 566
AciI CCGC 1 cut(s) 395
AclWI GGATC 2 cut(s) 237, 467
AcoI YGGCCR 1 cut(s) 396
AcuI CTGAAG 1 cut(s) 289
AfaI GTAC 1 cut(s) 9
AfeI AGCGCT 1 cut(s) 150
AfiI CCNNNNNNNGG 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 29
AgsI TTSAA 1 cut(s) 377
AjiI CACGTC 1 cut(s) 628
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 5 cut(s) 119, 272, 589, 660, 679
AluI AGCT 5 cut(s) 119, 272, 589, 660, 679
Alw26I GTCTC 1 cut(s) 30
AlwI GGATC 2 cut(s) 237, 467
Aor51HI AGCGCT 1 cut(s) 150
AoxI GGCC 2 cut(s) 186, 396
ApeKI GCWGC 1 cut(s) 589
AspLEI GCGC 1 cut(s) 151
AsuC2I CCSGG 2 cut(s) 47, 623
AsuHPI GGTGA 2 cut(s) 356, 460
BbvI GCAGC 1 cut(s) 576
BccI CCATC 2 cut(s) 216, 482
BciT130I CCWGG 1 cut(s) 185
BcnI CCSGG 2 cut(s) 47, 623
BcoDI GTCTC 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 152
BisI GCNGC 2 cut(s) 396, 590
BlsI GCNGC 2 cut(s) 397, 591
Bme1390I CCNGG 3 cut(s) 47, 185, 623
BmgBI CACGTC 1 cut(s) 628
BmrFI CCNGG 3 cut(s) 47, 185, 623
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 537
BmuI ACTGGG 1 cut(s) 136
BplI GAGNNNNNCTC 2 cut(s) 103, 135
BpmI CTGGAG 1 cut(s) 539
BpuEI CTTGAG 1 cut(s) 695
BpuMI CCSGG 2 cut(s) 47, 623
BsaAI YACGTR 2 cut(s) 30, 647
BsaJI CCNNGG 2 cut(s) 154, 189
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 662
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 154, 189
BseGI GGATG 3 cut(s) 42, 475, 544
BseLI CCNNNNNNNGG 1 cut(s) 190
BseMI GCAATG 1 cut(s) 662
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 576
BsgI GTGCAG 2 cut(s) 107, 575
BshFI GGCC 2 cut(s) 188, 398
BsiSI CCGG 2 cut(s) 46, 622
BslFI GGGAC 1 cut(s) 638
BslI CCNNNNNNNGG 1 cut(s) 190
BsmAI GTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 638
BsnI GGCC 2 cut(s) 188, 398
Bsp143I GATC 2 cut(s) 229, 472
BspACI CCGC 1 cut(s) 395
BspANI GGCC 2 cut(s) 188, 398
BspCNI CTCAG 1 cut(s) 417
BspPI GGATC 2 cut(s) 237, 467
BsrDI GCAATG 1 cut(s) 662
BsrI ACTGG 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 154, 189
BssMI GATC 2 cut(s) 229, 472
BssT1I CCWWGG 1 cut(s) 189
Bst2UI CCWGG 1 cut(s) 185
Bst6I CTCTTC 1 cut(s) 284
BstBAI YACGTR 2 cut(s) 30, 647
BstDEI CTNAG 2 cut(s) 163, 425
BstF5I GGATG 3 cut(s) 42, 475, 544
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 2 cut(s) 232, 475
BstMAI GTCTC 1 cut(s) 30
BstMBI GATC 2 cut(s) 229, 472
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 3 cut(s) 45, 183, 621
BstSNI TACGTA 1 cut(s) 647
BstV1I GCAGC 1 cut(s) 576
BstXI CCANNNNNNTGG 1 cut(s) 215
BsuRI GGCC 2 cut(s) 188, 398
BtrI CACGTC 1 cut(s) 628
BtsCI GGATG 3 cut(s) 42, 475, 544
BtsIMutI CAGTG 1 cut(s) 124
CfoI GCGC 1 cut(s) 151
Csp6I GTAC 1 cut(s) 8
CviAII CATG 1 cut(s) 686
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 2 cut(s) 163, 425
DpnI GATC 2 cut(s) 231, 474
DpnII GATC 2 cut(s) 229, 472
EaeI YGGCCR 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 284
EarI CTCTTC 1 cut(s) 284
Eco105I TACGTA 1 cut(s) 647
Eco130I CCWWGG 1 cut(s) 189
Eco32I GATATC 1 cut(s) 369
Eco47III AGCGCT 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 183
