Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

19375317 .. 19378465

Gene Structure 3149 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G47840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGACGGGCTGTGTGAATTCTATTTCTCCGCCGCCGGTGACTTTATACCGGCATCGTGCCTCTCCGTCACGGTCGTCCTTCTCATTATCCGGCGATGCCTTACACTCTCTTTACCGGCACCGACGTGTATCAAGATCTCCGTCGATTATCGCTCCCAAATTTCAGATTGTGGCGGCTGAAAAATCGGAGCCTCTGAAAATTATGATATCAGGAGCTCCTGCTTCTGGTAAAGGTACACAATGCGAGCTGATTACTCACAAATATGGTTTGGTGCATATCTCTGCTGGAGATTTGCTGAGGGCTGAAATCGCTTCTGGAAGTGAAAATGGAAGACGTGCTAAAGAACATATGGAGAAAGGACAATTGGTCCCTGATGAAATAGTTGTAATGATGGTAAAAGATCGTTTATCACAGACAGATTCAGAGCAAAAAGGATGGCTTTTGGATGGATATCCAAGGAGTGCATCACAGGCAACAGCTCTCAAGGGATTTGGATTCCAGCCTGATCTATTCATTGTCCTCGAAGTTCCTGAAGAAATTCTAATTGAAAGAGTTGTTGGGCGTCGATTGGATCCTGTCACAGGAAAGATCTACCACTTGAAGTATTCGCCTCCAGAGACAGAAGAGATTGCTGTTAGACTCACCCAACGTTTTGATGATACCGAAGAGAAGGCAAAACTGCGGCTGAAGACTCATAACCAAAATGTGAGTGATGTGCTTTCTATGTACGACGATATAACAATTAAGATCGAGGGAAACCGCTCAAAAGAGGAAGTGTTTGCCCAGATCGATTCTTCTCTGTCCGAATTGCTTCAAGAGAGGAACACTGCTCCAAGTTCACTTTTAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

283

Amino Acids

31.45

Weight (kDa)

7.11

Isoelectric Point (pI)

