RLG00000021430

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002008
Physical Location & Seq
Reverse (-)
75344495 .. 75347474
2980 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021430

Sequence Viewer

Length: 1077 bp
ATGGGAGTCAAGGACAAGAAGAAGCCCAAGAAGAACAAGGAGTCTGCCCAGATAAATTTGGAGCCTGTTGAAAAGGATAAAAAGTCAGGACCTTCAGAGATGAGAAAGAGAAAAAGAGACAAGGAAAACAATGGTGATTCGAGAAGAGTTGTTCAGATCTCTATTGAAGATAACTCTCCTAAAGTGGCCAATGACAAGAAAAAGACAAAGAAACTGAGGAAAGGAAAAGTAAAGAAGGAGAAGAACAATCAGGATTTGGATGGACAACATGATCCCTCTAATACCGATGGTTTTGATGAATTAAATGACGATGAAGCAGCAGATGATCAGAGCGAATTCGAAATTCAGGGAGAGACTGGAAGTGCTGAAATGGTGCTCAATGAAGACGATCGTAACTCAAAGAAAGCTAGGAAAAAGAAAAAGAAGAATCGTGATTCCTTGGAAGGTGGGAAGTTACTGGAAAAGAGAGTGGAAGCTGTTCAAGGTGAACCTTGTCATCTCTCTTCAGTGGATGAGGACTGCTCAAGAGAAATAACAAGCATATCCAAGAAATCTCAGAAAAAGAAAAGGAGGGATATGGATTCATCAAAACCGAAGAAGTCATTGGAAAAGAAAGAAGAAGCTAACCAGGAGGATGTTTACCTTATCTCCTCTGAGGATGAGGGCAGCCCGAGAGGAATGAAAAAATGGATTATGGAATACCAGCAAAGTAGACCTGGATTGAAGGTACTGCAGCAAAGAATTGATGAGTTCATTATTGCACATGAGGCAAAATTGGAACAGGAAAGAAAAGAAAGAGAAGCCCTTTCTGCTGAGGAGGGATGGCAACTTGTACAACATCATAAAGGAAGGAAGAAAACCAAGGATGCTGATGGAATTACAGTAGGCTCTGTTGCCCAGGCTGTTGTGGAGAGCAAGAGGGCCAAGAAGAAGAATACAGATGTTGGGCTAGACTTCTACCGGTTTCAAAGGAAAGAAGCTCAGAGGAATGAAATTATGATGCTTCAGAGCAAATTTGAGCAGGATAAAAAGCGGATACAGCAGATAAGAGCAGCAAGGAAATTCAAGCCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

359

Amino Acids

41.35

Weight (kDa)

