MD09G1079700.v1.1

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0002008
Physical Location & Seq
Forward (+)
5597816 .. 5601280
3465 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1079700.v1.1.491

Sequence Viewer

Length: 1053 bp
ATGGGAATGAAGGACAAGAAGAAGACCCATGAGAGCAAGAAGGCTGCCCTGCCAAATTTGGATATTGTTGAAAAGGTTAAAATGTTGGGATCGGCAGAGATGAGAAAGAGAAAAAGGGCAAAGGAAAGCGATGCTGACTCTCGAAAGGTTGTCCAAGTCTCTGTTGAAGATAATTCAGTCAAACCAGCCAAAGATAAGAAAAAGACAAAACTAACGAAGAAAAGGAAAGTAAAGAATGTGAAGAATTATGTAGCTGTGGAAAGCGAGAATGATCACCCAAATACGGAGACTGATGACGATTTTAATGAAATCAATGATGATGGAGTTGCTGATCAGAGCCCATTTGAAACTCAGGAAGAGATTGAAATTGGTGAAGTGCTCACTGAGGCTGGTAAGTCAAAGAAAGCTAAGAAAAAGAAAAAGAAGGATCGTAATCCATTAGAGTTTGTGAAGTCACTGGAAAAGGAAGTAGAAGCTGGTCGGGAGAGCAGCTCAAGAGGAATATCAAGCGTATCCAAGAAAGCTTTGAAAAAGAAAAAGAGGGATCTTGATTCATCAGAGTCCACAAAGACAATGGAAACGGAAGTAGAAGCTGATCAGGCTGATGTTTACCTTATTTCTTCAGGGGATGAGGACTCTTCGAAAGGAATGAAAAAATGGGTTACGGAATACCATCAAAGCAGACCTGGATTGAAGGAACTGCAGCAAAGAATCGATCAGTTTATGGTTGAACATGATGAAAAACTGGAACAGGAAAAGAAAGAGAAAGAAGCCCGAGCTGCAGAGGGAGGATGGACAGTTGTAGTACATCATAAAGGAAGGAAGAAGACCACAGATGCTGAGAGTGGAATTACAGTAGGGTCTGTCGCCCAGGCTGCTTTGGAGGACAAGGTGGCCAAGAAGAAACGTACAGAAGTTTTTGGGCTAGATTTTTATCGATTCCAAAGGAAAGAAGCTCAGAGGAATGAAATTATGATGCTCCAGAGCAAGTTTGAGCAAGATAAAAAGCGGATACAGCAATTAAGAGCGGCTAGGAAGTTTCGACCTTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

351

Amino Acids

40.05

Weight (kDa)

9.47

Isoelectric Point (pI)

