RchiOBHm_Chr2g0163971

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002008
Physical Location & Seq
Reverse (-)
79215774 .. 79219234
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53210

Sequence Viewer

Length: 1068 bp
ATGGGAGTCAAGGACAAGAAGAAGACCAAGAAGAACAAGGAGTCTGCCCAGAGAAATTTGGAGCCTGTTGAAAAGGATAAAAAGTCAGGACCTTCAGAGATGAGAAAGAGAAAAAGAGACAAGGAAAACAATGGTGATTCGAGAAGAGTTGTTCAGATCTCCATTGAAGATAACACTCCTAAAGAGGCCAATGACAAGAAAAAGACAAAGAAACTGAGGAAAGGAAAGGTAAAGAAGGTGAAGAACAATCAGGATTTGGATGATCCCTCTAATACCGATGGTTTTGATGAATTAAATGATGATGAAGCAGCAGATGATCAGAGCCAATTCGAAATTCAGGGAGAGACTGGAAGTGCTGAAATGGTGCTCAATGAAGATGATCGTAACTCAAAGAAAGCTAGGAAAAAGAAAAAGAAGAATCGTGATTCCTTGGAAGGGGGGAAGTTACTGGAAAAGAGAGTGGAATCTGTTCAAGGTGAACATTGTCATCTCTCTTCAGTGGATGAGGACTGCTCAAGAGAAATAACAAGCATATCCAAGAAATCTCAGAAAAAGAAAAGGAGGGATATGGATTCATCAAAACCTAAGAAGTCATTGGAAAAGAAAGAAGAAGCTAACCAGGAGGATATTTACCTTATCTCCTCTGAGGATGAGGGCAGCCCGAGAGGAATGAAAAAATGGATTATGGAATACCAGCAAAATAGACCTGGATTGAAGGTACTGCAGCAAAGAATTGATGAGTTCATTATTGCACATGAGGCAAAATTGGAACAGGAAAGAAAAGAAAGAGAAGCCCTTTCTGCTGAGGAGGGATGGCAACTTGTACAACATCATAAAGGAAGGAAGAAAACCAAGGATGCTGATGGAATTACAGTAGGCTCTGTTGCCCAGGCTGTTGTGGAGAGCAAGAGGGCCAAGAAGAAGAATACAGATGTTGGGCTAGACTTTTATCGGTTCCAAAGGAAAGAAGCTCAGAGGAATGAAATTATGATGCTTCAGAGCAAATTTGAGCAGGATAAAAAGCGGATACAGCAGATAAGAGCAGCAAGGAAATTCAAGCCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

355

Amino Acids

41.19

Weight (kDa)

