Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002008

Physical Location & Seq

Genomic Coordinates Forward (+)

9031329 .. 9034796

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00086880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGGAGTCAAGGACAAGAAGACCAAGAAGAACAAGGAGTCTGCCCAGAGAAATTTGGAGCCTGTTGAAAAGGATAAAAAGTCAGGACCTTCAGAGATGAGAAAGAGAAAAAGAGACAAGGAAAACAACGGCGATTCGAGAAGAGTTGTTCAGATCTCTATTGAAGATAACACTCCTAAAGCAGCCAATGACAAGAAAAAGACAAAGAAACTGAGGAAAGGAAAAGTAAAGAAGGTGAAGAACAATCAGGATTTGGATGATCCCTCGAATACCGATGGTTTTGATGAATTAAATGACGATGAAGCAGCAGATGATCAGAGCCAATTCGAAATTCAGGGAGAGACTGGAAGTGCTGAAATGGTGCTCAATGAAGATGATCGTAACTCAAAGAAAGCTAGGAAAAAGAAAAAGAAGAATCGTGATTCCTTGGAAGGTGGGAAGTTACTGGAAAAGAGAGTGGAAGCTGTTCAAGGTGAACCTTGTCATCTCTCTTCAGTGGATGAGGACTGCTTCAGAGAAATAACAAGCATATCCAAGAAATCTCAGAAAAAGAAAAGGAGGGATATGGATTCATCAAAACCTAAGAAGTCATTGGAAAAGAAAGAAGAAGCTAATCAGGAGGATGTTTACCTTATCTCCTCTGAGGATGAGGAAGCCCGAGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

RRP7

Protein Analysis

222

Amino Acids

25.41

Weight (kDa)

9.11

Isoelectric Point (pI)

