Rorug02G0505400

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002008
Physical Location & Seq
Forward (+)
63671442 .. 63673066
1625 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0505400.1

Sequence Viewer

Length: 888 bp
ATGGCTTCCAAGTCCATATTTTCAGTAGCAATATTGCTACTATTTCTGGCTGTTGGATCCAATGCAGGTGGAATTGCTATATACTGGGGCCAGAATGGGAATGAAGGCACATTAGCGGAAACATGTGCTTCAGGGAACTACAAATTCGTAAACATAGCTTTCCTCTCATCATTCGGTAATGGCCAAACCCCTGCCATAAACCTCGCCGGTCACTGTGACCCGTCTACCAACGAATGCACCAAGTTGAGCCCCGAGATCAAGTCATGCCAGGCCAAAGGCATTAAGGTCATACTCTCCATAGGAGGAGCTGCAGGGAGCTACTCTTTGGCCTCATCCGACGATGCCCGCCAAGTTGCTACTTACTTGTGGAACAACTTCTTGGGAGGACAGTCCTCTTCAAGGCCGTTGGGAGATGCTGTTTTGGATGGAGTTGACTTTGACATTGAAGGAGGGACTGATCAATATTGGGATGACCTTGCGAGGGACCTTTCCGGGTACAGTAAGAAGGGCAAGAAAGTATACTTGACTGCTGCTCCACAGTGTCCATTTCCTGATGCTTATGTTGGAAATGCACTCAACACAGGCCTTTTCGACTTTGTTTGGGTACAATTCTACAACAACCCTCCTTGCCAGTACACTTCTGGCGATATTTCAAATCTCGAAGATGGTTGGAAGCAATGGACTTCTGCCATTCCTGCACATAAGATTTTCTTAGGACTTCCTGCTGCACCTCAAGCTGCTGGTAGTGGATTTATTCCTGCGGCTGATCTCAACTCACAAGTCCTTCCGGCTATCAAAAATTCAGCCAAATATGGAGGTGTCATGCTTTGGTCGAAGTATTATGATGATCTCGATGGATACAGCTCCTCCATCAAGAATGATGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

295

Amino Acids

31.3

Weight (kDa)