60.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_18	PF13238	67 - 189	8.1e-08	AAA domain
ADK	PF00406	69 - 245	1.1e-47	Adenylate kinase
AAA_17	PF13207	71 - 189	7e-28	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	117
AccBSI	CCGCTC	1 cut(s)	762
AciI	CCGC	5 cut(s)	29, 32, 173, 682, 760
AclI	AACGTT	1 cut(s)	649
AclWI	GGATC	2 cut(s)	566, 579
AcsI	RAATTY	3 cut(s)	16, 158, 537
AcuI	CTGAAG	2 cut(s)	552, 707
AcyI	GRCGYC	1 cut(s)	562
AfaI	GTAC	2 cut(s)	235, 728
AfiI	CCNNNNNNNGG	2 cut(s)	224, 581
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	3 cut(s)	548, 601, 815
AhdI	GACNNNNNGTC	1 cut(s)	365
AjiI	CACGTC	2 cut(s)	125, 335
AjuI	GAANNNNNNNTTGG	4 cut(s)	347, 379, 540, 572
AleI	CACNNNNGTG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	215, 247, 479
AluI	AGCT	3 cut(s)	215, 247, 479
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	611
AlwI	GGATC	2 cut(s)	566, 579
ApoI	RAATTY	3 cut(s)	16, 158, 537
Asp700I	GAANNNNTTC	2 cut(s)	537, 810
AspS9I	GGNCC	1 cut(s)	367
AsuHPI	GGTGA	2 cut(s)	49, 634
AvaII	GGWCC	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	571
BanI	GGYRCC	1 cut(s)	117
BanII	GRGCYC	1 cut(s)	217
BbsI	GAAGAC	2 cut(s)	337, 695
Bbv12I	GWGCWC	1 cut(s)	217
BbvCI	CCTCAGC	1 cut(s)	296
BccI	CCATC	3 cut(s)	385, 429, 440
BcoDI	GTCTC	1 cut(s)	611
BglII	AGATCT	2 cut(s)	134, 588
BisI	GCNGC	3 cut(s)	32, 174, 683
BlsI	GCNGC	3 cut(s)	33, 175, 684
Bme18I	GGWCC	1 cut(s)	367
BmeRI	GACNNNNNGTC	1 cut(s)	365
BmgBI	CACGTC	2 cut(s)	125, 335
BmgT120I	GGNCC	1 cut(s)	367
BmiI	GGNNCC	4 cut(s)	119, 189, 369, 573
BmsI	GCATC	3 cut(s)	61, 85, 473
BpiI	GAAGAC	2 cut(s)	337, 695
BpmI	CTGGAG	2 cut(s)	306, 597
Bpu10I	CCTNAGC	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	467
Bsa29I	ATCGAT	1 cut(s)	789
BsaBI	GATNNNNATC	1 cut(s)	450
BsaHI	GRCGYC	1 cut(s)	562
BsaJI	CCNNGG	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 581
Bse118I	RCCGGY	3 cut(s)	34, 48, 114
Bse8I	GATNNNNATC	1 cut(s)	450
BseCI	ATCGAT	1 cut(s)	789
BseDI	CCNNGG	1 cut(s)	455
BseGI	GGATG	2 cut(s)	440, 451
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	224, 581
BseMII	CTCAG	1 cut(s)	287
Bsh1285I	CGRYCG	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	117
BshVI	ATCGAT	1 cut(s)	789
BsiEI	CGRYCG	1 cut(s)	74
BsiHKAI	GWGCWC	1 cut(s)	217
BsiSI	CCGG	4 cut(s)	35, 49, 90, 115
BslFI	GGGAC	1 cut(s)	353
BslI	CCNNNNNNNGG	2 cut(s)	224, 581
BsmAI	GTCTC	1 cut(s)	611
BsmFI	GGGAC	1 cut(s)	353
Bsp1286I	GDGCHC	1 cut(s)	217
Bsp143I	GATC	7 cut(s)	134, 400, 505, 571, 588, 747, 786
BspACI	CCGC	5 cut(s)	29, 32, 173, 682, 760
BspCNI	CTCAG	1 cut(s)	288
BspDI	ATCGAT	1 cut(s)	789
BspLI	GGNNCC	4 cut(s)	119, 189, 369, 573
BspPI	GGATC	2 cut(s)	566, 579
BspT107I	GGYRCC	1 cut(s)	117
BsrBI	CCGCTC	1 cut(s)	762
BsrFI	RCCGGY	3 cut(s)	34, 48, 114
BssAI	RCCGGY	3 cut(s)	34, 48, 114
