Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Reverse (-)

36915750 .. 36919007

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG353200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGACTGACCTGGCGGTGCGGTGTGCTTCTAAGGCTGAGCCGCTCAGAGTTATGCCTGCTTCGGGTAAAGGAACGCAATGCGAGCTCATTACTCAGAAATATGATTTGGTACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGTGAAAATGGGAAGCGTGCAAGGGCCTACATGGACAAAGGACAATTGGTGCCAGATGAAATAGTTGTCATGGTTGGGAAATTATATTCATGTTGGCTTATCGTCATGCTACTGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAGTATTCTCCTCCAGAGACCCCAGAGATCGCGGCAAGGCTCACCCAGCGTTTTGATGATACAGAAGAAAATGTGAAACTTCGATTGCACACTCATCATCAAAATGTGGAGGCAGTACTTTCATTATATGAAGACATAACCCTTAAGGCGGACGGGAGTGGTACCAAGGATGATGTGTTTGCCCAAATTGATGGCGCACTGGCAAAGCTTCTTGAGAAAAAGCGGGCTACCACAGAATCTTTGGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

211

Amino Acids

23.39

Weight (kDa)

5.31

Isoelectric Point (pI)

37.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	18 - 76	3.6e-22	Adenylate kinase
AAA_17	PF13207	18 - 74	4e-13	AAA domain
ADK	PF00406	89 - 173	8.9e-07	Adenylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	545
AccB1I	GGYRCC	2 cut(s)	205, 545
AccBSI	CCGCTC	2 cut(s)	43, 140
AccII	CGCG	1 cut(s)	416
AciI	CCGC	7 cut(s)	14, 19, 41, 140, 416, 533, 607
AclWI	GGATC	2 cut(s)	297, 350
AcsI	RAATTY	1 cut(s)	272
AcuI	CTGAAG	2 cut(s)	336, 404
AfaI	GTAC	3 cut(s)	111, 501, 547
AfiI	CCNNNNNNNGG	3 cut(s)	62, 365, 532
AflII	CTTAAG	1 cut(s)	527
AflIII	ACRYGT	1 cut(s)	112
AjnI	CCWGG	1 cut(s)	9
AjuI	GAANNNNNNNTTGG	2 cut(s)	89, 121
AluBI	AGCT	3 cut(s)	85, 592, 632
AluI	AGCT	3 cut(s)	85, 592, 632
Alw21I	GWGCWC	1 cut(s)	87
Alw26I	GTCTC	1 cut(s)	395
AlwI	GGATC	2 cut(s)	297, 350
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	119, 629
ApoI	RAATTY	1 cut(s)	272
Asp700I	GAANNNNTTC	1 cut(s)	321
Asp718I	GGTACC	1 cut(s)	545
AspLEI	GCGC	1 cut(s)	581
AspS9I	GGNCC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	418
BanI	GGYRCC	2 cut(s)	205, 545
BanII	GRGCYC	1 cut(s)	87
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	387, 569
BciT130I	CCWGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	395
BfrI	CTTAAG	1 cut(s)	527
BglII	AGATCT	1 cut(s)	372
BisI	GCNGC	4 cut(s)	41, 120, 417, 630
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	4 cut(s)	42, 121, 418, 631
BmcAI	AGTACT	1 cut(s)	501
Bme1390I	CCNGG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	180
BmiI	GGNNCC	2 cut(s)	207, 547
BmrFI	CCNGG	1 cut(s)	11
BmsI	GCATC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	522
BpmI	CTGGAG	2 cut(s)	144, 381
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	617
BsaI	GGTCTC	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	549
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 365, 532
Bse1I	ACTGG	3 cut(s)	273, 370, 588
Bse3DI	GCAATG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	1 cut(s)	559
BseLI	CCNNNNNNNGG	3 cut(s)	62, 365, 532
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	3 cut(s)	27, 58, 107
BseNI	ACTGG	3 cut(s)	273, 370, 588
BseRI	GAGGAG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	106
BseYI	CCCAGC	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	416
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	2 cut(s)	205, 545
BsiHKAI	GWGCWC	1 cut(s)	87
BsiSI	CCGG	1 cut(s)	287
BslI	CCNNNNNNNGG	3 cut(s)	62, 365, 532
BsmAI	GTCTC	1 cut(s)	395
BsnI	GGCC	1 cut(s)	182
Bso31I	GGTCTC	1 cut(s)	395
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	4 cut(s)	289, 355, 372, 411
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	7 cut(s)	14, 19, 41, 140, 416, 533, 607
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	3 cut(s)	28, 57, 106
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	2 cut(s)	207, 547
BspPI	GGATC	2 cut(s)	297, 350
BspT107I	GGYRCC	2 cut(s)	205, 545
BspTI	CTTAAG	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	395
BsrBI	CCGCTC	2 cut(s)	43, 140
BsrDI	GCAATG	1 cut(s)	83
BsrI	ACTGG	3 cut(s)	273, 370, 588
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	4 cut(s)	289, 355, 372, 411
BssT1I	CCWWGG	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	312
BstAFI	CTTAAG	1 cut(s)	527
BstC8I	GCNNGC	4 cut(s)	57, 83, 174, 609
BstDEI	CTNAG	6 cut(s)	30, 36, 44, 93, 134, 633
BstF5I	GGATG	1 cut(s)	559
BstFNI	CGCG	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	581
BstKTI	GATC	4 cut(s)	292, 358, 375, 414
BstMAI	GTCTC	1 cut(s)	395
BstMBI	GATC	4 cut(s)	289, 355, 372, 411
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 82, 146, 430
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	9