4.78

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_18 PF00704 25 - 243 1.1e-22 Glycosyl hydrolases family 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 56
AccI GTMKAC 2 cut(s) 224, 519
AciI CCGC 3 cut(s) 116, 346, 761
AclWI GGATC 2 cut(s) 51, 64
AcoI YGGCCR 1 cut(s) 181
AcsI RAATTY 2 cut(s) 143, 799
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 3 cut(s) 497, 606, 635
AfiI CCNNNNNNNGG 2 cut(s) 399, 481
AflIII ACRYGT 1 cut(s) 122
AgsI TTSAA 3 cut(s) 399, 446, 654
AjnI CCWGG 1 cut(s) 267
AjuI GAANNNNNNNTTGG 2 cut(s) 362, 394
AluBI AGCT 5 cut(s) 158, 308, 318, 737, 864
AluI AGCT 5 cut(s) 158, 308, 318, 737, 864
AlwI GGATC 2 cut(s) 51, 64
Ama87I CYCGRG 1 cut(s) 251
AoxI GGCC 6 cut(s) 88, 181, 270, 327, 401, 583
ApeKI GCWGC 4 cut(s) 308, 530, 725, 737
ApoI RAATTY 2 cut(s) 143, 799
Asp700I GAANNNNTTC 1 cut(s) 374
AspS9I GGNCC 2 cut(s) 88, 484
AsuC2I CCSGG 1 cut(s) 493
AvaI CYCGRG 1 cut(s) 251
AvaII GGWCC 1 cut(s) 484
BalI TGGCCA 1 cut(s) 183
BamHI GGATCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 251
BbvI GCAGC 4 cut(s) 295, 517, 712, 724
BccI CCATC 4 cut(s) 419, 659, 848, 878
BceAI ACGGC 1 cut(s) 388
BciT130I CCWGG 1 cut(s) 269
BciVI GTATCC 1 cut(s) 851
BclI TGATCA 1 cut(s) 457
BcnI CCSGG 1 cut(s) 493
BfaI CTAG 1 cut(s) 886
BfmI CTRYAG 1 cut(s) 309
BfuAI ACCTGC 1 cut(s) 56
BfuI GTATCC 1 cut(s) 851
BisI GCNGC 5 cut(s) 309, 531, 726, 738, 762
BlsI GCNGC 5 cut(s) 310, 532, 727, 739, 763
Bme1390I CCNGG 2 cut(s) 269, 493
Bme18I GGWCC 1 cut(s) 484
BmeT110I CYCGRG 1 cut(s) 251
BmgT120I GGNCC 2 cut(s) 88, 484
BmiI GGNNCC 3 cut(s) 58, 89, 485
BmrFI CCNGG 2 cut(s) 269, 493
BmrI ACTGGG 1 cut(s) 94
BmsI GCATC 3 cut(s) 331, 403, 544
BmuI ACTGGG 1 cut(s) 94
BpuEI CTTGAG 1 cut(s) 717
BpuMI CCSGG 1 cut(s) 493
BsaXI ACNNNNNCTCC 6 cut(s) 402, 432, 517, 547, 851, 881
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 481
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 89, 631
Bse3DI GCAATG 1 cut(s) 683
BseBI CCWGG 1 cut(s) 269
BseGI GGATG 3 cut(s) 332, 430, 475
BseLI CCNNNNNNNGG 2 cut(s) 399, 481
BseMI GCAATG 1 cut(s) 683
BseNI ACTGG 2 cut(s) 89, 631
BseRI GAGGAG 2 cut(s) 318, 856
BseXI GCAGC 4 cut(s) 295, 517, 712, 724
BsgI GTGCAG 2 cut(s) 681, 711
BshFI GGCC 6 cut(s) 90, 183, 272, 329, 403, 585
BsiHKCI CYCGRG 1 cut(s) 251
BsiSI CCGG 3 cut(s) 207, 492, 788
BslFI GGGAC 2 cut(s) 466, 497
BslI CCNNNNNNNGG 2 cut(s) 399, 481
BsmFI GGGAC 2 cut(s) 466, 497
BsmI GAATGC 1 cut(s) 239
BsnI GGCC 6 cut(s) 90, 183, 272, 329, 403, 585
BsoBI CYCGRG 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 251
Bsp143I GATC 5 cut(s) 56, 255, 457, 766, 847
BspACI CCGC 3 cut(s) 116, 346, 761
BspANI GGCC 6 cut(s) 90, 183, 272, 329, 403, 585
BspLI GGNNCC 3 cut(s) 58, 89, 485
BspMAI CTGCAG 1 cut(s) 313
BspMI ACCTGC 1 cut(s) 56
BspPI GGATC 2 cut(s) 51, 64