9.52

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP7 PF12923 236 - 358 7.3e-26 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 712
AciI CCGC 1 cut(s) 1033
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 186
AcsI RAATTY 5 cut(s) 55, 335, 342, 1013, 1061
AcuI CTGAAG 3 cut(s) 78, 489, 989
AfaI GTAC 2 cut(s) 729, 834
AgeI ACCGGT 1 cut(s) 960
AgsI TTSAA 6 cut(s) 71, 167, 482, 724, 968, 1066
AjnI CCWGG 3 cut(s) 627, 715, 897
AjuI GAANNNNNNNTTGG 2 cut(s) 587, 619
AluBI AGCT 4 cut(s) 407, 476, 623, 980
AluI AGCT 4 cut(s) 407, 476, 623, 980
Alw21I GWGCWC 1 cut(s) 378
Alw26I GTCTC 2 cut(s) 111, 347
AlwI GGATC 1 cut(s) 266
Ama87I CYCGRG 1 cut(s) 670
AoxI GGCC 2 cut(s) 186, 921
ApeKI GCWGC 4 cut(s) 317, 666, 733, 1052
ApoI RAATTY 5 cut(s) 55, 335, 342, 1013, 1061
AsiGI ACCGGT 1 cut(s) 960
Asp700I GAANNNNTTC 1 cut(s) 477
AspS9I GGNCC 2 cut(s) 89, 921
AsuHPI GGTGA 2 cut(s) 146, 497
AsuII TTCGAA 1 cut(s) 339
AvaI CYCGRG 1 cut(s) 670
AvaII GGWCC 1 cut(s) 89
BalI TGGCCA 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 390
Bbv12I GWGCWC 1 cut(s) 378
BbvCI CCTCAGC 1 cut(s) 813
BbvI GCAGC 4 cut(s) 329, 678, 745, 1064
BccI CCATC 4 cut(s) 254, 281, 816, 866
BciT130I CCWGG 3 cut(s) 629, 717, 899
BciVI GTATCC 1 cut(s) 1029
BclI TGATCA 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 111, 347
BfaI CTAG 2 cut(s) 408, 950
BfmI CTRYAG 1 cut(s) 731
BfuI GTATCC 1 cut(s) 1029
BglII AGATCT 1 cut(s) 156
BisI GCNGC 4 cut(s) 318, 667, 734, 1053
BlsI GCNGC 4 cut(s) 319, 668, 735, 1054
Bme1390I CCNGG 3 cut(s) 629, 717, 899
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 670
BmgT120I GGNCC 2 cut(s) 89, 921
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 3 cut(s) 629, 717, 899
BmsI GCATC 2 cut(s) 856, 990
BpiI GAAGAC 1 cut(s) 390
BplI GAGNNNNNCTC 2 cut(s) 506, 538
Bpu10I CCTNAGC 1 cut(s) 813
Bpu14I TTCGAA 1 cut(s) 339
BpuEI CTTGAG 1 cut(s) 508
BsaJI CCNNGG 3 cut(s) 438, 861, 897
BsaWI WCCGGW 1 cut(s) 960
BsaXI ACNNNNNCTCC 2 cut(s) 632, 662
Bse118I RCCGGY 1 cut(s) 960
Bse1I ACTGG 2 cut(s) 361, 462
BseBI CCWGG 3 cut(s) 629, 717, 899
BseDI CCNNGG 3 cut(s) 438, 861, 897
BseGI GGATG 6 cut(s) 265, 517, 640, 664, 827, 871
BseMII CTCAG 5 cut(s) 206, 569, 645, 804, 995
BseNI ACTGG 2 cut(s) 361, 462
BseRI GAGGAG 2 cut(s) 640, 830
BseXI GCAGC 4 cut(s) 329, 678, 745, 1064
Bsh1285I CGRYCG 1 cut(s) 391
BshFI GGCC 2 cut(s) 188, 923
BshTI ACCGGT 1 cut(s) 960
BsiEI CGRYCG 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 378
BsiHKCI CYCGRG 1 cut(s) 670
BsiSI CCGG 1 cut(s) 961
BsmAI GTCTC 2 cut(s) 111, 347
BsnI GGCC 2 cut(s) 188, 923
BsoBI CYCGRG 1 cut(s) 670
Bsp119I TTCGAA 1 cut(s) 339
Bsp1286I GDGCHC 1 cut(s) 378
Bsp1407I TGTACA 1 cut(s) 832
