Rh2CG555600

Ribosomal RNA-processing protein 7 (RRP7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002008
Physical Location & Seq
Reverse (-)
73363006 .. 73365269
2264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG555600.1

Sequence Viewer

Length: 636 bp
ATGGTGACCCCTGACGATGAAGCAGCAGATGATCAGAGCCAATTCGAAATTCAGGGAGAGACTGGAAGTGCTGAAATGGTGCTCAATGAAGATGATCGTAACTCAAAGAAAGCTAGGAAAAAGAAAAAGAAGAATCGTGATTCCTTGGAAGGTGGGAAGTTACTGGAAAAGAGAGTGGAAGCTGTTCAAGGTGAACCTTGTCATCTCTCTTCAGTGGATGAGGACTGCTCAAGAGAAATAACAAGCATATCCAAGAAATCTCAGAAAAAGAAAAGGAGGGATATGGATTCATCAAAACCTAAGAACTCATTGGAAAAGAAAGAAGAAGCTAACCAGGAGGATGAAAGAAAAGAAAGAGAAGCCCTTTCTGCTGAGGAGGGATGGCAACTTGTACAACATCATAAAGGAAGGAAGAAAACCAAGGATGCTGATGGAATTACAGTAGGCTCTGTTGCCCAGGCTGTTGTGGAGAGCAAGAGGGCCAAGAAGAAGAATACAGATGTTGGGCTAGACTTTTACCGGTTCCAAAGGAAAGAAGCTCAGAGGAATGAAATTATGATGCTTCAGAGCAAATTTGAGCAGGATAAAAAGCGGATACAGCAGATAAGAGCAGCAAGGAAATTCAAGCCATACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03008 map03008
Pfam Domains
Protein Families
RRP7

Protein Analysis

211

Amino Acids

24.33

Weight (kDa)

9.36

Isoelectric Point (pI)

