Rorug02G0505600

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002008
Physical Location & Seq
Forward (+)
63689142 .. 63690351
1210 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0505600.1

Sequence Viewer

Length: 885 bp
ATGATCAGTGATGCCTTCCCATCTTGGTTAGGAGTGCTTCAACAATTAAAAGGTCTCATTTTGCGGTCTAATGCATTTCATGGTATAATTGGGAAGCCTACAAGTAGCCATGAGTTCCCTCAGCTGTCCATCATTGATTTATCTAGCAACGATTTTTCAGGTATCTTGCCTTCCAAGTACTTAGAGAACTGGAATGCCATGAAATCTGTTGATGCAAACGAGCATATATACCTCCAATCCATGTTCTTCTTCGGCGGGACGTATCTAGAAACATTCTACTATGATTACCGAATTACAGTTTTTAGCAAAGGTGTTGAATTGGAGTATTTCAAGACCCCTTATCTTATGAGACTCATAGACCTCTCAAGTAACAGATTTGTGGGAGAGATTCCAGGTATCATTGGGAACCTAAGAGGGCTTAATCTGCTTAATCTTTCCAACAACACTCTCACTGGTCTCATCCCTCCATCTTTGGGGAACTTGATTGCTCTTGAATCGTTAGATCTCTCCCAAAATCAGCTCTCAGGAAAGATCCCCAGTGGTCTGGCACATTTGACATTCCTTGCATACTTTAATGTATCCCATAATAGTCTTTTGGGGTCTATTCCACAAGGTCGACAATTTGATACATTCCAAGAGGATATGTACCAAGGAAACTCAGGTTTGTGTGGAAAACCTTTGTCAAAGAAATGTGAAGATTCTGAGAGCACAACACCACAAACAACCTTTGAACAGGACGAAGACTTTGGGTTTCAAATTGAGCTAGATTGGTTTGTGGTTCTGCCAGGAGTTGTGGCTGGTATAATAGTAGGAATGGTTGTGGGAAACTTTTGGACAGCCAAGAAACATGACTGGTTTGTAGAGACATTCAGCAGGAGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

294

Amino Acids

33.0

Weight (kDa)

5.24

Isoelectric Point (pI)

