Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

50765851 .. 50769653

Gene Structure 3803 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG387100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGATATCCGGTGCGCCTGCTTCGGGGAAAGGCACGCAATGCGAGCTCATTACTCAGAAATATGATTTGGTACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGTGTGAAAATGGGAAGCGTGCAAGGGCGTACATGGACAAAGGACAATTGGTTCCAGATGAAATAGTTGTTATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTAGGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGAAGAGACTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAATATTCTCCTCCAGAGACCCCAGAGATCGCGGCAAGGCTCACCCAACGTTTTGATGATACAGAAGAAAAGGTGAAACTTCGACTGCACACTCATCATCAAAACGTGGAGGCAGTACTTTCATTATATGAAGACATAACCTGTAAGGTGGACGGGAGTGTTACCAAGGATGATGTGTTTGCCCAAATTGATGGCGCGCTGACAAAGCTTCTTGAGAAAAAGCGGGCTACCACAGAATCTCTGGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

216

Amino Acids

24.02

Weight (kDa)

5.47

Isoelectric Point (pI)

37.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	2 - 178	1.1e-48	Adenylate kinase
AAA_17	PF13207	4 - 122	9.8e-27	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	101
AccII	CGCG	2 cut(s)	431, 596
AciI	CCGC	3 cut(s)	101, 431, 622
AclI	AACGTT	1 cut(s)	448
AclWI	GGATC	2 cut(s)	312, 365
AcsI	RAATTY	1 cut(s)	287
AcuI	CTGAAG	1 cut(s)	351
AfaI	GTAC	3 cut(s)	72, 146, 516
AfiI	CCNNNNNNNGG	2 cut(s)	23, 380
AflII	CTTAAG	1 cut(s)	281
AflIII	ACRYGT	1 cut(s)	73
AjuI	GAANNNNNNNTTGG	2 cut(s)	50, 82
AloI	GAACNNNNNNTCC	2 cut(s)	150, 182
AluBI	AGCT	4 cut(s)	46, 261, 607, 647
AluI	AGCT	4 cut(s)	46, 261, 607, 647
Alw21I	GWGCWC	2 cut(s)	48, 263
Alw26I	GTCTC	2 cut(s)	329, 410
AlwI	GGATC	2 cut(s)	312, 365
Ama87I	CYCGRG	1 cut(s)	222
ApeKI	GCWGC	2 cut(s)	80, 644
ApoI	RAATTY	1 cut(s)	287
AspA2I	CCTAGG	1 cut(s)	254
AspLEI	GCGC	3 cut(s)	16, 596, 598
AsuHPI	GGTGA	3 cut(s)	205, 433, 484
AvaI	CYCGRG	1 cut(s)	222
AvrII	CCTAGG	1 cut(s)	254
BanII	GRGCYC	2 cut(s)	48, 263
BbsI	GAAGAC	1 cut(s)	537
Bbv12I	GWGCWC	2 cut(s)	48, 263
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	4 cut(s)	184, 239, 402, 584
BciVI	GTATCC	1 cut(s)	242
BcoDI	GTCTC	2 cut(s)	329, 410
BfaI	CTAG	1 cut(s)	255
BfrI	CTTAAG	1 cut(s)	281
BfuI	GTATCC	1 cut(s)	242
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	3 cut(s)	81, 432, 645
BlnI	CCTAGG	1 cut(s)	254
BlsI	GCNGC	3 cut(s)	82, 433, 646
BmcAI	AGTACT	1 cut(s)	516
BmeT110I	CYCGRG	1 cut(s)	222
BmiI	GGNNCC	1 cut(s)	168
BmsI	GCATC	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	537
BpmI	CTGGAG	2 cut(s)	105, 396
BpuEI	CTTGAG	1 cut(s)	632
BsaI	GGTCTC	1 cut(s)	410
BsaJI	CCNNGG	2 cut(s)	254, 564
BsaWI	WCCGGW	1 cut(s)	8
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 380
Bse1I	ACTGG	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	44
BseDI	CCNNGG	2 cut(s)	254, 564
BseGI	GGATG	2 cut(s)	250, 574
BseLI	CCNNNNNNNGG	2 cut(s)	23, 380
BseMI	GCAATG	1 cut(s)	44
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	385
BsePI	GCGCGC	1 cut(s)	594
BseRI	GAGGAG	1 cut(s)	399
BseXI	GCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	470
Bsh1236I	CGCG	2 cut(s)	431, 596