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	7 cut(s)	134, 400, 505, 571, 588, 747, 786
BssNI	GRCGYC	1 cut(s)	562
BssT1I	CCWWGG	1 cut(s)	455
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	2 cut(s)	618, 660
BstACI	GRCGYC	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	296
BstENI	CCTNNNNNAGG	1 cut(s)	579
BstF5I	GGATG	2 cut(s)	440, 451
BstKTI	GATC	7 cut(s)	137, 403, 508, 574, 591, 750, 789
BstMAI	GTCTC	1 cut(s)	611
BstMBI	GATC	7 cut(s)	134, 400, 505, 571, 588, 747, 786
BstMCI	CGRYCG	1 cut(s)	74
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 470
BstV2I	GAAGAC	2 cut(s)	337, 695
BstX2I	RGATCY	3 cut(s)	134, 571, 588
BstYI	RGATCY	3 cut(s)	134, 571, 588
Bsu15I	ATCGAT	1 cut(s)	789
BsuTUI	ATCGAT	1 cut(s)	789
BtgZI	GCGATG	1 cut(s)	108
BtrI	CACGTC	2 cut(s)	125, 335
BtsCI	GGATG	2 cut(s)	440, 451
BtsI	GCAGTG	1 cut(s)	825
BtsIMutI	CAGTG	1 cut(s)	825
Cac8I	GCNNGC	1 cut(s)	245
Cfr10I	RCCGGY	3 cut(s)	34, 48, 114
Cfr13I	GGNCC	1 cut(s)	367
ClaI	ATCGAT	1 cut(s)	789
CseI	GACGC	1 cut(s)	551
Csp6I	GTAC	2 cut(s)	234, 727
CviQI	GTAC	2 cut(s)	234, 727
DdeI	CTNAG	1 cut(s)	296
DpnI	GATC	7 cut(s)	136, 402, 507, 573, 590, 749, 788
DpnII	GATC	7 cut(s)	134, 400, 505, 571, 588, 747, 786
DriI	GACNNNNNGTC	1 cut(s)	365
Eam1104I	CTCTTC	2 cut(s)	618, 660
Eam1105I	GACNNNNNGTC	1 cut(s)	365
EarI	CTCTTC	2 cut(s)	618, 660
EciI	GGCGGA	1 cut(s)	18
Ecl136II	GAGCTC	1 cut(s)	215
Eco130I	CCWWGG	1 cut(s)	455
Eco24I	GRGCYC	1 cut(s)	217
Eco32I	GATATC	2 cut(s)	207, 452
Eco47I	GGWCC	1 cut(s)	367
Eco53kI	GAGCTC	1 cut(s)	215
Eco57I	CTGAAG	2 cut(s)	552, 707
EcoICRI	GAGCTC	1 cut(s)	215
EcoNI	CCTNNNNNAGG	1 cut(s)	579
EcoRI	GAATTC	1 cut(s)	16
EcoRV	GATATC	2 cut(s)	207, 452
EcoT14I	CCWWGG	1 cut(s)	455
EcoT38I	GRGCYC	1 cut(s)	217
ErhI	CCWWGG	1 cut(s)	455
FaiI	YATR	9 cut(s)	46, 203, 264, 276, 348, 350, 696, 725, 737
FalI	AAGNNNNNCTT	2 cut(s)	423, 455
FaqI	GGGAC	1 cut(s)	353
FauNDI	CATATG	1 cut(s)	348
Fnu4HI	GCNGC	3 cut(s)	32, 174, 683
FokI	GGATG	2 cut(s)	447, 458
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	3 cut(s)	32, 174, 683
GluI	GCNGC	3 cut(s)	32, 174, 683
GsuI	CTGGAG	2 cut(s)	306, 597
HapII	CCGG	4 cut(s)	35, 49, 90, 115
HgaI	GACGC	1 cut(s)	551
Hin1I	GRCGYC	1 cut(s)	562
HinfI	GANTC	5 cut(s)	419, 495, 639, 691, 791
HpaII	CCGG	4 cut(s)	35, 49, 90, 115
HphI	GGTGA	2 cut(s)	49, 634
Hpy166II	GTNNAC	2 cut(s)	236, 839
Hpy188I	TCNGA	5 cut(s)	165, 187, 195, 424, 805
Hpy188III	TCNNGA	6 cut(s)	132, 210, 315, 530, 614, 815
Hpy8I	GTNNAC	2 cut(s)	236, 839
Hpy99I	CGWCG	4 cut(s)	126, 145, 567, 734
HpyAV	CCTTC	2 cut(s)	88, 664
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4IV	ACGT	3 cut(s)	124, 334, 649
HpyCH4V	TGCA	2 cut(s)	274, 464
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 470
HpyF3I	CTNAG	1 cut(s)	296
