Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002008

Physical Location & Seq

Genomic Coordinates Reverse (-)

80365139 .. 80368885

Gene Structure 3747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG573900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGGAGTCAAGGACAAGAAGAAGAACAAGGAGCTTGCCCAGAGAAATTTGGAGCCTGTTGAGAAGGATAAAAAGTCAGAACCTTCAGAGATGAGAAAGAGAAAAAGAGACAAGGAAAACAATGGTGATTCGAGAAGAGTTGTTCAGATCTCCATTGAAGATAACTCTCCTAAAGCGGCCAATGACAAGAAAAAGATAAAGAAACTGAGGAAAGGAAAAGTAAAGAAGGAGAAGAACAATCAGGATTTGGATGGACAACATGATCCCTCTAATACTGATGGTTTTGATGAATTAAATGACGATGAAGCAGCAGATGATCAGAGCCAATTTGAAATTCAGGGAGAGACTAGAAGTGCTGAAATGGTGCTCAATGAAGATGATCGTAACTCAAAGAAAGCTAGGAAAAAGAAAAAGAAGAATCGTGATTCCTTGGAAGGTGGGAAGTTACTGGAAAAGAGAGTGGAAGCTGTTCAAGGTGAACCTTGTCATCTCTCTTCAGTGGATGAGGACTGCTCAAGAGAAATAACAAGCATATCCAAGAAATCTCAGAAAAAGAAAAGGAGGGATATGGATTCATCAAAACCTAAGAAGTCATTGGAAAAGAAAGAAGAAGCTAACCAGGAGGATGTTTACCTTATCTCCTCTGAGGATGAGGGCAGCCCGAGAGGAATGAAAAAATGGATTATGGAATACCAGCAAAATAGACCTGGATTGAAGGTACTGCAGCAAAGAATTGATGAGTTCATTATTGCACATGAGGCAAAATTGGAACAGGTAATTTCCTCTTCCATGTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRP7

Protein Analysis

265

Amino Acids

30.55

Weight (kDa)

9.15

Isoelectric Point (pI)

