Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0002008

Physical Location & Seq

Genomic Coordinates Reverse (-)

31999349 .. 32003184

Gene Structure 3836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00353940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGAAGAACAATCAGGATTTGGATGATCCCTCTAATGCCGATGGTTTTGATGAATTAAATGTTTCGTGTCTGGAGCAAGTTTACAGAAGGGATGTGAAGATGCAAAATCATTTCATTACAATGGTAGTTCAGAAGTTGGAGCTGCACGATTCTTTTGGAGTGCCGAAGCTTTTTGTTGCACGATATGACTCAGTCTCATTTGGTCTACTGTTAAGTTTCCAAATGTCCCCAAAGTGCCGCGCATGGGTGCGTCCGACATCCGTCGAGTTCTTGGACAACGGTGTTAAGAAATATACGTCGATCGACTTTATATCATACAACGGTGAATTCACCGTCATCCGATTTTTCATCGACAACATCGAGATAGACGACGGTGAGTCTTCAAATCGACGACGTTTTTTCACCGTCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.95

Weight (kDa)

5.12

Isoelectric Point (pI)

46.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38720 AT5G38720 AT5G38720
fragaria_vesca	FvH4_6g45790 FvH4_6g45790 FvH4_6g45790 FvH4_6g45790
malus_domestica	MD09G1079700.v1.1 MD17G1070200.v1.1
prunus_persica	Prupe.3G244000_v2.0.a1
pyrus_communis	pycom09g00650 pycom17g07020
rosa_chinensis	RchiOBHm_Chr2g0163971
rosa_laevigata	RLG00000000862 RLG00000001697 RLG00000008129 RLG00000008131 RLG00000013806 RLG00000014188 RLG00000021430
rosa_multiflora	Rmu_sc0002577.1_g000001 Rmu_sc0028598.1_g000001 Rmu_ssc0000432.1_g000022
rosa_roxburghii	Rroxscaffold_1G00074010 Rroxscaffold_2G00086880 Rroxscaffold_5G00353940
rosa_rugosa	Rorug02G0505300 Rorug02G0505400 Rorug02G0505500 Rorug02G0505600 Rorug02G0505700 Rorug02G0505800 Rorug04G0195700
rosa_samantha	Rh2AG391800 Rh2AG573900 Rh2BG584700 Rh2CG555600 Rh2DG594000 Rh4AG031000 Rh5BG452800 Rh6AG080600 Rh6CG040800 Rh6CG095900 Rh6DG018800
rosa_wichuraiana	Rw2G047470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	205
AccII	CGCG	1 cut(s)	240
AciI	CCGC	1 cut(s)	238
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	1 cut(s)	384
AhdI	GACNNNNNGTC	1 cut(s)	376
AleI	CACNNNNGTG	1 cut(s)	407
AluBI	AGCT	2 cut(s)	142, 169
AluI	AGCT	2 cut(s)	142, 169
Alw26I	GTCTC	1 cut(s)	199
AlwI	GGATC	1 cut(s)	20
ApeKI	GCWGC	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	242
AsuHPI	GGTGA	4 cut(s)	322, 335, 386, 394
BbsI	GAAGAC	1 cut(s)	372
BbvI	GCAGC	1 cut(s)	129
BccI	CCATC	1 cut(s)	35
BcoDI	GTCTC	1 cut(s)	199
BisI	GCNGC	2 cut(s)	143, 238
BlsI	GCNGC	2 cut(s)	144, 239
BmeRI	GACNNNNNGTC	1 cut(s)	376
BmsI	GCATC	1 cut(s)	90
BoxI	GACNNNNGTC	1 cut(s)	260
BpiI	GAAGAC	1 cut(s)	372
BpmI	CTGGAG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
BseGI	GGATG	4 cut(s)	28, 97, 257, 336
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	1 cut(s)	204
BseXI	GCAGC	1 cut(s)	129
BsgI	GTGCAG	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	240
Bsh1285I	CGRYCG	1 cut(s)	303
BsiEI	CGRYCG	1 cut(s)	303
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	211
Bsp143I	GATC	2 cut(s)	25, 300
BspACI	CCGC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	203
BspFNI	CGCG	1 cut(s)	240
BspPI	GGATC	1 cut(s)	20
BssMI	GATC	2 cut(s)	25, 300
Bst4CI	ACNGT	6 cut(s)	210, 281, 323, 334, 374, 406
BstDEI	CTNAG	1 cut(s)	190
BstF5I	GGATG	4 cut(s)	28, 97, 257, 336
BstFNI	CGCG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	2 cut(s)	28, 303