43.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP7 PF12923 226 - 350 8e-27 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1028
AciI CCGC 2 cut(s) 1009, 1028
AclWI GGATC 3 cut(s) 97, 435, 552
AcoI YGGCCR 1 cut(s) 894
AcsI RAATTY 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 606
AfaI GTAC 2 cut(s) 807, 910
AfiI CCNNNNNNNGG 1 cut(s) 283
AgsI TTSAA 7 cut(s) 71, 167, 347, 365, 529, 694, 731
AjnI CCWGG 2 cut(s) 685, 870
AluBI AGCT 8 cut(s) 254, 407, 476, 492, 524, 593, 779, 956
AluI AGCT 8 cut(s) 254, 407, 476, 492, 524, 593, 779, 956
Alw21I GWGCWC 1 cut(s) 381
Alw26I GTCTC 2 cut(s) 163, 281
AlwI GGATC 3 cut(s) 97, 435, 552
AlwNI CAGNNNCTG 1 cut(s) 839
Ama87I CYCGRG 1 cut(s) 774
AoxI GGCC 1 cut(s) 894
ApeKI GCWGC 5 cut(s) 44, 489, 703, 779, 875
ApoI RAATTY 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 266, 383
AsuII TTCGAA 1 cut(s) 641
AvaI CYCGRG 1 cut(s) 774
BalI TGGCCA 1 cut(s) 896
BanII GRGCYC 1 cut(s) 341
BbsI GAAGAC 2 cut(s) 29, 833
Bbv12I GWGCWC 1 cut(s) 381
BbvI GCAGC 5 cut(s) 31, 501, 715, 766, 862
BccI CCATC 3 cut(s) 314, 681, 786
BciT130I CCWGG 2 cut(s) 687, 872
BciVI GTATCC 2 cut(s) 523, 1005
BclI TGATCA 3 cut(s) 271, 331, 595
BcoDI GTCTC 2 cut(s) 163, 281
BfaI CTAG 2 cut(s) 926, 1032
BfmI CTRYAG 2 cut(s) 701, 780
BfuI GTATCC 2 cut(s) 523, 1005
BisI GCNGC 6 cut(s) 45, 490, 704, 780, 876, 1029
BlsI GCNGC 6 cut(s) 46, 491, 705, 781, 877, 1030
Bme1390I CCNGG 2 cut(s) 687, 872
BmeT110I CYCGRG 1 cut(s) 774
BmrFI CCNGG 2 cut(s) 687, 872
BmsI GCATC 3 cut(s) 121, 826, 966
BpiI GAAGAC 2 cut(s) 29, 833
BplI GAGNNNNNCTC 2 cut(s) 476, 508
BpmI CTGGAG 1 cut(s) 965
Bpu14I TTCGAA 1 cut(s) 641
BpuEI CTTGAG 1 cut(s) 478
Bsa29I ATCGAT 2 cut(s) 714, 937
BsaBI GATNNNNATC 2 cut(s) 432, 933
BsaJI CCNNGG 1 cut(s) 870
Bsc4I CCNNNNNNNGG 1 cut(s) 283
Bse1I ACTGG 2 cut(s) 462, 750
Bse8I GATNNNNATC 2 cut(s) 432, 933
BseBI CCWGG 2 cut(s) 687, 872
BseCI ATCGAT 2 cut(s) 714, 937
BseDI CCNNGG 1 cut(s) 870
BseGI GGATG 2 cut(s) 634, 797
BseJI GATNNNNATC 2 cut(s) 432, 933
BseLI CCNNNNNNNGG 1 cut(s) 283
BseMII CTCAG 4 cut(s) 365, 375, 831, 971
BseNI ACTGG 2 cut(s) 462, 750
BseXI GCAGC 5 cut(s) 31, 501, 715, 766, 862
BshFI GGCC 1 cut(s) 896
BshVI ATCGAT 2 cut(s) 714, 937
BsiHKAI GWGCWC 1 cut(s) 381
BsiHKCI CYCGRG 1 cut(s) 774
BslI CCNNNNNNNGG 1 cut(s) 283
BsmAI GTCTC 2 cut(s) 163, 281
BsnI GGCC 1 cut(s) 896
BsoBI CYCGRG 1 cut(s) 774
Bsp119I TTCGAA 1 cut(s) 641
Bsp1286I GDGCHC 2 cut(s) 341, 381
Bsp143I GATC 7 cut(s) 89, 271, 331, 427, 544, 595, 715
BspACI CCGC 2 cut(s) 1009, 1028
BspANI GGCC 1 cut(s) 896
BspCNI CTCAG 4 cut(s) 364, 376, 832, 970