Bsp143I GATC 4 cut(s) 156, 271, 325, 388
BspACI CCGC 1 cut(s) 1033
BspANI GGCC 2 cut(s) 188, 923
BspCNI CTCAG 5 cut(s) 207, 568, 646, 805, 994
BspLI GGNNCC 1 cut(s) 63
BspMAI CTGCAG 1 cut(s) 735
BspPI GGATC 1 cut(s) 266
BspT104I TTCGAA 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 960
BsrGI TGTACA 1 cut(s) 832
BsrI ACTGG 2 cut(s) 361, 462
BssAI RCCGGY 1 cut(s) 960
BssECI CCNNGG 3 cut(s) 438, 861, 897
BssMI GATC 4 cut(s) 156, 271, 325, 388
BssT1I CCWWGG 2 cut(s) 438, 861
Bst2UI CCWGG 3 cut(s) 629, 717, 899
Bst4CI ACNGT 1 cut(s) 883
Bst6I CTCTTC 2 cut(s) 139, 508
BstAUI TGTACA 1 cut(s) 832
BstBI TTCGAA 1 cut(s) 339
BstDEI CTNAG 5 cut(s) 215, 555, 654, 813, 981
BstF5I GGATG 6 cut(s) 265, 517, 640, 664, 827, 871
BstKTI GATC 4 cut(s) 159, 274, 328, 391
BstMAI GTCTC 2 cut(s) 111, 347
BstMBI GATC 4 cut(s) 156, 271, 325, 388
BstMCI CGRYCG 1 cut(s) 391
BstMWI GCNNNNNNNGC 3 cut(s) 767, 809, 1039
BstNI CCWGG 3 cut(s) 629, 717, 899
BstSCI CCNGG 3 cut(s) 627, 715, 897
BstSFI CTRYAG 1 cut(s) 731
BstV1I GCAGC 4 cut(s) 329, 678, 745, 1064
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuI GTATCC 1 cut(s) 1029
BsuRI GGCC 2 cut(s) 188, 923
BtsCI GGATG 6 cut(s) 265, 517, 640, 664, 827, 871
BtsIMutI CAGTG 1 cut(s) 513
Cfr10I RCCGGY 1 cut(s) 960
Cfr13I GGNCC 2 cut(s) 89, 921
Csp6I GTAC 2 cut(s) 728, 833
CspAI ACCGGT 1 cut(s) 960
CviAII CATG 2 cut(s) 269, 764
CviQI GTAC 2 cut(s) 728, 833
DdeI CTNAG 5 cut(s) 215, 555, 654, 813, 981
DpnI GATC 4 cut(s) 158, 273, 327, 390
DpnII GATC 4 cut(s) 156, 271, 325, 388
EaeI YGGCCR 1 cut(s) 186
Eam1104I CTCTTC 2 cut(s) 139, 508
EarI CTCTTC 2 cut(s) 139, 508
Eco130I CCWWGG 2 cut(s) 438, 861
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 3 cut(s) 78, 489, 989
Eco88I CYCGRG 1 cut(s) 670
EcoO109I RGGNCCY 1 cut(s) 89
EcoRI GAATTC 1 cut(s) 335
EcoRII CCWGG 3 cut(s) 627, 715, 897
EcoT14I CCWWGG 2 cut(s) 438, 861
ErhI CCWWGG 2 cut(s) 438, 861
FaeI CATG 2 cut(s) 272, 767
FaiI YATR 8 cut(s) 270, 542, 578, 695, 765, 843, 998, 1072
FatI CATG 2 cut(s) 268, 763
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 712
Fnu4HI GCNGC 4 cut(s) 318, 667, 734, 1053
FokI GGATG 6 cut(s) 272, 524, 647, 671, 834, 878
Fsp4HI GCNGC 4 cut(s) 318, 667, 734, 1053
FspBI CTAG 2 cut(s) 408, 950
GluI GCNGC 4 cut(s) 318, 667, 734, 1053
HaeIII GGCC 2 cut(s) 188, 923
HapII CCGG 1 cut(s) 961
Hin1II CATG 2 cut(s) 272, 767
HinfI GANTC 6 cut(s) 6, 41, 137, 427, 434, 581
HpaII CCGG 1 cut(s) 961
HphI GGTGA 2 cut(s) 146, 497
Hpy166II GTNNAC 3 cut(s) 488, 640, 713
Hpy188I TCNGA 7 cut(s) 97, 156, 330, 558, 655, 984, 1008
Hpy188III TCNNGA 5 cut(s) 87, 141, 251, 431, 525
Hpy8I GTNNAC 3 cut(s) 488, 640, 713
HpyAV CCTTC 5 cut(s) 102, 229, 437, 718, 843
HpyCH4III ACNGT 1 cut(s) 883