40.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRP7 PF12923 107 - 211 3.2e-21 Ribosomal RNA-processing protein 7 (RRP7) C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 592
AcsI RAATTY 3 cut(s) 48, 572, 620
AcuI CTGAAG 2 cut(s) 195, 548
AfaI GTAC 1 cut(s) 393
AgeI ACCGGT 1 cut(s) 519
AgsI TTSAA 2 cut(s) 188, 625
AjnI CCWGG 2 cut(s) 333, 456
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 65
AluBI AGCT 4 cut(s) 113, 182, 329, 539
AluI AGCT 4 cut(s) 113, 182, 329, 539
Alw21I GWGCWC 1 cut(s) 84
Alw26I GTCTC 1 cut(s) 53
AoxI GGCC 1 cut(s) 480
ApeKI GCWGC 2 cut(s) 23, 611
ApoI RAATTY 3 cut(s) 48, 572, 620
AsiGI ACCGGT 1 cut(s) 519
Asp700I GAANNNNTTC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 480
AsuHPI GGTGA 2 cut(s) 16, 203
AsuII TTCGAA 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 84
BbvCI CCTCAGC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 35, 623
BccI CCATC 2 cut(s) 375, 425
BciT130I CCWGG 2 cut(s) 335, 458
BciVI GTATCC 1 cut(s) 588
BclI TGATCA 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 2 cut(s) 114, 509
BfuI GTATCC 1 cut(s) 588
BisI GCNGC 2 cut(s) 24, 612
BlsI GCNGC 2 cut(s) 25, 613
Bme1390I CCNGG 2 cut(s) 335, 458
BmgT120I GGNCC 1 cut(s) 480
BmiI GGNNCC 1 cut(s) 524
BmrFI CCNGG 2 cut(s) 335, 458
BmsI GCATC 2 cut(s) 415, 549
BplI GAGNNNNNCTC 2 cut(s) 212, 244
Bpu10I CCTNAGC 1 cut(s) 372
Bpu14I TTCGAA 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 214
BsaJI CCNNGG 3 cut(s) 144, 420, 456
BsaWI WCCGGW 1 cut(s) 519
Bse118I RCCGGY 1 cut(s) 519
Bse1I ACTGG 2 cut(s) 67, 168
BseBI CCWGG 2 cut(s) 335, 458
BseDI CCNNGG 3 cut(s) 144, 420, 456
BseGI GGATG 4 cut(s) 223, 346, 386, 430
BseMII CTCAG 3 cut(s) 275, 363, 554
BseNI ACTGG 2 cut(s) 67, 168
BseRI GAGGAG 1 cut(s) 389
BseXI GCAGC 2 cut(s) 35, 623
BshFI GGCC 1 cut(s) 482
BshTI ACCGGT 1 cut(s) 519
BsiHKAI GWGCWC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 520
BsmAI GTCTC 1 cut(s) 53
BsnI GGCC 1 cut(s) 482
Bsp119I TTCGAA 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 84
Bsp1407I TGTACA 1 cut(s) 391
Bsp143I GATC 2 cut(s) 31, 94
BspACI CCGC 1 cut(s) 592
BspANI GGCC 1 cut(s) 482
BspCNI CTCAG 3 cut(s) 274, 364, 553
BspLI GGNNCC 1 cut(s) 524
BspT104I TTCGAA 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 519
BsrGI TGTACA 1 cut(s) 391
BsrI ACTGG 2 cut(s) 67, 168
BssAI RCCGGY 1 cut(s) 519
BssECI CCNNGG 3 cut(s) 144, 420, 456
BssMI GATC 2 cut(s) 31, 94
BssT1I CCWWGG 2 cut(s) 144, 420
Bst2UI CCWGG 2 cut(s) 335, 458
Bst4CI ACNGT 1 cut(s) 442
Bst6I CTCTTC 1 cut(s) 214
BstAUI TGTACA 1 cut(s) 391
BstBI TTCGAA 1 cut(s) 45
BstDEI CTNAG 4 cut(s) 261, 300, 372, 540
BstEII GGTNACC 1 cut(s) 4
BstF5I GGATG 4 cut(s) 223, 346, 386, 430
BstKTI GATC 2 cut(s) 34, 97
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 31, 94
BstMWI GCNNNNNNNGC 2 cut(s) 368, 598
BstNI CCWGG 2 cut(s) 335, 458
BstPI GGTNACC 1 cut(s) 4
BstSCI CCNGG 2 cut(s) 333, 456
BstV1I GCAGC 2 cut(s) 35, 623
BsuI GTATCC 1 cut(s) 588
BsuRI GGCC 1 cut(s) 482
BtsCI GGATG 4 cut(s) 223, 346, 386, 430
BtsIMutI CAGTG 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 519