9.58

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP7 PF12923 233 - 355 9.4e-26 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1024
AclWI GGATC 1 cut(s) 257
AcsI RAATTY 4 cut(s) 55, 333, 1004, 1052
AcuI CTGAAG 3 cut(s) 78, 480, 980
AfaI GTAC 2 cut(s) 720, 825
AfiI CCNNNNNNNGG 1 cut(s) 435
AgsI TTSAA 5 cut(s) 71, 167, 473, 715, 1057
AjnI CCWGG 3 cut(s) 618, 706, 888
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 3 cut(s) 398, 614, 971
AluI AGCT 3 cut(s) 398, 614, 971
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 2 cut(s) 111, 338
AlwI GGATC 1 cut(s) 257
Ama87I CYCGRG 1 cut(s) 661
AoxI GGCC 2 cut(s) 186, 912
ApeKI GCWGC 4 cut(s) 308, 657, 724, 1043
ApoI RAATTY 4 cut(s) 55, 333, 1004, 1052
Asp700I GAANNNNTTC 1 cut(s) 468
AspS9I GGNCC 2 cut(s) 89, 912
AsuHPI GGTGA 3 cut(s) 146, 250, 488
AsuII TTCGAA 1 cut(s) 330
AvaI CYCGRG 1 cut(s) 661
AvaII GGWCC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 29
Bbv12I GWGCWC 1 cut(s) 369
BbvCI CCTCAGC 1 cut(s) 804
BbvI GCAGC 4 cut(s) 320, 669, 736, 1055
BccI CCATC 3 cut(s) 272, 807, 857
BciT130I CCWGG 3 cut(s) 620, 708, 890
BciVI GTATCC 1 cut(s) 1020
BclI TGATCA 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 111, 338
BfaI CTAG 2 cut(s) 399, 941
BfmI CTRYAG 1 cut(s) 722
BfuI GTATCC 1 cut(s) 1020
BglII AGATCT 1 cut(s) 156
BisI GCNGC 4 cut(s) 309, 658, 725, 1044
BlsI GCNGC 4 cut(s) 310, 659, 726, 1045
Bme1390I CCNGG 3 cut(s) 620, 708, 890
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 661
BmgT120I GGNCC 2 cut(s) 89, 912
BmiI GGNNCC 2 cut(s) 63, 956
BmrFI CCNGG 3 cut(s) 620, 708, 890
BmsI GCATC 2 cut(s) 847, 981
BpiI GAAGAC 1 cut(s) 29
BplI GAGNNNNNCTC 2 cut(s) 497, 529
Bpu10I CCTNAGC 1 cut(s) 804
Bpu14I TTCGAA 1 cut(s) 330
BpuEI CTTGAG 1 cut(s) 499
BsaJI CCNNGG 3 cut(s) 429, 852, 888
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 1 cut(s) 435
Bse1I ACTGG 2 cut(s) 352, 453
BseBI CCWGG 3 cut(s) 620, 708, 890
BseDI CCNNGG 3 cut(s) 429, 852, 888
BseGI GGATG 5 cut(s) 265, 508, 655, 818, 862
BseLI CCNNNNNNNGG 1 cut(s) 435
BseMII CTCAG 5 cut(s) 206, 560, 636, 795, 986
BseNI ACTGG 2 cut(s) 352, 453
BseRI GAGGAG 2 cut(s) 631, 821
BseXI GCAGC 4 cut(s) 320, 669, 736, 1055
BshFI GGCC 2 cut(s) 188, 914
BsiHKAI GWGCWC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 661
BslI CCNNNNNNNGG 1 cut(s) 435
BsmAI GTCTC 2 cut(s) 111, 338
BsnI GGCC 2 cut(s) 188, 914
BsoBI CYCGRG 1 cut(s) 661
Bsp119I TTCGAA 1 cut(s) 330
Bsp1286I GDGCHC 1 cut(s) 369
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 4 cut(s) 156, 262, 316, 379
BspACI CCGC 1 cut(s) 1024
BspANI GGCC 2 cut(s) 188, 914
BspCNI CTCAG 5 cut(s) 207, 559, 637, 796, 985
BspLI GGNNCC 2 cut(s) 63, 956
BspMAI CTGCAG 1 cut(s) 726
BspPI GGATC 1 cut(s) 257
BspT104I TTCGAA 1 cut(s) 330
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 2 cut(s) 352, 453
BssECI CCNNGG 3 cut(s) 429, 852, 888
BssMI GATC 4 cut(s) 156, 262, 316, 379
BssT1I CCWWGG 2 cut(s) 429, 852
Bst2UI CCWGG 3 cut(s) 620, 708, 890
Bst4CI ACNGT 1 cut(s) 874
Bst6I CTCTTC 2 cut(s) 139, 499
BstAUI TGTACA 1 cut(s) 823
BstBI TTCGAA 1 cut(s) 330
BstDEI CTNAG 6 cut(s) 215, 546, 585, 645, 804, 972
BstF5I GGATG 5 cut(s) 265, 508, 655, 818, 862
BstKTI GATC 4 cut(s) 159, 265, 319, 382
BstMAI GTCTC 2 cut(s) 111, 338
BstMBI GATC 4 cut(s) 156, 262, 316, 379
BstMWI GCNNNNNNNGC 3 cut(s) 758, 800, 1030
BstNI CCWGG 3 cut(s) 620, 708, 890
BstSCI CCNGG 3 cut(s) 618, 706, 888
BstSFI CTRYAG 1 cut(s) 722
BstV1I GCAGC 4 cut(s) 320, 669, 736, 1055
BstV2I GAAGAC 1 cut(s) 29
BstX2I RGATCY 1 cut(s) 156
BstYI RGATCY 1 cut(s) 156
BsuI GTATCC 1 cut(s) 1020
BsuRI GGCC 2 cut(s) 188, 914
BtsCI GGATG 5 cut(s) 265, 508, 655, 818, 862