BspDI ATCGAT 2 cut(s) 714, 937
BspMAI CTGCAG 2 cut(s) 705, 784
BspPI GGATC 3 cut(s) 97, 435, 552
BspT104I TTCGAA 1 cut(s) 641
BsrBI CCGCTC 1 cut(s) 1028
BsrI ACTGG 2 cut(s) 462, 750
BssECI CCNNGG 1 cut(s) 870
BssMI GATC 7 cut(s) 89, 271, 331, 427, 544, 595, 715
Bst2UI CCWGG 2 cut(s) 687, 872
Bst4CI ACNGT 2 cut(s) 799, 856
Bst6I CTCTTC 2 cut(s) 351, 643
BstBI TTCGAA 1 cut(s) 641
BstDEI CTNAG 5 cut(s) 351, 384, 408, 840, 957
BstF5I GGATG 2 cut(s) 634, 797
BstKTI GATC 7 cut(s) 92, 274, 334, 430, 547, 598, 718
BstMAI GTCTC 2 cut(s) 163, 281
BstMBI GATC 7 cut(s) 89, 271, 331, 427, 544, 595, 715
BstMWI GCNNNNNNNGC 4 cut(s) 599, 779, 875, 1015
BstNI CCWGG 2 cut(s) 687, 872
BstSCI CCNGG 2 cut(s) 685, 870
BstSFI CTRYAG 2 cut(s) 701, 780
BstV1I GCAGC 5 cut(s) 31, 501, 715, 766, 862
BstV2I GAAGAC 2 cut(s) 29, 833
BstX2I RGATCY 1 cut(s) 544
BstYI RGATCY 1 cut(s) 544
Bsu15I ATCGAT 2 cut(s) 714, 937
BsuI GTATCC 2 cut(s) 523, 1005
BsuRI GGCC 1 cut(s) 896
BsuTUI ATCGAT 2 cut(s) 714, 937
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 634, 797
BtsIMutI CAGTG 2 cut(s) 381, 455
CaiI CAGNNNCTG 1 cut(s) 839
ClaI ATCGAT 2 cut(s) 714, 937
Csp6I GTAC 2 cut(s) 806, 909
CviAII CATG 2 cut(s) 29, 734
CviQI GTAC 2 cut(s) 806, 909
DdeI CTNAG 5 cut(s) 351, 384, 408, 840, 957
DpnI GATC 7 cut(s) 91, 273, 333, 429, 546, 597, 717
DpnII GATC 7 cut(s) 89, 271, 331, 427, 544, 595, 715
EaeI YGGCCR 1 cut(s) 894
Eam1104I CTCTTC 2 cut(s) 351, 643
EarI CTCTTC 2 cut(s) 351, 643
Eco24I GRGCYC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 606
Eco88I CYCGRG 1 cut(s) 774
EcoRII CCWGG 2 cut(s) 685, 870
EcoT38I GRGCYC 1 cut(s) 341
FaeI CATG 2 cut(s) 32, 737
FaiI YATR 6 cut(s) 30, 249, 725, 735, 813, 974
FatI CATG 2 cut(s) 28, 733
FbaI TGATCA 3 cut(s) 271, 331, 595
Fnu4HI GCNGC 6 cut(s) 45, 490, 704, 780, 876, 1029
FokI GGATG 2 cut(s) 641, 804
FriOI GRGCYC 1 cut(s) 341
Fsp4HI GCNGC 6 cut(s) 45, 490, 704, 780, 876, 1029
FspBI CTAG 2 cut(s) 926, 1032
GluI GCNGC 6 cut(s) 45, 490, 704, 780, 876, 1029
GsuI CTGGAG 1 cut(s) 965
HaeIII GGCC 1 cut(s) 896
Hin1II CATG 2 cut(s) 32, 737
HindIII AAGCTT 1 cut(s) 522
HinfI GANTC 6 cut(s) 137, 551, 560, 635, 711, 939
HphI GGTGA 2 cut(s) 266, 383
Hpy166II GTNNAC 2 cut(s) 564, 610
Hpy188I TCNGA 3 cut(s) 336, 559, 960
Hpy188III TCNNGA 6 cut(s) 141, 353, 482, 495, 548, 982
Hpy8I GTNNAC 2 cut(s) 564, 610
HpyAV CCTTC 5 cut(s) 4, 34, 418, 688, 813
HpyCH4III ACNGT 2 cut(s) 799, 856
HpyCH4IV ACGT 1 cut(s) 907
HpyCH4V TGCA 2 cut(s) 703, 782
HpyF10VI GCNNNNNNNGC 4 cut(s) 599, 779, 875, 1015
HpyF3I CTNAG 5 cut(s) 351, 384, 408, 840, 957
HpySE526I ACGT 1 cut(s) 907