45.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002008)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38720 AT5G38720 AT5G38720
fragaria_vesca	FvH4_6g45790 FvH4_6g45790 FvH4_6g45790 FvH4_6g45790
malus_domestica	MD09G1079700.v1.1 MD17G1070200.v1.1
prunus_persica	Prupe.3G244000_v2.0.a1
pyrus_communis	pycom09g00650 pycom17g07020
rosa_chinensis	RchiOBHm_Chr2g0163971
rosa_laevigata	RLG00000000862 RLG00000001697 RLG00000008129 RLG00000008131 RLG00000013806 RLG00000014188 RLG00000021430
rosa_multiflora	Rmu_sc0002577.1_g000001 Rmu_sc0028598.1_g000001 Rmu_ssc0000432.1_g000022
rosa_roxburghii	Rroxscaffold_1G00074010 Rroxscaffold_2G00086880 Rroxscaffold_5G00353940
rosa_rugosa	Rorug02G0505300 Rorug02G0505400 Rorug02G0505500 Rorug02G0505600 Rorug02G0505700 Rorug02G0505800 Rorug04G0195700
rosa_samantha	Rh2AG391800 Rh2AG573900 Rh2BG584700 Rh2CG555600 Rh2DG594000 Rh4AG031000 Rh5BG452800 Rh6AG080600 Rh6CG040800 Rh6CG095900 Rh6DG018800
rosa_wichuraiana	Rw2G047470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	2 cut(s)	52, 330
AcuI	CTGAAG	3 cut(s)	75, 477, 496
AgsI	TTSAA	3 cut(s)	68, 164, 470
AjuI	GAANNNNNNNTTGG	2 cut(s)	315, 347
AluBI	AGCT	3 cut(s)	395, 464, 611
AluI	AGCT	3 cut(s)	395, 464, 611
Alw21I	GWGCWC	1 cut(s)	366
Alw26I	GTCTC	2 cut(s)	108, 335
AlwI	GGATC	1 cut(s)	254
Ama87I	CYCGRG	1 cut(s)	657
ApeKI	GCWGC	2 cut(s)	182, 305
ApoI	RAATTY	2 cut(s)	52, 330
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	2 cut(s)	247, 485
AsuII	TTCGAA	1 cut(s)	327
AvaI	CYCGRG	1 cut(s)	657
AvaII	GGWCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	366
BbvI	GCAGC	2 cut(s)	194, 317
BccI	CCATC	1 cut(s)	269
BceAI	ACGGC	1 cut(s)	145
BclI	TGATCA	1 cut(s)	313
BcoDI	GTCTC	2 cut(s)	108, 335
BfaI	CTAG	1 cut(s)	396
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	2 cut(s)	183, 306
BlsI	GCNGC	2 cut(s)	184, 307
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	657
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	26
Bpu14I	TTCGAA	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	620, 650
Bse1I	ACTGG	2 cut(s)	349, 450
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	4 cut(s)	262, 505, 628, 652
BseMII	CTCAG	3 cut(s)	203, 557, 633
BseNI	ACTGG	2 cut(s)	349, 450
BseRI	GAGGAG	1 cut(s)	628
BseXI	GCAGC	2 cut(s)	194, 317
BsiHKAI	GWGCWC	1 cut(s)	366
BsiHKCI	CYCGRG	1 cut(s)	657
BsmAI	GTCTC	2 cut(s)	108, 335
BsoBI	CYCGRG	1 cut(s)	657
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	366
Bsp143I	GATC	4 cut(s)	153, 259, 313, 376
BspCNI	CTCAG	3 cut(s)	204, 556, 634
BspLI	GGNNCC	1 cut(s)	60
BspPI	GGATC	1 cut(s)	254
BspT104I	TTCGAA	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	349, 450
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	4 cut(s)	153, 259, 313, 376
BssT1I	CCWWGG	1 cut(s)	426
Bst6I	CTCTTC	2 cut(s)	136, 496
BstBI	TTCGAA	1 cut(s)	327
BstDEI	CTNAG	4 cut(s)	212, 543, 582, 642
BstF5I	GGATG	4 cut(s)	262, 505, 628, 652
BstKTI	GATC	4 cut(s)	156, 262, 316, 379
BstMAI	GTCTC	2 cut(s)	108, 335
BstMBI	GATC	4 cut(s)	153, 259, 313, 376
BstV1I	GCAGC	2 cut(s)	194, 317
BstV2I	GAAGAC	1 cut(s)	26
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BtsCI	GGATG	4 cut(s)	262, 505, 628, 652
BtsIMutI	CAGTG	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	86
CviJI	RGCY	7 cut(s)	61, 185, 321, 395, 464, 611, 656
CviKI_1	RGCY	7 cut(s)	61, 185, 321, 395, 464, 611, 656
DdeI	CTNAG	4 cut(s)	212, 543, 582, 642
DpnI	GATC	4 cut(s)	155, 261, 315, 378
DpnII	GATC	4 cut(s)	153, 259, 313, 376
Eam1104I	CTCTTC	2 cut(s)	136, 496
EarI	CTCTTC	2 cut(s)	136, 496
Eco130I	CCWWGG	1 cut(s)	426
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	3 cut(s)	75, 477, 496
Eco88I	CYCGRG	1 cut(s)	657
EcoO109I	RGGNCCY	1 cut(s)	86
EcoT14I	CCWWGG	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	426
FaiI	YATR	2 cut(s)	530, 566
FbaI	TGATCA	1 cut(s)	313
Fnu4HI	GCNGC	2 cut(s)	183, 306
FokI	GGATG	4 cut(s)	269, 512, 635, 659
Fsp4HI	GCNGC	2 cut(s)	183, 306
FspBI	CTAG	1 cut(s)	396
GluI	GCNGC	2 cut(s)	183, 306
HinfI	GANTC	6 cut(s)	6, 38, 134, 415, 422, 569
HphI	GGTGA	2 cut(s)	247, 485
Hpy166II	GTNNAC	2 cut(s)	476, 628
Hpy188I	TCNGA	6 cut(s)	94, 153, 318, 515, 546, 643
Hpy188III	TCNNGA	5 cut(s)	84, 138, 248, 419, 617
Hpy8I	GTNNAC	2 cut(s)	476, 628
HpyAV	CCTTC	3 cut(s)	99, 226, 425
HpyF3I	CTNAG	4 cut(s)	212, 543, 582, 642
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	153, 259, 313, 376
LmnI	GCTCC	1 cut(s)	58
LpnPI	CCDG	8 cut(s)	59, 69, 75, 233, 320, 330, 431, 602
Lsp1109I	GCAGC	2 cut(s)	194, 317
MaeI	CTAG	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	380, 441
MalI	GATC	4 cut(s)	155, 261, 315, 378
MboI	GATC	4 cut(s)	153, 259, 313, 376
MboII	GAAGA	9 cut(s)	31, 40, 153, 176, 250, 383, 424, 483, 617
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	366
MluCI	AATT	4 cut(s)	52, 287, 323, 330
MlyI	GAGTC	2 cut(s)	15, 47
MnlI	CCTC	8 cut(s)	207, 274, 496, 552, 613, 637, 643, 649
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	1 cut(s)	290
NdeII	GATC	4 cut(s)	153, 259, 313, 376
NlaIV	GGNNCC	1 cut(s)	60
NspV	TTCGAA	1 cut(s)	327
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	4 cut(s)	134, 415, 422, 569
PkrI	GCNGC	2 cut(s)	184, 307
PleI	GAGTC	2 cut(s)	14, 46
PpsI	GAGTC	2 cut(s)	14, 46
PpuMI	RGGWCCY	1 cut(s)	86
Psp5II	RGGWCCY	1 cut(s)	86
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	1 cut(s)	86
PspPPI	RGGWCCY	1 cut(s)	86
PsuI	RGATCY	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	183, 306
Sau3AI	GATC	4 cut(s)	153, 259, 313, 376
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	2 cut(s)	15, 47
SduI	GDGCHC	1 cut(s)	366
SfuI	TTCGAA	1 cut(s)	327
SinI	GGWCC	1 cut(s)	86
Sse9I	AATT	4 cut(s)	52, 287, 323, 330
SspMI	CTAG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	426
TaqI	TCGA	3 cut(s)	137, 266, 327
TasI	AATT	4 cut(s)	52, 287, 323, 330
TfiI	GAWTC	4 cut(s)	134, 415, 422, 569
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	501
TseI	GCWGC	2 cut(s)	182, 305
TspDTI	ATGAA	4 cut(s)	300, 315, 384, 561
TspRI	CASTG	1 cut(s)	501
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	2 cut(s)	52, 330
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.