BtsIMutI CAGTG 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 89, 912
Csp6I GTAC 2 cut(s) 719, 824
CviAII CATG 1 cut(s) 755
CviQI GTAC 2 cut(s) 719, 824
DdeI CTNAG 6 cut(s) 215, 546, 585, 645, 804, 972
DpnI GATC 4 cut(s) 158, 264, 318, 381
DpnII GATC 4 cut(s) 156, 262, 316, 379
Eam1104I CTCTTC 2 cut(s) 139, 499
EarI CTCTTC 2 cut(s) 139, 499
Eco130I CCWWGG 2 cut(s) 429, 852
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 3 cut(s) 78, 480, 980
Eco88I CYCGRG 1 cut(s) 661
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 3 cut(s) 618, 706, 888
EcoT14I CCWWGG 2 cut(s) 429, 852
ErhI CCWWGG 2 cut(s) 429, 852
FaeI CATG 1 cut(s) 758
FaiI YATR 7 cut(s) 533, 569, 686, 756, 834, 989, 1063
FatI CATG 1 cut(s) 754
FbaI TGATCA 1 cut(s) 316
Fnu4HI GCNGC 4 cut(s) 309, 658, 725, 1044
FokI GGATG 5 cut(s) 272, 515, 662, 825, 869
Fsp4HI GCNGC 4 cut(s) 309, 658, 725, 1044
FspBI CTAG 2 cut(s) 399, 941
GluI GCNGC 4 cut(s) 309, 658, 725, 1044
HaeIII GGCC 2 cut(s) 188, 914
Hin1II CATG 1 cut(s) 758
HinfI GANTC 7 cut(s) 6, 41, 137, 418, 425, 464, 572
HphI GGTGA 3 cut(s) 146, 250, 488
Hpy166II GTNNAC 1 cut(s) 479
Hpy188I TCNGA 7 cut(s) 97, 156, 321, 549, 646, 975, 999
Hpy188III TCNNGA 5 cut(s) 87, 141, 251, 422, 516
Hpy8I GTNNAC 1 cut(s) 479
HpyAV CCTTC 5 cut(s) 102, 229, 428, 709, 834
HpyCH4III ACNGT 1 cut(s) 874
HpyCH4V TGCA 2 cut(s) 724, 752
HpyF10VI GCNNNNNNNGC 3 cut(s) 758, 800, 1030
HpyF3I CTNAG 6 cut(s) 215, 546, 585, 645, 804, 972
Hsp92II CATG 1 cut(s) 758
Ksp22I TGATCA 1 cut(s) 316
Kzo9I GATC 4 cut(s) 156, 262, 316, 379
LmnI GCTCC 1 cut(s) 61
Lsp1109I GCAGC 4 cut(s) 320, 669, 736, 1055
LweI GCATC 2 cut(s) 847, 981
MaeI CTAG 2 cut(s) 399, 941
MaeIII GTNAC 2 cut(s) 383, 444
MalI GATC 4 cut(s) 158, 264, 318, 381
MboI GATC 4 cut(s) 156, 262, 316, 379
MflI RGATCY 1 cut(s) 156
MhlI GDGCHC 1 cut(s) 369
MlyI GAGTC 2 cut(s) 15, 50
MroXI GAANNNNTTC 1 cut(s) 468
MseI TTAA 1 cut(s) 293
MspR9I CCNGG 3 cut(s) 620, 708, 890
MvaI CCWGG 3 cut(s) 620, 708, 890
MwoI GCNNNNNNNGC 3 cut(s) 758, 800, 1030
NdeII GATC 4 cut(s) 156, 262, 316, 379
NlaIII CATG 1 cut(s) 758
NlaIV GGNNCC 2 cut(s) 63, 956
NspV TTCGAA 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 468
PfeI GAWTC 5 cut(s) 137, 418, 425, 464, 572
PkrI GCNGC 4 cut(s) 310, 659, 726, 1045
PleI GAGTC 2 cut(s) 14, 49
PpsI GAGTC 2 cut(s) 14, 49
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 3 cut(s) 618, 706, 888
PspGI CCWGG 3 cut(s) 618, 706, 888
PspN4I GGNNCC 2 cut(s) 63, 956
PspPI GGNCC 2 cut(s) 89, 912
PspPPI RGGWCCY 1 cut(s) 89
PstI CTGCAG 1 cut(s) 726
PsuI RGATCY 1 cut(s) 156
RsaI GTAC 2 cut(s) 720, 825
RsaNI GTAC 2 cut(s) 719, 824
SaqAI TTAA 1 cut(s) 293
SatI GCNGC 4 cut(s) 309, 658, 725, 1044
Sau3AI GATC 4 cut(s) 156, 262, 316, 379
Sau96I GGNCC 2 cut(s) 89, 912
SchI GAGTC 2 cut(s) 15, 50
ScrFI CCNGG 3 cut(s) 620, 708, 890
SduI GDGCHC 1 cut(s) 369
SfaNI GCATC 2 cut(s) 847, 981
SfcI CTRYAG 1 cut(s) 722
SfuI TTCGAA 1 cut(s) 330
SinI GGWCC 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
SsiI CCGC 1 cut(s) 1024
SspMI CTAG 2 cut(s) 399, 941
StyD4I CCNGG 3 cut(s) 618, 706, 888
StyI CCWWGG 2 cut(s) 429, 852
TaaI ACNGT 1 cut(s) 874
TaqI TCGA 2 cut(s) 140, 330
TatI WGTACW 1 cut(s) 823
TfiI GAWTC 5 cut(s) 137, 418, 425, 464, 572
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 1 cut(s) 504
TseI GCWGC 4 cut(s) 308, 657, 724, 1043
TspDTI ATGAA 7 cut(s) 303, 318, 387, 564, 686, 733, 996
TspRI CASTG 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 89
XapI RAATTY 4 cut(s) 55, 333, 1004, 1052
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 2 cut(s) 399, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.