Rh2BG584700

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002008
Physical Location & Seq
Reverse (-)
80060568 .. 80063379
2812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG584700.1

Sequence Viewer

Length: 1038 bp
ATGTGTGTAATTGATGTCCATTATGTAGTAGACAGAAGACACTTGGATAAAAAGTCAGAACCTTCAGAGATGAGAAAGAGAAAAAGAGACAAGGAAAACAATGGTGATTCGAGAAGAGTTGTTCAGATCTCTATTGAAGATAACACTCCTAAAGCAGCCAATGACAAGAAAAAGACAAAGAAACTGAGGAAAGGAAAAGTAAAGAAGGTGAAGAACAATCAGGATTTGGATGATCCCTCTAATACCGATGGTTTTGATGAATTAAATGACGATGAAGCAGCAGATGATCAGAGCCAATTCGAAATTCAGGGAGAGACTGGAAGTGCTGAAATGGTGCTCAATGAAGATGATCGTAACTCAAAGAAAGCTAGGAAAAAGAAAAAGAAGAATCGTGATTCCTTGGAAGGTGGGAAGTTACTGGAAAAGAGAGTGGAAGCTGTTCGAGGTGAACCTTGTCATCTCTCTTCAGTGGATGAGGACTGCTCAAGAGAAATAACAAGCATATCCAAGAAATCTCAGAAAAAGAAAAGGAGGGATATGGATTCATCAAAACCTAAGAAGTCATTGGAAAAGAAAGAAGAAGCTAACCAGGAGGATGTTTACCTTATCTCCTCTGAGGATGAGGGCAGCCCGAGAGGAATGAAAAAATGGATTATGGAATACCAGCAAAATAGACCTGGATTGAAGGTACTGCAGCAAAGAATTGATGAGTTCATTATTGCACATGAGGCAAAATTGGAACAGGAAAGAAAAGAAAGAGAAGCCCTTTCTGCTGAGGAGGGATGGCAACTTGTACAACATCATAAAGGAAGGAAGAAAACCAAGGATGCTGATGGAATTACAGTAGGCTCTGTTGCCCAGGCTGTTGTGGAGAGCAAGAGGGCCAAGAAGAAGAATACAGATGTTGGGCTAGACTTTTACCGGTTCCAAAGGAAAGAAGCTCAGAGGAATGAAATTATGATGCTTCAGAGCAAATTTGAGCAGGATAAAAAGCGGATACAGCAGATAAGAGCAGCAAGGAAATTCAAGCCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

345

Amino Acids

40.1

Weight (kDa)