HpyCH4V TGCA 2 cut(s) 733, 761
HpyF10VI GCNNNNNNNGC 3 cut(s) 767, 809, 1039
HpyF3I CTNAG 5 cut(s) 215, 555, 654, 813, 981
Hsp92II CATG 2 cut(s) 272, 767
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 4 cut(s) 156, 271, 325, 388
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 4 cut(s) 329, 678, 745, 1064
LweI GCATC 2 cut(s) 856, 990
MaeI CTAG 2 cut(s) 408, 950
MaeIII GTNAC 2 cut(s) 392, 453
MalI GATC 4 cut(s) 158, 273, 327, 390
MboI GATC 4 cut(s) 156, 271, 325, 388
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 378
MlsI TGGCCA 1 cut(s) 188
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 2 cut(s) 15, 50
Mox20I TGGCCA 1 cut(s) 188
MroXI GAANNNNTTC 1 cut(s) 477
MscI TGGCCA 1 cut(s) 188
MseI TTAA 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 188
MspI CCGG 1 cut(s) 961
MspR9I CCNGG 3 cut(s) 629, 717, 899
MvaI CCWGG 3 cut(s) 629, 717, 899
MwoI GCNNNNNNNGC 3 cut(s) 767, 809, 1039
NdeII GATC 4 cut(s) 156, 271, 325, 388
NlaIII CATG 2 cut(s) 272, 767
NlaIV GGNNCC 1 cut(s) 63
NspV TTCGAA 1 cut(s) 339
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 4 cut(s) 137, 427, 434, 581
PinAI ACCGGT 1 cut(s) 960
PkrI GCNGC 4 cut(s) 319, 668, 735, 1054
Ple19I CGATCG 1 cut(s) 391
PleI GAGTC 2 cut(s) 14, 49
PpsI GAGTC 2 cut(s) 14, 49
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 3 cut(s) 627, 715, 897
PspGI CCWGG 3 cut(s) 627, 715, 897
PspN4I GGNNCC 1 cut(s) 63
PspPI GGNCC 2 cut(s) 89, 921
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 1 cut(s) 735
PsuI RGATCY 1 cut(s) 156
PvuI CGATCG 1 cut(s) 391
RsaI GTAC 2 cut(s) 729, 834
RsaNI GTAC 2 cut(s) 728, 833
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 4 cut(s) 318, 667, 734, 1053
Sau3AI GATC 4 cut(s) 156, 271, 325, 388
Sau96I GGNCC 2 cut(s) 89, 921
SchI GAGTC 2 cut(s) 15, 50
ScrFI CCNGG 3 cut(s) 629, 717, 899
SduI GDGCHC 1 cut(s) 378
SfaNI GCATC 2 cut(s) 856, 990
SfcI CTRYAG 1 cut(s) 731
SfuI TTCGAA 1 cut(s) 339
SinI GGWCC 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 523
SmoI CTYRAG 1 cut(s) 523
SsiI CCGC 1 cut(s) 1033
SspMI CTAG 2 cut(s) 408, 950
StyD4I CCNGG 3 cut(s) 627, 715, 897
StyI CCWWGG 2 cut(s) 438, 861
TaaI ACNGT 1 cut(s) 883
TaqI TCGA 2 cut(s) 140, 339
TatI WGTACW 1 cut(s) 832
TfiI GAWTC 4 cut(s) 137, 427, 434, 581
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 1 cut(s) 513
TseI GCWGC 4 cut(s) 317, 666, 733, 1052
TspDTI ATGAA 7 cut(s) 312, 327, 396, 573, 695, 742, 1005
TspRI CASTG 1 cut(s) 513
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 5 cut(s) 55, 335, 342, 1013, 1061
XmiI GTMKAC 1 cut(s) 712
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 2 cut(s) 408, 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.