38.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 117 - 174 6.1e-08 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 616
AciI CCGC 2 cut(s) 64, 255
AclWI GGATC 1 cut(s) 526
AfaI GTAC 2 cut(s) 179, 647
AfiI CCNNNNNNNGG 1 cut(s) 473
AgsI TTSAA 6 cut(s) 41, 317, 331, 494, 731, 755
AjnI CCWGG 2 cut(s) 391, 784
AluBI AGCT 3 cut(s) 124, 520, 763
AluI AGCT 3 cut(s) 124, 520, 763
Alw21I GWGCWC 1 cut(s) 710
Alw26I GTCTC 4 cut(s) 59, 343, 461, 857
AlwI GGATC 1 cut(s) 526
ArsI GACNNNNNNTTYG 2 cut(s) 728, 760
BarI GAAGNNNNNNTAC 2 cut(s) 154, 186
BbsI GAAGAC 1 cut(s) 747
Bbv12I GWGCWC 1 cut(s) 710
BbvCI CCTCAGC 1 cut(s) 120
BccI CCATC 3 cut(s) 28, 137, 475
BciT130I CCWGG 2 cut(s) 393, 786
BciVI GTATCC 1 cut(s) 589
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 4 cut(s) 59, 343, 461, 857
BfaI CTAG 3 cut(s) 144, 266, 764
BfuI GTATCC 1 cut(s) 589
BglII AGATCT 1 cut(s) 502
BmcAI AGTACT 1 cut(s) 179
Bme1390I CCNGG 2 cut(s) 393, 786
BmiI GGNNCC 1 cut(s) 407
BmrFI CCNGG 2 cut(s) 393, 786
BmrI ACTGGG 1 cut(s) 531
BmsI GCATC 1 cut(s) 202
BmuI ACTGGG 1 cut(s) 531
BpiI GAAGAC 1 cut(s) 747
Bpu10I CCTNAGC 1 cut(s) 120
BpuEI CTTGAG 1 cut(s) 349
BsaI GGTCTC 2 cut(s) 59, 461
BsaJI CCNNGG 1 cut(s) 649
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 4 cut(s) 194, 457, 537, 857
BseBI CCWGG 2 cut(s) 393, 786
BseDI CCNNGG 1 cut(s) 649
BseGI GGATG 1 cut(s) 459
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMII CTCAG 4 cut(s) 134, 537, 672, 693
BseNI ACTGG 4 cut(s) 194, 457, 537, 857
BsiHKAI GWGCWC 1 cut(s) 710
BslFI GGGAC 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 4 cut(s) 59, 343, 461, 857
BsmFI GGGAC 1 cut(s) 271
BsmI GAATGC 1 cut(s) 199
Bso31I GGTCTC 2 cut(s) 59, 461
Bsp1286I GDGCHC 1 cut(s) 710
Bsp143I GATC 3 cut(s) 3, 502, 531
BspACI CCGC 2 cut(s) 64, 255
BspCNI CTCAG 4 cut(s) 133, 536, 671, 694
BspLI GGNNCC 1 cut(s) 407
BspPI GGATC 1 cut(s) 526
BspTNI GGTCTC 2 cut(s) 59, 461
BsrI ACTGG 4 cut(s) 194, 457, 537, 857
BssECI CCNNGG 1 cut(s) 649
BssMI GATC 3 cut(s) 3, 502, 531
BssT1I CCWWGG 1 cut(s) 649
Bst2UI CCWGG 2 cut(s) 393, 786
Bst4CI ACNGT 1 cut(s) 298
BstDEI CTNAG 6 cut(s) 120, 181, 410, 523, 658, 702
BstF5I GGATG 1 cut(s) 459
BstKTI GATC 3 cut(s) 6, 505, 534
BstMAI GTCTC 4 cut(s) 59, 343, 461, 857
BstMBI GATC 3 cut(s) 3, 502, 531
BstMWI GCNNNNNNNGC 1 cut(s) 424
BstNI CCWGG 2 cut(s) 393, 786
BstSCI CCNGG 2 cut(s) 391, 784
BstV2I GAAGAC 1 cut(s) 747
BstX2I RGATCY 2 cut(s) 502, 531
BstXI CCANNNNNNTGG 1 cut(s) 544
BstYI RGATCY 2 cut(s) 502, 531
BsuI GTATCC 1 cut(s) 589
BtsCI GGATG 1 cut(s) 459
BtsIMutI CAGTG 3 cut(s) 13, 450, 544
Csp6I GTAC 2 cut(s) 178, 646
CviAII CATG 5 cut(s) 80, 110, 199, 241, 848
CviJI RGCY 8 cut(s) 97, 108, 124, 418, 520, 763, 797, 839
CviKI_1 RGCY 8 cut(s) 97, 108, 124, 418, 520, 763, 797, 839
CviQI GTAC 2 cut(s) 178, 646
DdeI CTNAG 6 cut(s) 120, 181, 410, 523, 658, 702
DpnI GATC 3 cut(s) 5, 504, 533
DpnII GATC 3 cut(s) 3, 502, 531
Eco130I CCWWGG 1 cut(s) 649
Eco31I GGTCTC 2 cut(s) 59, 461
EcoRII CCWGG 2 cut(s) 391, 784