48.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38720 AT5G38720 AT5G38720
fragaria_vesca	FvH4_6g45790 FvH4_6g45790 FvH4_6g45790 FvH4_6g45790
malus_domestica	MD09G1079700.v1.1 MD17G1070200.v1.1
prunus_persica	Prupe.3G244000_v2.0.a1
pyrus_communis	pycom09g00650 pycom17g07020
rosa_chinensis	RchiOBHm_Chr2g0163971
rosa_laevigata	RLG00000000862 RLG00000001697 RLG00000008129 RLG00000008131 RLG00000013806 RLG00000014188 RLG00000021430
rosa_multiflora	Rmu_sc0002577.1_g000001 Rmu_sc0028598.1_g000001 Rmu_ssc0000432.1_g000022
rosa_roxburghii	Rroxscaffold_1G00074010 Rroxscaffold_2G00086880 Rroxscaffold_5G00353940
rosa_rugosa	Rorug02G0505300 Rorug02G0505400 Rorug02G0505500 Rorug02G0505600 Rorug02G0505700 Rorug02G0505800 Rorug04G0195700
rosa_samantha	Rh2AG391800 Rh2AG573900 Rh2BG584700 Rh2CG555600 Rh2DG594000 Rh4AG031000 Rh5BG452800 Rh6AG080600 Rh6CG040800 Rh6CG095900 Rh6DG018800
rosa_wichuraiana	Rw2G047470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	796
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	1 cut(s)	257
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	2 cut(s)	46, 333
AcuI	CTGAAG	2 cut(s)	69, 480
AfaI	GTAC	1 cut(s)	720
AgsI	TTSAA	4 cut(s)	158, 332, 473, 715
AjnI	CCWGG	2 cut(s)	618, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	318, 350
AluBI	AGCT	4 cut(s)	34, 398, 467, 614
AluI	AGCT	4 cut(s)	34, 398, 467, 614
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	102, 338
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	661
AoxI	GGCC	1 cut(s)	177
ApeKI	GCWGC	3 cut(s)	308, 657, 724
ApoI	RAATTY	2 cut(s)	46, 333
Asp700I	GAANNNNTTC	1 cut(s)	468
AsuHPI	GGTGA	2 cut(s)	137, 488
AvaI	CYCGRG	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	3 cut(s)	320, 669, 736
BccI	CCATC	2 cut(s)	245, 272
BciT130I	CCWGG	2 cut(s)	620, 708
BclI	TGATCA	1 cut(s)	316
BcoDI	GTCTC	2 cut(s)	102, 338
BfaI	CTAG	2 cut(s)	348, 399
BfmI	CTRYAG	1 cut(s)	722
BglII	AGATCT	1 cut(s)	147
BisI	GCNGC	4 cut(s)	177, 309, 658, 725
BlsI	GCNGC	4 cut(s)	178, 310, 659, 726
Bme1390I	CCNGG	2 cut(s)	620, 708
BmeT110I	CYCGRG	1 cut(s)	661
BmiI	GGNNCC	1 cut(s)	54
BmrFI	CCNGG	2 cut(s)	620, 708
BplI	GAGNNNNNCTC	2 cut(s)	497, 529
BpuEI	CTTGAG	1 cut(s)	499
BsaJI	CCNNGG	1 cut(s)	429
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bse1I	ACTGG	1 cut(s)	453
BseBI	CCWGG	2 cut(s)	620, 708
BseDI	CCNNGG	1 cut(s)	429
BseGI	GGATG	4 cut(s)	256, 508, 631, 655
BseMII	CTCAG	3 cut(s)	197, 560, 636
BseNI	ACTGG	1 cut(s)	453
BseRI	GAGGAG	1 cut(s)	631
BseXI	GCAGC	3 cut(s)	320, 669, 736
BshFI	GGCC	1 cut(s)	179
BsiHKAI	GWGCWC	1 cut(s)	369
BsiHKCI	CYCGRG	1 cut(s)	661
BsmAI	GTCTC	2 cut(s)	102, 338
BsnI	GGCC	1 cut(s)	179
BsoBI	CYCGRG	1 cut(s)	661
Bsp1286I	GDGCHC	1 cut(s)	369
Bsp143I	GATC	4 cut(s)	147, 262, 316, 379
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	1 cut(s)	179
BspCNI	CTCAG	3 cut(s)	198, 559, 637
BspLI	GGNNCC	1 cut(s)	54
BspMAI	CTGCAG	1 cut(s)	726
BspPI	GGATC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	453
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	147, 262, 316, 379
BssT1I	CCWWGG	1 cut(s)	429
Bst2UI	CCWGG	2 cut(s)	620, 708
Bst6I	CTCTTC	3 cut(s)	130, 499, 790
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	4 cut(s)	206, 546, 585, 645
BstF5I	GGATG	4 cut(s)	256, 508, 631, 655
BstKTI	GATC	4 cut(s)	150, 265, 319, 382
BstMAI	GTCTC	2 cut(s)	102, 338
BstMBI	GATC	4 cut(s)	147, 262, 316, 379
BstMWI	GCNNNNNNNGC	1 cut(s)	758
BstNI	CCWGG	2 cut(s)	620, 708
BstSCI	CCNGG	2 cut(s)	618, 706
BstSFI	CTRYAG	1 cut(s)	722
BstV1I	GCAGC	3 cut(s)	320, 669, 736