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	3 cut(s)	289, 355, 372
BstXI	CCANNNNNNTGG	1 cut(s)	575
BstYI	RGATCY	3 cut(s)	289, 355, 372
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	581
Cac8I	GCNNGC	4 cut(s)	57, 83, 174, 609
CfoI	GCGC	1 cut(s)	581
Cfr13I	GGNCC	1 cut(s)	180
Csp6I	GTAC	3 cut(s)	110, 500, 546
CviAII	CATG	5 cut(s)	113, 187, 226, 246, 262
CviQI	GTAC	3 cut(s)	110, 500, 546
DdeI	CTNAG	6 cut(s)	30, 36, 44, 93, 134, 633
DpnI	GATC	4 cut(s)	291, 357, 374, 413
DpnII	GATC	4 cut(s)	289, 355, 372, 411
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
EciI	GGCGGA	1 cut(s)	548
Ecl136II	GAGCTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	549
Eco24I	GRGCYC	1 cut(s)	87
Eco31I	GGTCTC	1 cut(s)	395
Eco53kI	GAGCTC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	336, 404
EcoICRI	GAGCTC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	9
EcoT14I	CCWWGG	1 cut(s)	549
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	549
FaeI	CATG	5 cut(s)	116, 190, 229, 249, 265
FalI	AAGNNNNNCTT	2 cut(s)	309, 341
FatI	CATG	5 cut(s)	112, 186, 225, 245, 261
FauI	CCCGC	1 cut(s)	600
Fnu4HI	GCNGC	4 cut(s)	41, 120, 417, 630
FokI	GGATG	1 cut(s)	566
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	4 cut(s)	41, 120, 417, 630
GlaI	GCGC	1 cut(s)	580
GluI	GCNGC	4 cut(s)	41, 120, 417, 630
GsaI	CCCAGC	1 cut(s)	433
GsuI	CTGGAG	2 cut(s)	144, 381
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	287
HhaI	GCGC	1 cut(s)	581
Hin1II	CATG	5 cut(s)	116, 190, 229, 249, 265
Hin6I	GCGC	1 cut(s)	579
HinP1I	GCGC	1 cut(s)	579
HincII	GTYRAC	1 cut(s)	331
HindII	GTYRAC	1 cut(s)	331
HindIII	AAGCTT	1 cut(s)	590
HinfI	GANTC	2 cut(s)	322, 620
HpaII	CCGG	1 cut(s)	287
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	3 cut(s)	47, 96, 384
Hpy188III	TCNNGA	4 cut(s)	305, 314, 398, 596
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	342
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	3 cut(s)	149, 176, 472
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 82, 146, 430
HpyF3I	CTNAG	6 cut(s)	30, 36, 44, 93, 134, 633
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	5 cut(s)	116, 190, 229, 249, 265
HspAI	GCGC	1 cut(s)	579
KpnI	GGTACC	1 cut(s)	549
Kzo9I	GATC	4 cut(s)	289, 355, 372, 411
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	4 cut(s)	291, 357, 374, 413
MbiI	CCGCTC	2 cut(s)	43, 140
MboI	GATC	4 cut(s)	289, 355, 372, 411
MboII	GAAGA	5 cut(s)	293, 329, 357, 461, 527
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	3 cut(s)	289, 355, 372
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	5 cut(s)	144, 200, 236, 272, 570
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	2 cut(s)	405, 487
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	1 cut(s)	528
MslI	CAYNNNNRTG	1 cut(s)	486
MspCI	CTTAAG	1 cut(s)	527
MspI	CCGG	1 cut(s)	287
MspR9I	CCNGG	1 cut(s)	11
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	4 cut(s)	32, 82, 146, 430
NdeII	GATC	4 cut(s)	289, 355, 372, 411
NlaIII	CATG	5 cut(s)	116, 190, 229, 249, 265
NlaIV	GGNNCC	2 cut(s)	207, 547
NspI	RCATGY	1 cut(s)	116
PciI	ACATGT	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	2 cut(s)	322, 620
PkrI	GCNGC	4 cut(s)	42, 121, 418, 631
PscI	ACATGT	1 cut(s)	112
Psp124BI	GAGCTC	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	207, 547
PspPI	GGNCC	1 cut(s)	180
PsuI	RGATCY	3 cut(s)	289, 355, 372
RsaI	GTAC	3 cut(s)	111, 501, 547
RsaNI	GTAC	3 cut(s)	110, 500, 546
RseI	CAYNNNNRTG	1 cut(s)	486
SacI	GAGCTC	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	4 cut(s)	41, 120, 417, 630
Sau3AI	GATC	4 cut(s)	289, 355, 372, 411
Sau96I	GGNCC	1 cut(s)	180
ScaI	AGTACT	1 cut(s)	501
ScrFI	CCNGG	1 cut(s)	11
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	6 cut(s)	12, 87, 312, 353, 594, 634
SfaNI	GCATC	1 cut(s)	158
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	527, 596
SmoI	CTYRAG	2 cut(s)	527, 596
Sse9I	AATT	5 cut(s)	144, 200, 236, 272, 570
SsiI	CCGC	7 cut(s)	14, 19, 41, 140, 416, 533, 607
SstI	GAGCTC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	9
StyI	CCWWGG	1 cut(s)	549
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	282, 466
TasI	AATT	5 cut(s)	144, 200, 236, 272, 570
TatI	WGTACW	1 cut(s)	499
TauI	GCSGC	2 cut(s)	43, 419
TfiI	GAWTC	2 cut(s)	322, 620
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	588
TseI	GCWGC	2 cut(s)	119, 629
TspDTI	ATGAA	5 cut(s)	228, 234, 286, 495, 528
TspRI	CASTG	1 cut(s)	588
Vha464I	CTTAAG	1 cut(s)	527
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.