HpySE526I	ACGT	3 cut(s)	124, 334, 649
Hsp92I	GRCGYC	1 cut(s)	562
Kzo9I	GATC	7 cut(s)	134, 400, 505, 571, 588, 747, 786
LmnI	GCTCC	5 cut(s)	157, 187, 212, 220, 835
LweI	GCATC	3 cut(s)	61, 85, 473
MaeII	ACGT	3 cut(s)	124, 334, 649
MaeIII	GTNAC	3 cut(s)	37, 66, 577
MalI	GATC	7 cut(s)	136, 402, 507, 573, 590, 749, 788
MbiI	CCGCTC	1 cut(s)	762
MboI	GATC	7 cut(s)	134, 400, 505, 571, 588, 747, 786
MboII	GAAGA	6 cut(s)	342, 545, 635, 677, 700, 786
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	3 cut(s)	134, 571, 588
MhlI	GDGCHC	1 cut(s)	217
MluCI	AATT	8 cut(s)	16, 158, 198, 362, 537, 543, 741, 806
MlyI	GAGTC	2 cut(s)	633, 685
MnlI	CCTC	8 cut(s)	70, 201, 291, 530, 621, 745, 763, 813
MroXI	GAANNNNTTC	2 cut(s)	537, 810
MseI	TTAA	2 cut(s)	744, 845
MslI	CAYNNNNRTG	2 cut(s)	123, 261
MspI	CCGG	4 cut(s)	35, 49, 90, 115
MunI	CAATTG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	308, 470
NdeI	CATATG	1 cut(s)	348
NdeII	GATC	7 cut(s)	134, 400, 505, 571, 588, 747, 786
NlaIV	GGNNCC	4 cut(s)	119, 189, 369, 573
NmuCI	GTSAC	3 cut(s)	37, 66, 577
OliI	CACNNNNGTG	1 cut(s)	123
PdmI	GAANNNNTTC	2 cut(s)	537, 810
PfeI	GAWTC	3 cut(s)	419, 495, 791
PkrI	GCNGC	3 cut(s)	33, 175, 684
PleI	GAGTC	2 cut(s)	633, 685
PpsI	GAGTC	2 cut(s)	633, 685
Psp124BI	GAGCTC	1 cut(s)	217
Psp1406I	AACGTT	1 cut(s)	649
PspN4I	GGNNCC	4 cut(s)	119, 189, 369, 573
PspPI	GGNCC	1 cut(s)	367
PsuI	RGATCY	3 cut(s)	134, 571, 588
RsaI	GTAC	2 cut(s)	235, 728
RsaNI	GTAC	2 cut(s)	234, 727
RseI	CAYNNNNRTG	2 cut(s)	123, 261
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	744, 845
SatI	GCNGC	3 cut(s)	32, 174, 683
Sau3AI	GATC	7 cut(s)	134, 400, 505, 571, 588, 747, 786
Sau96I	GGNCC	1 cut(s)	367
SchI	GAGTC	2 cut(s)	633, 685
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	7 cut(s)	127, 217, 235, 249, 337, 481, 652
SfaNI	GCATC	3 cut(s)	61, 85, 473
SgrAI	CRCCGGYG	1 cut(s)	34
SinI	GGWCC	1 cut(s)	367
SmiMI	CAYNNNNRTG	2 cut(s)	123, 261
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	8 cut(s)	16, 158, 198, 362, 537, 543, 741, 806
SsiI	CCGC	5 cut(s)	29, 32, 173, 682, 760
SstI	GAGCTC	1 cut(s)	217
StyI	CCWWGG	1 cut(s)	455
TaaI	ACNGT	1 cut(s)	72
TaiI	ACGT	3 cut(s)	127, 337, 652
TaqI	TCGA	5 cut(s)	143, 522, 565, 750, 789
TasI	AATT	8 cut(s)	16, 158, 198, 362, 537, 543, 741, 806
TauI	GCSGC	3 cut(s)	34, 176, 685
TfiI	GAWTC	3 cut(s)	419, 495, 791
Tru1I	TTAA	2 cut(s)	744, 845
Tru9I	TTAA	2 cut(s)	744, 845
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	3 cut(s)	37, 66, 577
Tsp45I	GTSAC	3 cut(s)	37, 66, 577
TspDTI	ATGAA	2 cut(s)	390, 502
TspGWI	ACGGA	2 cut(s)	54, 129
TspRI	CASTG	1 cut(s)	832
VpaK11BI	GGWCC	1 cut(s)	367
XagI	CCTNNNNNAGG	1 cut(s)	579
XapI	RAATTY	3 cut(s)	16, 158, 537
XmnI	GAANNNNTTC	2 cut(s)	537, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.