BsrDI GCAATG 1 cut(s) 683
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 2 cut(s) 89, 631
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 5 cut(s) 56, 255, 457, 766, 847
BssNAI GTATAC 1 cut(s) 520
Bst1107I GTATAC 1 cut(s) 520
Bst2UI CCWGG 1 cut(s) 269
Bst4CI ACNGT 4 cut(s) 215, 390, 500, 540
Bst6I CTCTTC 1 cut(s) 400
BstC8I GCNNGC 1 cut(s) 346
BstDEI CTNAG 1 cut(s) 712
BstENI CCTNNNNNAGG 1 cut(s) 397
BstF5I GGATG 3 cut(s) 332, 430, 475
BstKTI GATC 5 cut(s) 59, 258, 460, 769, 850
BstMBI GATC 5 cut(s) 56, 255, 457, 766, 847
BstMWI GCNNNNNNNGC 2 cut(s) 695, 734
BstNI CCWGG 1 cut(s) 269
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 2 cut(s) 267, 491
BstSFI CTRYAG 1 cut(s) 309
BstV1I GCAGC 4 cut(s) 295, 517, 712, 724
BstX2I RGATCY 1 cut(s) 56
BstYI RGATCY 1 cut(s) 56
BstZ17I GTATAC 1 cut(s) 520
BsuI GTATCC 1 cut(s) 851
BsuRI GGCC 6 cut(s) 90, 183, 272, 329, 403, 585
BtsCI GGATG 3 cut(s) 332, 430, 475
BtsIMutI CAGTG 2 cut(s) 211, 545
BveI ACCTGC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 2 cut(s) 88, 484
Csp6I GTAC 3 cut(s) 496, 605, 634
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 3 cut(s) 123, 264, 823
CviQI GTAC 3 cut(s) 496, 605, 634
DdeI CTNAG 1 cut(s) 712
DpnI GATC 5 cut(s) 58, 257, 459, 768, 849
DpnII GATC 5 cut(s) 56, 255, 457, 766, 847
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 400
EarI CTCTTC 1 cut(s) 400
Eco147I AGGCCT 1 cut(s) 585
Eco24I GRGCYC 1 cut(s) 251
Eco47I GGWCC 1 cut(s) 484
Eco57I CTGAAG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 251
EcoNI CCTNNNNNAGG 1 cut(s) 397
EcoO109I RGGNCCY 1 cut(s) 484
EcoRII CCWGG 1 cut(s) 267
EcoT38I GRGCYC 1 cut(s) 251
FaeI CATG 3 cut(s) 126, 267, 826
FalI AAGNNNNNCTT 2 cut(s) 695, 727
FaqI GGGAC 2 cut(s) 466, 497
FatI CATG 3 cut(s) 122, 263, 822
FauI CCCGC 1 cut(s) 353
FbaI TGATCA 1 cut(s) 457
FblI GTMKAC 2 cut(s) 224, 519
Fnu4HI GCNGC 5 cut(s) 309, 531, 726, 738, 762
FokI GGATG 3 cut(s) 319, 437, 482
FriOI GRGCYC 1 cut(s) 251
Fsp4HI GCNGC 5 cut(s) 309, 531, 726, 738, 762
FspBI CTAG 1 cut(s) 886
GluI GCNGC 5 cut(s) 309, 531, 726, 738, 762
HaeIII GGCC 6 cut(s) 90, 183, 272, 329, 403, 585
HapII CCGG 3 cut(s) 207, 492, 788
Hin1II CATG 3 cut(s) 126, 267, 826
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HpaII CCGG 3 cut(s) 207, 492, 788
Hpy166II GTNNAC 5 cut(s) 151, 225, 433, 520, 636
Hpy188I TCNGA 1 cut(s) 337
Hpy188III TCNNGA 4 cut(s) 551, 659, 851, 874
Hpy8I GTNNAC 5 cut(s) 151, 225, 433, 520, 636
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 4 cut(s) 98, 440, 499, 794
HpyCH4III ACNGT 4 cut(s) 215, 390, 500, 540
HpyCH4V TGCA 6 cut(s) 65, 237, 311, 572, 698, 728
HpyF10VI GCNNNNNNNGC 2 cut(s) 695, 734
HpyF3I CTNAG 1 cut(s) 712
Hsp92II CATG 3 cut(s) 126, 267, 826
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 5 cut(s) 56, 255, 457, 766, 847