EcoRV GATATC 1 cut(s) 369
EcoT14I CCWWGG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 189
FaeI CATG 1 cut(s) 689
FaiI YATR 7 cut(s) 110, 116, 213, 282, 566, 644, 687
FaqI GGGAC 1 cut(s) 638
FatI CATG 1 cut(s) 685
Fnu4HI GCNGC 2 cut(s) 396, 590
FokI GGATG 3 cut(s) 29, 482, 551
Fsp4HI GCNGC 2 cut(s) 396, 590
GlaI GCGC 1 cut(s) 150
GluI GCNGC 2 cut(s) 396, 590
GsuI CTGGAG 1 cut(s) 539
HaeII RGCGCY 1 cut(s) 152
HaeIII GGCC 2 cut(s) 188, 398
HapII CCGG 2 cut(s) 46, 622
HhaI GCGC 1 cut(s) 151
Hin1II CATG 1 cut(s) 689
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 5 cut(s) 94, 133, 159, 347, 596
HpaII CCGG 2 cut(s) 46, 622
HphI GGTGA 2 cut(s) 356, 460
Hpy166II GTNNAC 2 cut(s) 8, 529
Hpy188I TCNGA 4 cut(s) 155, 308, 366, 579
Hpy188III TCNNGA 3 cut(s) 351, 461, 518
Hpy8I GTNNAC 2 cut(s) 8, 529
HpyAV CCTTC 4 cut(s) 313, 424, 439, 528
HpyCH4IV ACGT 4 cut(s) 29, 627, 635, 646
HpyCH4V TGCA 8 cut(s) 71, 78, 124, 239, 263, 550, 592, 689
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 2 cut(s) 163, 425
HpySE526I ACGT 4 cut(s) 29, 627, 635, 646
Hsp92II CATG 1 cut(s) 689
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 2 cut(s) 229, 472
LmnI GCTCC 3 cut(s) 156, 520, 586
LpnPI CCDG 8 cut(s) 59, 112, 170, 197, 446, 503, 635, 681
Lsp1109I GCAGC 1 cut(s) 576
LweI GCATC 1 cut(s) 537
MaeII ACGT 4 cut(s) 29, 627, 635, 646
MaeIII GTNAC 2 cut(s) 636, 647
MalI GATC 2 cut(s) 231, 474
MboI GATC 2 cut(s) 229, 472
MboII GAAGA 5 cut(s) 301, 344, 389, 463, 556
MluCI AATT 2 cut(s) 500, 697
MlyI GAGTC 1 cut(s) 88
MmeI TCCRAC 1 cut(s) 564
MnlI CCTC 5 cut(s) 58, 97, 149, 420, 487
Mph1103I ATGCAT 1 cut(s) 265
MseI TTAA 2 cut(s) 173, 503
MslI CAYNNNNRTG 2 cut(s) 213, 566
MspA1I CMGCKG 1 cut(s) 272
MspI CCGG 2 cut(s) 46, 622
MspR9I CCNGG 3 cut(s) 47, 185, 623
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 269
NciI CCSGG 2 cut(s) 47, 623
NdeII GATC 2 cut(s) 229, 472
NlaIII CATG 1 cut(s) 689
NsiI ATGCAT 1 cut(s) 265
PfeI GAWTC 4 cut(s) 133, 159, 347, 596
PkrI GCNGC 2 cut(s) 397, 591
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
Ppu21I YACGTR 2 cut(s) 30, 647
PsiI TTATAA 1 cut(s) 566
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
RseI CAYNNNNRTG 2 cut(s) 213, 566
SaqAI TTAA 2 cut(s) 173, 503
SatI GCNGC 2 cut(s) 396, 590
Sau3AI GATC 2 cut(s) 229, 472
SchI GAGTC 1 cut(s) 88
ScrFI CCNGG 3 cut(s) 47, 185, 623
SfaNI GCATC 1 cut(s) 537
SmiMI CAYNNNNRTG 2 cut(s) 213, 566
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
SnaBI TACGTA 1 cut(s) 647
Sse9I AATT 2 cut(s) 500, 697
SsiI CCGC 1 cut(s) 395
StyD4I CCNGG 3 cut(s) 45, 183, 621
StyI CCWWGG 1 cut(s) 189
TaiI ACGT 4 cut(s) 32, 630, 638, 649
TaqI TCGA 3 cut(s) 350, 386, 702
TasI AATT 2 cut(s) 500, 697
TauI GCSGC 1 cut(s) 398
TfiI GAWTC 4 cut(s) 133, 159, 347, 596
Tru1I TTAA 2 cut(s) 173, 503
Tru9I TTAA 2 cut(s) 173, 503
TscAI CASTG 1 cut(s) 131
TseI GCWGC 1 cut(s) 589
TspDTI ATGAA 4 cut(s) 31, 159, 513, 550
TspGWI ACGGA 1 cut(s) 106
TspRI CASTG 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.