BsiHKAI	GWGCWC	2 cut(s)	48, 263
BsiHKCI	CYCGRG	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	9, 302
BslI	CCNNNNNNNGG	2 cut(s)	23, 380
BsmAI	GTCTC	2 cut(s)	329, 410
Bso31I	GGTCTC	1 cut(s)	410
BsoBI	CYCGRG	1 cut(s)	222
Bsp1286I	GDGCHC	2 cut(s)	48, 263
Bsp143I	GATC	4 cut(s)	304, 370, 387, 426
BspACI	CCGC	3 cut(s)	101, 431, 622
BspCNI	CTCAG	1 cut(s)	67
BspFNI	CGCG	2 cut(s)	431, 596
BspLI	GGNNCC	1 cut(s)	168
BspPI	GGATC	2 cut(s)	312, 365
BspTI	CTTAAG	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	410
BsrBI	CCGCTC	1 cut(s)	101
BsrDI	GCAATG	1 cut(s)	44
BsrI	ACTGG	1 cut(s)	385
BssECI	CCNNGG	2 cut(s)	254, 564
BssHII	GCGCGC	1 cut(s)	594
BssMI	GATC	4 cut(s)	304, 370, 387, 426
BssT1I	CCWWGG	2 cut(s)	254, 564
Bst6I	CTCTTC	1 cut(s)	327
BstAFI	CTTAAG	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	39
BstC8I	GCNNGC	8 cut(s)	18, 35, 44, 135, 236, 270, 596, 624
BstDEI	CTNAG	3 cut(s)	54, 95, 648
BstF5I	GGATG	2 cut(s)	250, 574
BstFNI	CGCG	2 cut(s)	431, 596
BstHHI	GCGC	3 cut(s)	16, 596, 598
BstKTI	GATC	4 cut(s)	307, 373, 390, 429
BstMAI	GTCTC	2 cut(s)	329, 410
BstMBI	GATC	4 cut(s)	304, 370, 387, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 43, 107, 604
BstNSI	RCATGY	1 cut(s)	77
BstUI	CGCG	2 cut(s)	431, 596
BstV1I	GCAGC	1 cut(s)	67
BstV2I	GAAGAC	1 cut(s)	537
BstX2I	RGATCY	3 cut(s)	304, 370, 387
BstXI	CCANNNNNNTGG	1 cut(s)	590
BstYI	RGATCY	3 cut(s)	304, 370, 387
BsuI	GTATCC	1 cut(s)	242
BtgZI	GCGATG	1 cut(s)	249
BtsCI	GGATG	2 cut(s)	250, 574
Cac8I	GCNNGC	8 cut(s)	18, 35, 44, 135, 236, 270, 596, 624
CfoI	GCGC	3 cut(s)	16, 596, 598
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	3 cut(s)	71, 145, 515
CviAII	CATG	2 cut(s)	74, 148
CviQI	GTAC	3 cut(s)	71, 145, 515
DdeI	CTNAG	3 cut(s)	54, 95, 648
DpnI	GATC	4 cut(s)	306, 372, 389, 428
DpnII	GATC	4 cut(s)	304, 370, 387, 426
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
Ecl136II	GAGCTC	2 cut(s)	46, 261
Eco130I	CCWWGG	2 cut(s)	254, 564
Eco24I	GRGCYC	2 cut(s)	48, 263
Eco31I	GGTCTC	1 cut(s)	410
Eco32I	GATATC	1 cut(s)	6
Eco53kI	GAGCTC	2 cut(s)	46, 261
Eco57I	CTGAAG	1 cut(s)	351
Eco88I	CYCGRG	1 cut(s)	222
EcoICRI	GAGCTC	2 cut(s)	46, 261
EcoRI	GAATTC	1 cut(s)	287
EcoRV	GATATC	1 cut(s)	6
EcoT14I	CCWWGG	2 cut(s)	254, 564
EcoT38I	GRGCYC	2 cut(s)	48, 263
ErhI	CCWWGG	2 cut(s)	254, 564
FaeI	CATG	2 cut(s)	77, 151
FaiI	YATR	7 cut(s)	63, 75, 149, 188, 526, 528, 536
FalI	AAGNNNNNCTT	2 cut(s)	324, 356
FatI	CATG	2 cut(s)	73, 147
FauI	CCCGC	1 cut(s)	615
Fnu4HI	GCNGC	3 cut(s)	81, 432, 645
FokI	GGATG	2 cut(s)	257, 581
FriOI	GRGCYC	2 cut(s)	48, 263
Fsp4HI	GCNGC	3 cut(s)	81, 432, 645
FspBI	CTAG	1 cut(s)	255
GlaI	GCGC	3 cut(s)	15, 595, 597
GluI	GCNGC	3 cut(s)	81, 432, 645
GsuI	CTGGAG	2 cut(s)	105, 396
HapII	CCGG	2 cut(s)	9, 302
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	3 cut(s)	16, 596, 598
Hin1II	CATG	2 cut(s)	77, 151
Hin6I	GCGC	3 cut(s)	14, 594, 596
HinP1I	GCGC	3 cut(s)	14, 594, 596
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	3 cut(s)	218, 337, 635
HpaII	CCGG	2 cut(s)	9, 302
HphI	GGTGA	3 cut(s)	205, 433, 484