Cfr13I GGNCC 1 cut(s) 480
Csp6I GTAC 1 cut(s) 392
CspAI ACCGGT 1 cut(s) 519
CviQI GTAC 1 cut(s) 392
DdeI CTNAG 4 cut(s) 261, 300, 372, 540
DpnI GATC 2 cut(s) 33, 96
DpnII GATC 2 cut(s) 31, 94
Eam1104I CTCTTC 1 cut(s) 214
EarI CTCTTC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 144, 420
Eco57I CTGAAG 2 cut(s) 195, 548
Eco91I GGTNACC 1 cut(s) 4
EcoO65I GGTNACC 1 cut(s) 4
EcoRII CCWGG 2 cut(s) 333, 456
EcoT14I CCWWGG 2 cut(s) 144, 420
ErhI CCWWGG 2 cut(s) 144, 420
FaiI YATR 5 cut(s) 248, 284, 402, 557, 631
FbaI TGATCA 1 cut(s) 31
Fnu4HI GCNGC 2 cut(s) 24, 612
FokI GGATG 4 cut(s) 230, 353, 393, 437
Fsp4HI GCNGC 2 cut(s) 24, 612
FspBI CTAG 2 cut(s) 114, 509
GluI GCNGC 2 cut(s) 24, 612
HaeIII GGCC 1 cut(s) 482
HapII CCGG 1 cut(s) 520
HinfI GANTC 3 cut(s) 133, 140, 287
HpaII CCGG 1 cut(s) 520
HphI GGTGA 2 cut(s) 16, 203
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 4 cut(s) 36, 264, 543, 567
Hpy188III TCNNGA 2 cut(s) 137, 231
Hpy8I GTNNAC 1 cut(s) 194
HpyAV CCTTC 2 cut(s) 143, 402
HpyCH4III ACNGT 1 cut(s) 442
HpyF10VI GCNNNNNNNGC 2 cut(s) 368, 598
HpyF3I CTNAG 4 cut(s) 261, 300, 372, 540
Ksp22I TGATCA 1 cut(s) 31
Kzo9I GATC 2 cut(s) 31, 94
Lsp1109I GCAGC 2 cut(s) 35, 623
LweI GCATC 2 cut(s) 415, 549
MaeI CTAG 2 cut(s) 114, 509
MaeIII GTNAC 3 cut(s) 4, 98, 159
MalI GATC 2 cut(s) 33, 96
MboI GATC 2 cut(s) 31, 94
MboII GAAGA 7 cut(s) 101, 142, 201, 335, 424, 499, 502
MhlI GDGCHC 1 cut(s) 84
MluCI AATT 6 cut(s) 41, 48, 435, 552, 572, 620
MnlI CCTC 7 cut(s) 214, 270, 331, 367, 370, 471, 537
MroXI GAANNNNTTC 1 cut(s) 183
MspI CCGG 1 cut(s) 520
MspR9I CCNGG 2 cut(s) 335, 458
MvaI CCWGG 2 cut(s) 335, 458
MwoI GCNNNNNNNGC 2 cut(s) 368, 598
NdeII GATC 2 cut(s) 31, 94
NlaIV GGNNCC 1 cut(s) 524
NmuCI GTSAC 1 cut(s) 4
NspV TTCGAA 1 cut(s) 45
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 3 cut(s) 133, 140, 287
PinAI ACCGGT 1 cut(s) 519
PkrI GCNGC 2 cut(s) 25, 613
Psp6I CCWGG 2 cut(s) 333, 456
PspEI GGTNACC 1 cut(s) 4
PspGI CCWGG 2 cut(s) 333, 456
PspN4I GGNNCC 1 cut(s) 524
PspPI GGNCC 1 cut(s) 480
RsaI GTAC 1 cut(s) 393
RsaNI GTAC 1 cut(s) 392
SatI GCNGC 2 cut(s) 24, 612
Sau3AI GATC 2 cut(s) 31, 94
Sau96I GGNCC 1 cut(s) 480
ScrFI CCNGG 2 cut(s) 335, 458
SduI GDGCHC 1 cut(s) 84
SetI ASST 8 cut(s) 115, 154, 184, 193, 199, 301, 331, 541
SfaNI GCATC 2 cut(s) 415, 549
SfuI TTCGAA 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 229
SmoI CTYRAG 1 cut(s) 229
Sse9I AATT 6 cut(s) 41, 48, 435, 552, 572, 620
SsiI CCGC 1 cut(s) 592
SspMI CTAG 2 cut(s) 114, 509
StyD4I CCNGG 2 cut(s) 333, 456
StyI CCWWGG 2 cut(s) 144, 420
TaaI ACNGT 1 cut(s) 442
TaqI TCGA 1 cut(s) 45
TasI AATT 6 cut(s) 41, 48, 435, 552, 572, 620
TatI WGTACW 1 cut(s) 391
TfiI GAWTC 3 cut(s) 133, 140, 287
TscAI CASTG 1 cut(s) 219
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 23, 611
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 5 cut(s) 33, 102, 279, 357, 564
TspRI CASTG 1 cut(s) 219
XapI RAATTY 3 cut(s) 48, 572, 620
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 2 cut(s) 114, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.