Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002577.1

Orthogroup ID

OG0002008

Physical Location & Seq

Genomic Coordinates Reverse (-)

3548 .. 5264

Gene Structure 1717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002577.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgggagtcaaggacaagaagaagaacaaggagcttgcccagagaaatttggagcctgttgaaaaggataactcgaccaaagcggcgaatgacaagaaaaagacaaagaaactgaggaaaggaaaaggaaagaaggtgaagaacaatcaggatttggatgatccctctaataccaatgccgcagatgatcagagccaattcgaagttcagggagagactgcaggaagtgctgaaatgaggggtccttcttttatagaggaactactttcggtgatcccaaatgcgcagtactataaaagaggcacttatgacttgaaaaagattatagagtatgcaaataaaaaggaattcacttctttaattgttgttcataccaatcgccgggaaccaggttggtctctcagactttccttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Brix

Protein Analysis

138

Amino Acids

15.7

Weight (kDa)

9.65

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38720 AT5G38720 AT5G38720
fragaria_vesca	FvH4_6g45790 FvH4_6g45790 FvH4_6g45790 FvH4_6g45790
malus_domestica	MD09G1079700.v1.1 MD17G1070200.v1.1
prunus_persica	Prupe.3G244000_v2.0.a1
pyrus_communis	pycom09g00650 pycom17g07020
rosa_chinensis	RchiOBHm_Chr2g0163971
rosa_laevigata	RLG00000000862 RLG00000001697 RLG00000008129 RLG00000008131 RLG00000013806 RLG00000014188 RLG00000021430
rosa_multiflora	Rmu_sc0002577.1_g000001 Rmu_sc0028598.1_g000001 Rmu_ssc0000432.1_g000022
rosa_roxburghii	Rroxscaffold_1G00074010 Rroxscaffold_2G00086880 Rroxscaffold_5G00353940
rosa_rugosa	Rorug02G0505300 Rorug02G0505400 Rorug02G0505500 Rorug02G0505600 Rorug02G0505700 Rorug02G0505800 Rorug04G0195700
rosa_samantha	Rh2AG391800 Rh2AG573900 Rh2BG584700 Rh2CG555600 Rh2DG594000 Rh4AG031000 Rh5BG452800 Rh6AG080600 Rh6CG040800 Rh6CG095900 Rh6DG018800
rosa_wichuraiana	Rw2G047470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	285
AciI	CCGC	2 cut(s)	83, 180
AclWI	GGATC	2 cut(s)	155, 268
AcsI	RAATTY	2 cut(s)	46, 347
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	62, 316
AjnI	CCWGG	1 cut(s)	388
AjuI	GAANNNNNNNTTGG	2 cut(s)	189, 221
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	209, 402
AlwI	GGATC	2 cut(s)	155, 268
ApoI	RAATTY	2 cut(s)	46, 347
AspLEI	GCGC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	383
AsuHPI	GGTGA	2 cut(s)	148, 283
AsuII	TTCGAA	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	242
BciT130I	CCWGG	1 cut(s)	390
BclI	TGATCA	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	383
BcoDI	GTCTC	2 cut(s)	209, 402
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	2 cut(s)	84, 180
BlsI	GCNGC	2 cut(s)	85, 181
BmcAI	AGTACT	1 cut(s)	290
Bme1390I	CCNGG	2 cut(s)	383, 390
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	3 cut(s)	54, 243, 387
BmrFI	CCNGG	2 cut(s)	383, 390
Bpu14I	TTCGAA	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	402
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	390
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	2 cut(s)	104, 415
BsiSI	CCGG	1 cut(s)	382
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	209, 402
Bso31I	GGTCTC	1 cut(s)	402
Bsp119I	TTCGAA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	160, 187, 273
BspACI	CCGC	2 cut(s)	83, 180
BspCNI	CTCAG	2 cut(s)	105, 414
BspLI	GGNNCC	3 cut(s)	54, 243, 387
BspMAI	CTGCAG	1 cut(s)	223
BspPI	GGATC	2 cut(s)	155, 268
BspT104I	TTCGAA	1 cut(s)	201
BspTNI	GGTCTC	1 cut(s)	402
BssMI	GATC	3 cut(s)	160, 187, 273
Bst2UI	CCWGG	1 cut(s)	390