9.48

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP7 PF12923 223 - 345 8.8e-26 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AciI CCGC 1 cut(s) 994
AclWI GGATC 1 cut(s) 227
AcsI RAATTY 3 cut(s) 303, 974, 1022
AcuI CTGAAG 3 cut(s) 48, 450, 950
AfaI GTAC 2 cut(s) 690, 795
AgeI ACCGGT 1 cut(s) 921
AgsI TTSAA 3 cut(s) 137, 685, 1027
AjnI CCWGG 3 cut(s) 588, 676, 858
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 4 cut(s) 368, 437, 584, 941
AluI AGCT 4 cut(s) 368, 437, 584, 941
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 2 cut(s) 81, 308
AlwI GGATC 1 cut(s) 227
Ama87I CYCGRG 1 cut(s) 631
AoxI GGCC 1 cut(s) 882
ApeKI GCWGC 5 cut(s) 155, 278, 627, 694, 1013
ApoI RAATTY 3 cut(s) 303, 974, 1022
AsiGI ACCGGT 1 cut(s) 921
Asp700I GAANNNNTTC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 882
AsuHPI GGTGA 3 cut(s) 116, 220, 458
AsuII TTCGAA 1 cut(s) 300
AvaI CYCGRG 1 cut(s) 631
BbsI GAAGAC 1 cut(s) 43
Bbv12I GWGCWC 1 cut(s) 339
BbvCI CCTCAGC 1 cut(s) 774
BbvI GCAGC 5 cut(s) 167, 290, 639, 706, 1025
BccI CCATC 3 cut(s) 242, 777, 827
BciT130I CCWGG 3 cut(s) 590, 678, 860
BciVI GTATCC 1 cut(s) 990
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 2 cut(s) 81, 308
BfaI CTAG 2 cut(s) 369, 911
BfmI CTRYAG 1 cut(s) 692
BfuI GTATCC 1 cut(s) 990
BglII AGATCT 1 cut(s) 126
BisI GCNGC 5 cut(s) 156, 279, 628, 695, 1014
BlsI GCNGC 5 cut(s) 157, 280, 629, 696, 1015
Bme1390I CCNGG 3 cut(s) 590, 678, 860
BmeT110I CYCGRG 1 cut(s) 631
BmgT120I GGNCC 1 cut(s) 882
BmiI GGNNCC 1 cut(s) 926
BmrFI CCNGG 3 cut(s) 590, 678, 860
BmsI GCATC 2 cut(s) 817, 951
BpiI GAAGAC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 467, 499
Bpu10I CCTNAGC 1 cut(s) 774
Bpu14I TTCGAA 1 cut(s) 300
BpuEI CTTGAG 1 cut(s) 469
BsaJI CCNNGG 3 cut(s) 399, 822, 858
BsaWI WCCGGW 1 cut(s) 921
BsaXI ACNNNNNCTCC 2 cut(s) 593, 623
Bse118I RCCGGY 1 cut(s) 921
Bse1I ACTGG 2 cut(s) 322, 423
BseBI CCWGG 3 cut(s) 590, 678, 860
BseDI CCNNGG 3 cut(s) 399, 822, 858
BseGI GGATG 6 cut(s) 235, 478, 601, 625, 788, 832
BseMII CTCAG 5 cut(s) 176, 530, 606, 765, 956
BseNI ACTGG 2 cut(s) 322, 423
BseRI GAGGAG 2 cut(s) 601, 791
BseXI GCAGC 5 cut(s) 167, 290, 639, 706, 1025
BshFI GGCC 1 cut(s) 884
BshTI ACCGGT 1 cut(s) 921
BsiHKAI GWGCWC 1 cut(s) 339
BsiHKCI CYCGRG 1 cut(s) 631
BsiSI CCGG 1 cut(s) 922
BsmAI GTCTC 2 cut(s) 81, 308
BsnI GGCC 1 cut(s) 884
BsoBI CYCGRG 1 cut(s) 631
Bsp119I TTCGAA 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 339
Bsp1407I TGTACA 1 cut(s) 793
Bsp143I GATC 4 cut(s) 126, 232, 286, 349
BspACI CCGC 1 cut(s) 994
BspANI GGCC 1 cut(s) 884
BspCNI CTCAG 5 cut(s) 177, 529, 607, 766, 955
BspLI GGNNCC 1 cut(s) 926
BspMAI CTGCAG 1 cut(s) 696
BspPI GGATC 1 cut(s) 227
BspT104I TTCGAA 1 cut(s) 300
BsrFI RCCGGY 1 cut(s) 921
BsrGI TGTACA 1 cut(s) 793
BsrI ACTGG 2 cut(s) 322, 423
BssAI RCCGGY 1 cut(s) 921
BssECI CCNNGG 3 cut(s) 399, 822, 858
BssMI GATC 4 cut(s) 126, 232, 286, 349
BssT1I CCWWGG 2 cut(s) 399, 822
Bst2UI CCWGG 3 cut(s) 590, 678, 860
Bst4CI ACNGT 1 cut(s) 844
Bst6I CTCTTC 2 cut(s) 109, 469
BstAUI TGTACA 1 cut(s) 793
BstBI TTCGAA 1 cut(s) 300
BstDEI CTNAG 6 cut(s) 185, 516, 555, 615, 774, 942
BstF5I GGATG 6 cut(s) 235, 478, 601, 625, 788, 832
BstKTI GATC 4 cut(s) 129, 235, 289, 352
BstMAI GTCTC 2 cut(s) 81, 308
BstMBI GATC 4 cut(s) 126, 232, 286, 349
BstMWI GCNNNNNNNGC 3 cut(s) 728, 770, 1000
BstNI CCWGG 3 cut(s) 590, 678, 860
BstSCI CCNGG 3 cut(s) 588, 676, 858
BstSFI CTRYAG 1 cut(s) 692
BstV1I GCAGC 5 cut(s) 167, 290, 639, 706, 1025
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 126
BstYI RGATCY 1 cut(s) 126