BstMAI	GTCTC	1 cut(s)	199
BstMBI	GATC	2 cut(s)	25, 300
BstMCI	CGRYCG	1 cut(s)	303
BstPAI	GACNNNNGTC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	240
BstV1I	GCAGC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	372
BtsCI	GGATG	4 cut(s)	28, 97, 257, 336
CfoI	GCGC	1 cut(s)	242
CseI	GACGC	1 cut(s)	239
CviAII	CATG	1 cut(s)	243
CviJI	RGCY	2 cut(s)	142, 169
CviKI_1	RGCY	2 cut(s)	142, 169
DdeI	CTNAG	1 cut(s)	190
DpnI	GATC	2 cut(s)	27, 302
DpnII	GATC	2 cut(s)	25, 300
DriI	GACNNNNNGTC	1 cut(s)	376
Eam1105I	GACNNNNNGTC	1 cut(s)	376
EcoRI	GAATTC	1 cut(s)	326
FaeI	CATG	1 cut(s)	246
FaiI	YATR	5 cut(s)	186, 244, 294, 311, 316
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	143, 238
FokI	GGATG	4 cut(s)	35, 104, 244, 323
Fsp4HI	GCNGC	2 cut(s)	143, 238
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	2 cut(s)	143, 238
GsuI	CTGGAG	1 cut(s)	92
HgaI	GACGC	1 cut(s)	239
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	1 cut(s)	246
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	3 cut(s)	149, 188, 377
HphI	GGTGA	4 cut(s)	322, 335, 386, 394
Hpy166II	GTNNAC	2 cut(s)	82, 206
Hpy188I	TCNGA	3 cut(s)	132, 255, 341
Hpy188III	TCNNGA	3 cut(s)	14, 71, 361
Hpy8I	GTNNAC	2 cut(s)	82, 206
Hpy99I	CGWCG	6 cut(s)	266, 301, 374, 393, 396, 410
HpyAV	CCTTC	1 cut(s)	81
HpyCH4III	ACNGT	6 cut(s)	210, 281, 323, 334, 374, 406
HpyCH4IV	ACGT	2 cut(s)	296, 394
HpyCH4V	TGCA	3 cut(s)	103, 145, 179
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	2 cut(s)	296, 394
Hsp92II	CATG	1 cut(s)	246
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	2 cut(s)	25, 300
LmnI	GCTCC	2 cut(s)	73, 139
LpnPI	CCDG	1 cut(s)	56
Lsp1109I	GCAGC	1 cut(s)	129
LweI	GCATC	1 cut(s)	90
MaeII	ACGT	2 cut(s)	296, 394
MalI	GATC	2 cut(s)	27, 302
MboI	GATC	2 cut(s)	25, 300
MboII	GAAGA	3 cut(s)	16, 109, 372
MluCI	AATT	2 cut(s)	53, 326
MlyI	GAGTC	2 cut(s)	182, 386
MmeI	TCCRAC	2 cut(s)	117, 278
MnlI	CCTC	1 cut(s)	40
MseI	TTAA	3 cut(s)	56, 212, 285
MslI	CAYNNNNRTG	2 cut(s)	119, 407
MvnI	CGCG	1 cut(s)	240
NdeII	GATC	2 cut(s)	25, 300
NlaIII	CATG	1 cut(s)	246
OliI	CACNNNNGTG	1 cut(s)	407
PcsI	WCGNNNNNNNCGW	2 cut(s)	357, 366
PfeI	GAWTC	1 cut(s)	149
PflFI	GACNNNGTC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	144, 239
Ple19I	CGATCG	1 cut(s)	303
PleI	GAGTC	2 cut(s)	182, 385
PpsI	GAGTC	2 cut(s)	182, 385
PshAI	GACNNNNGTC	1 cut(s)	260
PsyI	GACNNNGTC	1 cut(s)	191
PvuI	CGATCG	1 cut(s)	303
RseI	CAYNNNNRTG	2 cut(s)	119, 407
SaqAI	TTAA	3 cut(s)	56, 212, 285
SatI	GCNGC	2 cut(s)	143, 238
Sau3AI	GATC	2 cut(s)	25, 300
SchI	GAGTC	2 cut(s)	182, 386
SetI	ASST	4 cut(s)	144, 171, 299, 397
SfaNI	GCATC	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	119, 407
Sse9I	AATT	2 cut(s)	53, 326
SsiI	CCGC	1 cut(s)	238
TaaI	ACNGT	6 cut(s)	210, 281, 323, 334, 374, 406
TaiI	ACGT	2 cut(s)	299, 397
TaqI	TCGA	6 cut(s)	264, 299, 303, 351, 360, 388
TasI	AATT	2 cut(s)	53, 326
TauI	GCSGC	1 cut(s)	240
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	3 cut(s)	56, 212, 285
Tru9I	TTAA	3 cut(s)	56, 212, 285
TseI	GCWGC	1 cut(s)	142
TspDTI	ATGAA	4 cut(s)	17, 66, 103, 337
TspGWI	ACGGA	1 cut(s)	250
Tth111I	GACNNNGTC	1 cut(s)	191
XapI	RAATTY	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.