Hsp92II CATG 2 cut(s) 32, 737
Ksp22I TGATCA 3 cut(s) 271, 331, 595
Kzo9I GATC 7 cut(s) 89, 271, 331, 427, 544, 595, 715
LmnI GCTCC 1 cut(s) 984
Lsp1109I GCAGC 5 cut(s) 31, 501, 715, 766, 862
LweI GCATC 3 cut(s) 121, 826, 966
MaeI CTAG 2 cut(s) 926, 1032
MaeII ACGT 1 cut(s) 907
MaeIII GTNAC 2 cut(s) 453, 661
MalI GATC 7 cut(s) 91, 273, 333, 429, 546, 597, 717
MbiI CCGCTC 1 cut(s) 1028
MboI GATC 7 cut(s) 89, 271, 331, 427, 544, 595, 715
MflI RGATCY 1 cut(s) 544
MhlI GDGCHC 2 cut(s) 341, 381
MlsI TGGCCA 1 cut(s) 896
MluCI AATT 7 cut(s) 55, 172, 244, 366, 849, 969, 1019
MluNI TGGCCA 1 cut(s) 896
MlyI GAGTC 3 cut(s) 131, 569, 629
MnlI CCTC 8 cut(s) 379, 491, 534, 625, 778, 782, 877, 954
Mox20I TGGCCA 1 cut(s) 896
MscI TGGCCA 1 cut(s) 896
MseI TTAA 3 cut(s) 78, 303, 1022
Msp20I TGGCCA 1 cut(s) 896
MspR9I CCNGG 2 cut(s) 687, 872
MvaI CCWGG 2 cut(s) 687, 872
MwoI GCNNNNNNNGC 4 cut(s) 599, 779, 875, 1015
NdeII GATC 7 cut(s) 89, 271, 331, 427, 544, 595, 715
NlaIII CATG 2 cut(s) 32, 737
NmuCI GTSAC 1 cut(s) 453
NspV TTCGAA 1 cut(s) 641
PfeI GAWTC 3 cut(s) 551, 711, 939
PkrI GCNGC 6 cut(s) 46, 491, 705, 781, 877, 1030
PleI GAGTC 3 cut(s) 131, 568, 629
PpsI GAGTC 3 cut(s) 131, 568, 629
Psp6I CCWGG 2 cut(s) 685, 870
PspGI CCWGG 2 cut(s) 685, 870
PstI CTGCAG 2 cut(s) 705, 784
PstNI CAGNNNCTG 1 cut(s) 839
PsuI RGATCY 1 cut(s) 544
RsaI GTAC 2 cut(s) 807, 910
RsaNI GTAC 2 cut(s) 806, 909
SaqAI TTAA 3 cut(s) 78, 303, 1022
SatI GCNGC 6 cut(s) 45, 490, 704, 780, 876, 1029
Sau3AI GATC 7 cut(s) 89, 271, 331, 427, 544, 595, 715
SchI GAGTC 3 cut(s) 131, 569, 629
ScrFI CCNGG 2 cut(s) 687, 872
SduI GDGCHC 2 cut(s) 341, 381
SfaNI GCATC 3 cut(s) 121, 826, 966
SfcI CTRYAG 2 cut(s) 701, 780
SfuI TTCGAA 1 cut(s) 641
SmlI CTYRAG 1 cut(s) 493
SmoI CTYRAG 1 cut(s) 493
Sse9I AATT 7 cut(s) 55, 172, 244, 366, 849, 969, 1019
SsiI CCGC 2 cut(s) 1009, 1028
SspMI CTAG 2 cut(s) 926, 1032
StyD4I CCNGG 2 cut(s) 685, 870
TaaI ACNGT 2 cut(s) 799, 856
TaiI ACGT 1 cut(s) 910
TaqI TCGA 5 cut(s) 142, 641, 714, 937, 1042
TasI AATT 7 cut(s) 55, 172, 244, 366, 849, 969, 1019
TatI WGTACW 1 cut(s) 805
TauI GCSGC 1 cut(s) 1031
TfiI GAWTC 3 cut(s) 551, 711, 939
Tru1I TTAA 3 cut(s) 78, 303, 1022
Tru9I TTAA 3 cut(s) 78, 303, 1022
TscAI CASTG 2 cut(s) 388, 462
TseFI GTSAC 1 cut(s) 453
TseI GCWGC 5 cut(s) 44, 489, 703, 779, 875
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 6 cut(s) 23, 321, 543, 665, 753, 981
TspGWI ACGGA 3 cut(s) 299, 596, 680
TspRI CASTG 2 cut(s) 388, 462
XapI RAATTY 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XspI CTAG 2 cut(s) 926, 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.