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BsuRI	GGCC	1 cut(s)	179
BtsCI	GGATG	4 cut(s)	256, 508, 631, 655
BtsIMutI	CAGTG	1 cut(s)	504
Cac8I	GCNNGC	1 cut(s)	36
Csp6I	GTAC	1 cut(s)	719
CviAII	CATG	3 cut(s)	260, 755, 790
CviJI	RGCY	8 cut(s)	34, 55, 179, 324, 398, 467, 614, 660
CviKI_1	RGCY	8 cut(s)	34, 55, 179, 324, 398, 467, 614, 660
CviQI	GTAC	1 cut(s)	719
DdeI	CTNAG	4 cut(s)	206, 546, 585, 645
DpnI	GATC	4 cut(s)	149, 264, 318, 381
DpnII	GATC	4 cut(s)	147, 262, 316, 379
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	3 cut(s)	130, 499, 790
EarI	CTCTTC	3 cut(s)	130, 499, 790
Eco130I	CCWWGG	1 cut(s)	429
Eco57I	CTGAAG	2 cut(s)	69, 480
Eco88I	CYCGRG	1 cut(s)	661
EcoRII	CCWGG	2 cut(s)	618, 706
EcoT14I	CCWWGG	1 cut(s)	429
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	3 cut(s)	263, 758, 793
FaiI	YATR	7 cut(s)	261, 533, 569, 686, 756, 791, 796
FatI	CATG	3 cut(s)	259, 754, 789
FbaI	TGATCA	1 cut(s)	316
Fnu4HI	GCNGC	4 cut(s)	177, 309, 658, 725
FokI	GGATG	4 cut(s)	263, 515, 638, 662
Fsp4HI	GCNGC	4 cut(s)	177, 309, 658, 725
FspBI	CTAG	2 cut(s)	348, 399
GluI	GCNGC	4 cut(s)	177, 309, 658, 725
HaeIII	GGCC	1 cut(s)	179
Hin1II	CATG	3 cut(s)	263, 758, 793
HinfI	GANTC	5 cut(s)	6, 128, 418, 425, 572
HphI	GGTGA	2 cut(s)	137, 488
Hpy166II	GTNNAC	2 cut(s)	479, 631
Hpy188I	TCNGA	6 cut(s)	79, 88, 147, 321, 549, 646
Hpy188III	TCNNGA	4 cut(s)	132, 242, 422, 516
Hpy8I	GTNNAC	2 cut(s)	479, 631
HpyAV	CCTTC	5 cut(s)	58, 93, 220, 428, 709
HpyCH4V	TGCA	2 cut(s)	724, 752
HpyF10VI	GCNNNNNNNGC	1 cut(s)	758
HpyF3I	CTNAG	4 cut(s)	206, 546, 585, 645
Hsp92II	CATG	3 cut(s)	263, 758, 793
Ksp22I	TGATCA	1 cut(s)	316
Kzo9I	GATC	4 cut(s)	147, 262, 316, 379
LmnI	GCTCC	2 cut(s)	31, 52
Lsp1109I	GCAGC	3 cut(s)	320, 669, 736
MaeI	CTAG	2 cut(s)	348, 399
MaeIII	GTNAC	2 cut(s)	383, 444
MalI	GATC	4 cut(s)	149, 264, 318, 381
MboI	GATC	4 cut(s)	147, 262, 316, 379
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	369
MluCI	AATT	7 cut(s)	46, 290, 326, 333, 732, 764, 777
MlyI	GAGTC	1 cut(s)	15
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	1 cut(s)	293
MspR9I	CCNGG	2 cut(s)	620, 708
MvaI	CCWGG	2 cut(s)	620, 708
MwoI	GCNNNNNNNGC	1 cut(s)	758
NdeII	GATC	4 cut(s)	147, 262, 316, 379
NlaIII	CATG	3 cut(s)	263, 758, 793
NlaIV	GGNNCC	1 cut(s)	54
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	4 cut(s)	128, 418, 425, 572
PkrI	GCNGC	4 cut(s)	178, 310, 659, 726
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PsiI	TTATAA	1 cut(s)	796
Psp6I	CCWGG	2 cut(s)	618, 706
PspGI	CCWGG	2 cut(s)	618, 706
PspN4I	GGNNCC	1 cut(s)	54
PstI	CTGCAG	1 cut(s)	726
PsuI	RGATCY	1 cut(s)	147
RsaI	GTAC	1 cut(s)	720
RsaNI	GTAC	1 cut(s)	719
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	4 cut(s)	177, 309, 658, 725
Sau3AI	GATC	4 cut(s)	147, 262, 316, 379
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	620, 708
SduI	GDGCHC	1 cut(s)	369
SfcI	CTRYAG	1 cut(s)	722
SmlI	CTYRAG	1 cut(s)	514
SmoI	CTYRAG	1 cut(s)	514
Sse9I	AATT	7 cut(s)	46, 290, 326, 333, 732, 764, 777
SsiI	CCGC	1 cut(s)	176
SspMI	CTAG	2 cut(s)	348, 399
StyD4I	CCNGG	2 cut(s)	618, 706
StyI	CCWWGG	1 cut(s)	429
TaqI	TCGA	1 cut(s)	131
TasI	AATT	7 cut(s)	46, 290, 326, 333, 732, 764, 777
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	4 cut(s)	128, 418, 425, 572
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	1 cut(s)	504
TseI	GCWGC	3 cut(s)	308, 657, 724
TspDTI	ATGAA	6 cut(s)	303, 318, 387, 564, 686, 733
TspRI	CASTG	1 cut(s)	504
XapI	RAATTY	2 cut(s)	46, 333
XmnI	GAANNNNTTC	1 cut(s)	468
XspI	CTAG	2 cut(s)	348, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.