Hpy166II	GTNNAC	2 cut(s)	346, 550
Hpy188I	TCNGA	2 cut(s)	57, 399
Hpy188III	TCNNGA	7 cut(s)	170, 222, 224, 320, 329, 413, 611
Hpy8I	GTNNAC	2 cut(s)	346, 550
HpyAV	CCTTC	1 cut(s)	357
HpyCH4IV	ACGT	3 cut(s)	324, 448, 504
HpyCH4V	TGCA	3 cut(s)	110, 137, 487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 43, 107, 604
HpyF3I	CTNAG	3 cut(s)	54, 95, 648
HpySE526I	ACGT	3 cut(s)	324, 448, 504
Hsp92II	CATG	2 cut(s)	77, 151
HspAI	GCGC	3 cut(s)	14, 594, 596
Kzo9I	GATC	4 cut(s)	304, 370, 387, 426
LmnI	GCTCC	1 cut(s)	258
Lsp1109I	GCAGC	1 cut(s)	67
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	255
MaeII	ACGT	3 cut(s)	324, 448, 504
MaeIII	GTNAC	2 cut(s)	376, 559
MalI	GATC	4 cut(s)	306, 372, 389, 428
MbiI	CCGCTC	1 cut(s)	101
MboI	GATC	4 cut(s)	304, 370, 387, 426
MboII	GAAGA	5 cut(s)	308, 344, 372, 476, 542
MfeI	CAATTG	2 cut(s)	161, 273
MflI	RGATCY	3 cut(s)	304, 370, 387
MhlI	GDGCHC	2 cut(s)	48, 263
MluCI	AATT	5 cut(s)	105, 161, 273, 287, 585
MlyI	GAGTC	1 cut(s)	331
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	2 cut(s)	420, 502
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	115
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	2 cut(s)	9, 302
MunI	CAATTG	2 cut(s)	161, 273
MvnI	CGCG	2 cut(s)	431, 596
MwoI	GCNNNNNNNGC	4 cut(s)	39, 43, 107, 604
NdeII	GATC	4 cut(s)	304, 370, 387, 426
NlaIII	CATG	2 cut(s)	77, 151
NlaIV	GGNNCC	1 cut(s)	168
NspI	RCATGY	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	222
PauI	GCGCGC	1 cut(s)	594
PciI	ACATGT	1 cut(s)	73
PfeI	GAWTC	2 cut(s)	218, 635
PkrI	GCNGC	3 cut(s)	82, 433, 646
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PscI	ACATGT	1 cut(s)	73
Psp124BI	GAGCTC	2 cut(s)	48, 263
Psp1406I	AACGTT	1 cut(s)	448
PspN4I	GGNNCC	1 cut(s)	168
PsuI	RGATCY	3 cut(s)	304, 370, 387
PteI	GCGCGC	1 cut(s)	594
RsaI	GTAC	3 cut(s)	72, 146, 516
RsaNI	GTAC	3 cut(s)	71, 145, 515
RseI	CAYNNNNRTG	1 cut(s)	115
SacI	GAGCTC	2 cut(s)	48, 263
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	3 cut(s)	81, 432, 645
Sau3AI	GATC	4 cut(s)	304, 370, 387, 426
ScaI	AGTACT	1 cut(s)	516
SchI	GAGTC	1 cut(s)	331
SduI	GDGCHC	2 cut(s)	48, 263
SfaNI	GCATC	1 cut(s)	119
Sfr274I	CTCGAG	1 cut(s)	222
SlaI	CTCGAG	1 cut(s)	222
SmiMI	CAYNNNNRTG	1 cut(s)	115
SmlI	CTYRAG	3 cut(s)	222, 281, 611
SmoI	CTYRAG	3 cut(s)	222, 281, 611
Sse9I	AATT	5 cut(s)	105, 161, 273, 287, 585
SsiI	CCGC	3 cut(s)	101, 431, 622
SspI	AATATT	1 cut(s)	404
SspMI	CTAG	1 cut(s)	255
SstI	GAGCTC	2 cut(s)	48, 263
StyI	CCWWGG	2 cut(s)	254, 564
TaiI	ACGT	3 cut(s)	327, 451, 507
TaqI	TCGA	3 cut(s)	223, 297, 481
TasI	AATT	5 cut(s)	105, 161, 273, 287, 585
TatI	WGTACW	1 cut(s)	514
TauI	GCSGC	1 cut(s)	434
TfiI	GAWTC	2 cut(s)	218, 635
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	2 cut(s)	80, 644
TspDTI	ATGAA	4 cut(s)	189, 301, 510, 543
Vha464I	CTTAAG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	287
XceI	RCATGY	1 cut(s)	77
XcmI	CCANNNNNNNNNTGG	1 cut(s)	637
XhoI	CTCGAG	1 cut(s)	222
XmaJI	CCTAGG	1 cut(s)	254
XspI	CTAG	1 cut(s)	255
ZrmI	AGTACT	1 cut(s)	516

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.