LmnI GCTCC 4 cut(s) 305, 315, 538, 869
Lsp1109I GCAGC 4 cut(s) 295, 517, 712, 724
LweI GCATC 3 cut(s) 331, 403, 544
MaeI CTAG 1 cut(s) 886
MaeIII GTNAC 2 cut(s) 209, 215
MalI GATC 5 cut(s) 58, 257, 459, 768, 849
MboI GATC 5 cut(s) 56, 255, 457, 766, 847
MboII GAAGA 2 cut(s) 387, 674
MflI RGATCY 1 cut(s) 56
MhlI GDGCHC 1 cut(s) 251
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 4 cut(s) 72, 143, 608, 799
MluNI TGGCCA 1 cut(s) 183
MmeI TCCRAC 4 cut(s) 34, 360, 544, 650
Mox20I TGGCCA 1 cut(s) 183
MroXI GAANNNNTTC 1 cut(s) 374
MscI TGGCCA 1 cut(s) 183
MseI TTAA 1 cut(s) 282
Msp20I TGGCCA 1 cut(s) 183
MspI CCGG 3 cut(s) 207, 492, 788
MspR9I CCNGG 2 cut(s) 269, 493
Mva1269I GAATGC 1 cut(s) 239
MvaI CCWGG 1 cut(s) 269
MwoI GCNNNNNNNGC 2 cut(s) 695, 734
NciI CCSGG 1 cut(s) 493
NdeII GATC 5 cut(s) 56, 255, 457, 766, 847
NlaIII CATG 3 cut(s) 126, 267, 826
NlaIV GGNNCC 3 cut(s) 58, 89, 485
NmuCI GTSAC 2 cut(s) 209, 215
NspI RCATGY 1 cut(s) 126
PaqCI CACCTGC 1 cut(s) 56
PceI AGGCCT 1 cut(s) 585
PciI ACATGT 1 cut(s) 122
PctI GAATGC 1 cut(s) 239
PdmI GAANNNNTTC 1 cut(s) 374
PkrI GCNGC 5 cut(s) 310, 532, 727, 739, 763
PpuMI RGGWCCY 1 cut(s) 484
PscI ACATGT 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 484
Psp6I CCWGG 1 cut(s) 267
PspGI CCWGG 1 cut(s) 267
PspN4I GGNNCC 3 cut(s) 58, 89, 485
PspPI GGNCC 2 cut(s) 88, 484
PspPPI RGGWCCY 1 cut(s) 484
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 56
RsaI GTAC 3 cut(s) 497, 606, 635
RsaNI GTAC 3 cut(s) 496, 605, 634
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 5 cut(s) 309, 531, 726, 738, 762
Sau3AI GATC 5 cut(s) 56, 255, 457, 766, 847
Sau96I GGNCC 2 cut(s) 88, 484
ScrFI CCNGG 2 cut(s) 269, 493
SduI GDGCHC 1 cut(s) 251
SfaNI GCATC 3 cut(s) 331, 403, 544
SfcI CTRYAG 1 cut(s) 309
SinI GGWCC 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 732
SmoI CTYRAG 1 cut(s) 732
Sse9I AATT 4 cut(s) 72, 143, 608, 799
SseBI AGGCCT 1 cut(s) 585
SsiI CCGC 3 cut(s) 116, 346, 761
SspI AATATT 2 cut(s) 33, 464
SspMI CTAG 1 cut(s) 886
StuI AGGCCT 1 cut(s) 585
StyD4I CCNGG 2 cut(s) 267, 491
TaaI ACNGT 4 cut(s) 215, 390, 500, 540
TaqI TCGA 4 cut(s) 591, 660, 833, 852
TasI AATT 4 cut(s) 72, 143, 608, 799
TatI WGTACW 1 cut(s) 633
TauI GCSGC 1 cut(s) 764
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 218, 545
TseFI GTSAC 2 cut(s) 209, 215
TseI GCWGC 4 cut(s) 308, 530, 725, 737
Tsp45I GTSAC 2 cut(s) 209, 215
TspDTI ATGAA 1 cut(s) 117
TspRI CASTG 2 cut(s) 218, 545
VpaK11BI GGWCC 1 cut(s) 484
XagI CCTNNNNNAGG 1 cut(s) 397
XapI RAATTY 2 cut(s) 143, 799
XceI RCATGY 1 cut(s) 126
XcmI CCANNNNNNNNNTGG 1 cut(s) 638
XmiI GTMKAC 2 cut(s) 224, 519
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 1 cut(s) 886
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.