BsuI GTATCC 1 cut(s) 990
BsuRI GGCC 1 cut(s) 884
BtsCI GGATG 6 cut(s) 235, 478, 601, 625, 788, 832
BtsIMutI CAGTG 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 921
Cfr13I GGNCC 1 cut(s) 882
Csp6I GTAC 2 cut(s) 689, 794
CspAI ACCGGT 1 cut(s) 921
CviAII CATG 1 cut(s) 725
CviQI GTAC 2 cut(s) 689, 794
DdeI CTNAG 6 cut(s) 185, 516, 555, 615, 774, 942
DpnI GATC 4 cut(s) 128, 234, 288, 351
DpnII GATC 4 cut(s) 126, 232, 286, 349
Eam1104I CTCTTC 2 cut(s) 109, 469
EarI CTCTTC 2 cut(s) 109, 469
Eco130I CCWWGG 2 cut(s) 399, 822
Eco57I CTGAAG 3 cut(s) 48, 450, 950
Eco88I CYCGRG 1 cut(s) 631
EcoRII CCWGG 3 cut(s) 588, 676, 858
EcoT14I CCWWGG 2 cut(s) 399, 822
ErhI CCWWGG 2 cut(s) 399, 822
FaeI CATG 1 cut(s) 728
FaiI YATR 8 cut(s) 24, 503, 539, 656, 726, 804, 959, 1033
FatI CATG 1 cut(s) 724
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 5 cut(s) 156, 279, 628, 695, 1014
FokI GGATG 6 cut(s) 242, 485, 608, 632, 795, 839
Fsp4HI GCNGC 5 cut(s) 156, 279, 628, 695, 1014
FspBI CTAG 2 cut(s) 369, 911
GluI GCNGC 5 cut(s) 156, 279, 628, 695, 1014
HaeIII GGCC 1 cut(s) 884
HapII CCGG 1 cut(s) 922
Hin1II CATG 1 cut(s) 728
HinfI GANTC 4 cut(s) 107, 388, 395, 542
HpaII CCGG 1 cut(s) 922
HphI GGTGA 3 cut(s) 116, 220, 458
Hpy166II GTNNAC 3 cut(s) 31, 449, 601
Hpy188I TCNGA 8 cut(s) 58, 67, 126, 291, 519, 616, 945, 969
Hpy188III TCNNGA 4 cut(s) 111, 221, 392, 486
Hpy8I GTNNAC 3 cut(s) 31, 449, 601
HpyAV CCTTC 5 cut(s) 72, 199, 398, 679, 804
HpyCH4III ACNGT 1 cut(s) 844
HpyCH4V TGCA 2 cut(s) 694, 722
HpyF10VI GCNNNNNNNGC 3 cut(s) 728, 770, 1000
HpyF3I CTNAG 6 cut(s) 185, 516, 555, 615, 774, 942
Hsp92II CATG 1 cut(s) 728
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 4 cut(s) 126, 232, 286, 349
Lsp1109I GCAGC 5 cut(s) 167, 290, 639, 706, 1025
LweI GCATC 2 cut(s) 817, 951
MaeI CTAG 2 cut(s) 369, 911
MaeIII GTNAC 2 cut(s) 353, 414
MalI GATC 4 cut(s) 128, 234, 288, 351
MboI GATC 4 cut(s) 126, 232, 286, 349
MflI RGATCY 1 cut(s) 126
MhlI GDGCHC 1 cut(s) 339
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 1 cut(s) 263
MspI CCGG 1 cut(s) 922
MspR9I CCNGG 3 cut(s) 590, 678, 860
MvaI CCWGG 3 cut(s) 590, 678, 860
MwoI GCNNNNNNNGC 3 cut(s) 728, 770, 1000
NdeII GATC 4 cut(s) 126, 232, 286, 349
NlaIII CATG 1 cut(s) 728
NlaIV GGNNCC 1 cut(s) 926
NspV TTCGAA 1 cut(s) 300
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 4 cut(s) 107, 388, 395, 542
PinAI ACCGGT 1 cut(s) 921
PkrI GCNGC 5 cut(s) 157, 280, 629, 696, 1015
Psp6I CCWGG 3 cut(s) 588, 676, 858
PspGI CCWGG 3 cut(s) 588, 676, 858
PspN4I GGNNCC 1 cut(s) 926
PspPI GGNCC 1 cut(s) 882
PstI CTGCAG 1 cut(s) 696
PsuI RGATCY 1 cut(s) 126
RsaI GTAC 2 cut(s) 690, 795
RsaNI GTAC 2 cut(s) 689, 794
SaqAI TTAA 1 cut(s) 263
SatI GCNGC 5 cut(s) 156, 279, 628, 695, 1014
Sau3AI GATC 4 cut(s) 126, 232, 286, 349
Sau96I GGNCC 1 cut(s) 882
ScrFI CCNGG 3 cut(s) 590, 678, 860
SduI GDGCHC 1 cut(s) 339
SfaNI GCATC 2 cut(s) 817, 951
SfcI CTRYAG 1 cut(s) 692
SfuI TTCGAA 1 cut(s) 300
SmlI CTYRAG 1 cut(s) 484
SmoI CTYRAG 1 cut(s) 484
SsiI CCGC 1 cut(s) 994
SspMI CTAG 2 cut(s) 369, 911
StyD4I CCNGG 3 cut(s) 588, 676, 858
StyI CCWWGG 2 cut(s) 399, 822
TaaI ACNGT 1 cut(s) 844
TaqI TCGA 3 cut(s) 110, 300, 442
TatI WGTACW 1 cut(s) 793
TfiI GAWTC 4 cut(s) 107, 388, 395, 542
Tru1I TTAA 1 cut(s) 263
Tru9I TTAA 1 cut(s) 263
TscAI CASTG 1 cut(s) 474
TseI GCWGC 5 cut(s) 155, 278, 627, 694, 1013
TspDTI ATGAA 7 cut(s) 273, 288, 357, 534, 656, 703, 966
TspRI CASTG 1 cut(s) 474
XapI RAATTY 3 cut(s) 303, 974, 1022
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 2 cut(s) 369, 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.