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	113, 401
BstF5I	GGATG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	286
BstKTI	GATC	3 cut(s)	163, 190, 276
BstMAI	GTCTC	2 cut(s)	209, 402
BstMBI	GATC	3 cut(s)	160, 187, 273
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstNI	CCWGG	1 cut(s)	390
BstSCI	CCNGG	2 cut(s)	381, 388
BstSFI	CTRYAG	1 cut(s)	219
BtsCI	GGATG	1 cut(s)	163
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	286
Cfr13I	GGNCC	1 cut(s)	242
CsiI	ACCWGGT	1 cut(s)	388
Csp6I	GTAC	1 cut(s)	289
CviJI	RGCY	3 cut(s)	34, 55, 195
CviKI_1	RGCY	3 cut(s)	34, 55, 195
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	2 cut(s)	113, 401
DpnI	GATC	3 cut(s)	162, 189, 275
DpnII	GATC	3 cut(s)	160, 187, 273
Eco31I	GGTCTC	1 cut(s)	402
Eco47I	GGWCC	1 cut(s)	242
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRI	GAATTC	1 cut(s)	347
EcoRII	CCWGG	1 cut(s)	388
FaiI	YATR	6 cut(s)	254, 294, 309, 326, 333, 372
FalI	AAGNNNNNCTT	2 cut(s)	289, 321
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	84, 180
FokI	GGATG	1 cut(s)	170
Fsp4HI	GCNGC	2 cut(s)	84, 180
FspI	TGCGCA	1 cut(s)	285
GlaI	GCGC	1 cut(s)	285
GluI	GCNGC	2 cut(s)	84, 180
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	284
HinP1I	GCGC	1 cut(s)	284
HinfI	GANTC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	2 cut(s)	148, 283
Hpy188I	TCNGA	3 cut(s)	192, 404, 416
Hpy188III	TCNNGA	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	127, 255
HpyCH4V	TGCA	2 cut(s)	221, 335
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpyF3I	CTNAG	2 cut(s)	113, 401
HspAI	GCGC	1 cut(s)	284
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	3 cut(s)	160, 187, 273
LmnI	GCTCC	2 cut(s)	31, 52
LpnPI	CCDG	8 cut(s)	53, 69, 134, 194, 207, 375, 395, 402
MabI	ACCWGGT	1 cut(s)	388
MalI	GATC	3 cut(s)	162, 189, 275
MboI	GATC	3 cut(s)	160, 187, 273
MboII	GAAGA	3 cut(s)	31, 34, 151
MluCI	AATT	4 cut(s)	46, 197, 347, 360
MlyI	GAGTC	1 cut(s)	15
MnlI	CCTC	5 cut(s)	108, 175, 231, 250, 293
MseI	TTAA	1 cut(s)	359
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	2 cut(s)	383, 390
MvaI	CCWGG	1 cut(s)	390
MwoI	GCNNNNNNNGC	1 cut(s)	227
NciI	CCSGG	1 cut(s)	383
NdeII	GATC	3 cut(s)	160, 187, 273
NlaIV	GGNNCC	3 cut(s)	54, 243, 387
NsbI	TGCGCA	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	85, 181
PleI	GAGTC	1 cut(s)	14
PpsI	GAGTC	1 cut(s)	14
PpuMI	RGGWCCY	1 cut(s)	242
Psp5II	RGGWCCY	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	388
PspGI	CCWGG	1 cut(s)	388
PspN4I	GGNNCC	3 cut(s)	54, 243, 387
PspPI	GGNCC	1 cut(s)	242
PspPPI	RGGWCCY	1 cut(s)	242
PstI	CTGCAG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
SaqAI	TTAA	1 cut(s)	359
SatI	GCNGC	2 cut(s)	84, 180
Sau3AI	GATC	3 cut(s)	160, 187, 273
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	290
SchI	GAGTC	1 cut(s)	15
ScrFI	CCNGG	2 cut(s)	383, 390
SetI	ASST	3 cut(s)	36, 138, 394
SexAI	ACCWGGT	1 cut(s)	388
SfcI	CTRYAG	1 cut(s)	219
SfuI	TTCGAA	1 cut(s)	201
SinI	GGWCC	1 cut(s)	242
Sse9I	AATT	4 cut(s)	46, 197, 347, 360
SsiI	CCGC	2 cut(s)	83, 180
StyD4I	CCNGG	2 cut(s)	381, 388
TaqI	TCGA	2 cut(s)	74, 201
TasI	AATT	4 cut(s)	46, 197, 347, 360
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	2 cut(s)	86, 182
Tru1I	TTAA	1 cut(s)	359
Tru9I	TTAA	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	359
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	2 cut(s)	46, 347
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.