EcoT14I CCWWGG 1 cut(s) 649
EcoT22I ATGCAT 1 cut(s) 76
ErhI CCWWGG 1 cut(s) 649
FaeI CATG 5 cut(s) 83, 113, 202, 244, 851
FaqI GGGAC 1 cut(s) 271
FatI CATG 5 cut(s) 79, 109, 198, 240, 847
FauI CCCGC 1 cut(s) 248
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 1 cut(s) 616
FokI GGATG 1 cut(s) 446
FspBI CTAG 3 cut(s) 144, 266, 764
Hin1II CATG 5 cut(s) 83, 113, 202, 244, 851
HincII GTYRAC 1 cut(s) 617
HindII GTYRAC 1 cut(s) 617
HinfI GANTC 4 cut(s) 351, 388, 494, 698
Hpy166II GTNNAC 1 cut(s) 617
Hpy188I TCNGA 1 cut(s) 703
Hpy188III TCNNGA 4 cut(s) 266, 331, 491, 525
Hpy8I GTNNAC 1 cut(s) 617
HpyAV CCTTC 2 cut(s) 25, 180
HpyCH4III ACNGT 1 cut(s) 298
HpyCH4IV ACGT 1 cut(s) 260
HpyCH4V TGCA 3 cut(s) 74, 215, 566
HpyF10VI GCNNNNNNNGC 1 cut(s) 424
HpyF3I CTNAG 6 cut(s) 120, 181, 410, 523, 658, 702
HpySE526I ACGT 1 cut(s) 260
Hsp92II CATG 5 cut(s) 83, 113, 202, 244, 851
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 3 cut(s) 3, 502, 531
LweI GCATC 1 cut(s) 202
MaeI CTAG 3 cut(s) 144, 266, 764
MaeII ACGT 1 cut(s) 260
MaeIII GTNAC 1 cut(s) 368
MalI GATC 3 cut(s) 5, 504, 533
MboI GATC 3 cut(s) 3, 502, 531
MboII GAAGA 4 cut(s) 238, 241, 707, 752
MflI RGATCY 2 cut(s) 502, 531
MhlI GDGCHC 1 cut(s) 710
MluCI AATT 6 cut(s) 44, 87, 291, 317, 620, 756
MlyI GAGTC 1 cut(s) 345
MmeI TCCRAC 1 cut(s) 462
MnlI CCTC 8 cut(s) 129, 242, 371, 407, 474, 631, 870, 873
Mph1103I ATGCAT 1 cut(s) 76
MseI TTAA 4 cut(s) 47, 420, 429, 573
MspA1I CMGCKG 1 cut(s) 124
MspR9I CCNGG 2 cut(s) 393, 786
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 2 cut(s) 393, 786
MwoI GCNNNNNNNGC 1 cut(s) 424
NdeII GATC 3 cut(s) 3, 502, 531
NlaIII CATG 5 cut(s) 83, 113, 202, 244, 851
NlaIV GGNNCC 1 cut(s) 407
NsiI ATGCAT 1 cut(s) 76
PctI GAATGC 1 cut(s) 199
PfeI GAWTC 3 cut(s) 388, 494, 698
PleI GAGTC 1 cut(s) 345
PpsI GAGTC 1 cut(s) 345
Psp6I CCWGG 2 cut(s) 391, 784
PspGI CCWGG 2 cut(s) 391, 784
PspN4I GGNNCC 1 cut(s) 407
PsuI RGATCY 2 cut(s) 502, 531
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 2 cut(s) 179, 647
RsaNI GTAC 2 cut(s) 178, 646
SalI GTCGAC 1 cut(s) 615
SaqAI TTAA 4 cut(s) 47, 420, 429, 573
Sau3AI GATC 3 cut(s) 3, 502, 531
ScaI AGTACT 1 cut(s) 179
SchI GAGTC 1 cut(s) 345
ScrFI CCNGG 2 cut(s) 393, 786
SduI GDGCHC 1 cut(s) 710
SfaNI GCATC 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 6 cut(s) 44, 87, 291, 317, 620, 756
SsiI CCGC 2 cut(s) 64, 255
SspMI CTAG 3 cut(s) 144, 266, 764
StyD4I CCNGG 2 cut(s) 391, 784
StyI CCWWGG 1 cut(s) 649
TaaI ACNGT 1 cut(s) 298
TaiI ACGT 1 cut(s) 263
TaqI TCGA 1 cut(s) 616
TasI AATT 6 cut(s) 44, 87, 291, 317, 620, 756
TatI WGTACW 1 cut(s) 177
TfiI GAWTC 3 cut(s) 388, 494, 698
Tru1I TTAA 4 cut(s) 47, 420, 429, 573
Tru9I TTAA 4 cut(s) 47, 420, 429, 573
TscAI CASTG 3 cut(s) 13, 457, 544
TspDTI ATGAA 2 cut(s) 68, 215
TspRI CASTG 3 cut(s) 13, 457, 544
XbaI TCTAGA 1 cut(s) 265
XmiI GTMKAC 1 cut(s) 616
XspI CTAG 3 cut(s) 144, 266, 764
ZrmI AGTACT 1 cut(s) 179
Zsp2I ATGCAT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.