Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Reverse (-)

47615137 .. 47618411

Gene Structure 3275 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG357100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGACTGACCTGGCGGTGCGGTGTGCTTCTAAGGCTGAGCCGCTCAGAGTTATGATATCCGGGGCGCCTGCTTCGGGTAAAGGAACGCAATGCGAGCTCATTACTCAGAAATATGATTTGGTACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGTGAAAATGGGAAGTGTGCAAGGGCCTACATGGACAAAGGACAATTGGTGCCACATGAAATAGTTGTCATGGTAGGGAAATTATATTCATATGGTGAAAGAGCGTCTATTACAGCCAGATTCTTGAGAAAAAGGCTGGCTCTTGGATGGATACCCCCTAGGAGCTCATCGCAACCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAGTATTCTCCTCCAGAGACCCCAGAGATCGCGGCAAGGCTCACCCAGTGTTTTGATGATACAGAAGAAAAGGTGAAACTTCGATTGCACACTCATCATCAAAATGTGGAGGCAGTACTTTCATTATATGAAGACATAACCCTTAAGGTGGACGGGAGTGTTACCAAGGAGGATGTGTTTGCCCAAATTGACGGTGCACTGGCAAAGCTTCTTGAGAAAAAGCGGGCTACCACAGAATCTTTGGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

240

Amino Acids

26.48

Weight (kDa)

6.61

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	19 - 202	2.1e-33	Adenylate kinase
AAA_17	PF13207	21 - 77	8e-13	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	64, 217
AccBSI	CCGCTC	2 cut(s)	43, 152
AccII	CGCG	1 cut(s)	503
AciI	CCGC	6 cut(s)	14, 19, 41, 152, 503, 694
AclWI	GGATC	2 cut(s)	384, 437
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	2 cut(s)	423, 491
AcyI	GRCGYC	1 cut(s)	65
AdeI	CACNNNGTG	1 cut(s)	519
AfaI	GTAC	2 cut(s)	123, 588
AfiI	CCNNNNNNNGG	3 cut(s)	74, 452, 619
AflII	CTTAAG	2 cut(s)	353, 614
AflIII	ACRYGT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	9
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	4 cut(s)	97, 333, 679, 719
AluI	AGCT	4 cut(s)	97, 333, 679, 719
Alw21I	GWGCWC	3 cut(s)	99, 335, 670
Alw26I	GTCTC	1 cut(s)	482
Alw44I	GTGCAC	1 cut(s)	666
AlwI	GGATC	2 cut(s)	384, 437
AoxI	GGCC	1 cut(s)	192
ApaLI	GTGCAC	1 cut(s)	666
ApeKI	GCWGC	2 cut(s)	131, 716
ApoI	RAATTY	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	408
AspA2I	CCTAGG	1 cut(s)	326
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	275, 505, 556
AvrII	CCTAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	670
BanI	GGYRCC	2 cut(s)	64, 217
BanII	GRGCYC	2 cut(s)	99, 335
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	3 cut(s)	99, 335, 670
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	309, 474
BciT130I	CCWGG	1 cut(s)	11
BciVI	GTATCC	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	68
BfrI	CTTAAG	2 cut(s)	353, 614
BfuI	GTATCC	1 cut(s)	312
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	4 cut(s)	41, 132, 504, 717
BlnI	CCTAGG	1 cut(s)	326
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	4 cut(s)	42, 133, 505, 718
BmcAI	AGTACT	1 cut(s)	588
Bme1390I	CCNGG	2 cut(s)	11, 61
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	66, 219
BmrFI	CCNGG	2 cut(s)	11, 61
BmrI	ACTGGG	1 cut(s)	511
BmsI	GCATC	1 cut(s)	170
BmuI	ACTGGG	1 cut(s)	511
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	2 cut(s)	156, 468
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	2 cut(s)	313, 704
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	3 cut(s)	60, 326, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	632, 662
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 452, 619
Bse1I	ACTGG	3 cut(s)	457, 517, 675
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	3 cut(s)	60, 326, 636
BseGI	GGATG	2 cut(s)	320, 649
BseLI	CCNNNNNNNGG	3 cut(s)	74, 452, 619
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	27, 58, 119
BseNI	ACTGG	3 cut(s)	457, 517, 675
BseRI	GAGGAG	1 cut(s)	471
BseSI	GKGCMC	1 cut(s)	670
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	503
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	2 cut(s)	64, 217
BsiHKAI	GWGCWC	3 cut(s)	99, 335, 670
BsiSI	CCGG	2 cut(s)	60, 374
BslI	CCNNNNNNNGG	3 cut(s)	74, 452, 619
BsmAI	GTCTC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	482
Bsp1286I	GDGCHC	3 cut(s)	99, 335, 670
Bsp143I	GATC	4 cut(s)	376, 442, 459, 498
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	6 cut(s)	14, 19, 41, 152, 503, 694
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	3 cut(s)	28, 57, 118
BspFNI	CGCG	1 cut(s)	503
BspLI	GGNNCC	2 cut(s)	66, 219
BspPI	GGATC	2 cut(s)	384, 437
BspT107I	GGYRCC	2 cut(s)	64, 217
BspTI	CTTAAG	2 cut(s)	353, 614
BspTNI	GGTCTC	1 cut(s)	482
BsrBI	CCGCTC	2 cut(s)	43, 152
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	3 cut(s)	457, 517, 675
BssECI	CCNNGG	3 cut(s)	60, 326, 636
BssMI	GATC	4 cut(s)	376, 442, 459, 498
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	326, 636
Bst2UI	CCWGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	665
Bst6I	CTCTTC	1 cut(s)	399
BstACI	GRCGYC	1 cut(s)	65
BstAFI	CTTAAG	2 cut(s)	353, 614
BstC8I	GCNNGC	4 cut(s)	69, 95, 306, 696
BstDEI	CTNAG	6 cut(s)	30, 36, 44, 105, 146, 720
BstF5I	GGATG	2 cut(s)	320, 649
BstFNI	CGCG	1 cut(s)	503
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	4 cut(s)	379, 445, 462, 501
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	4 cut(s)	376, 442, 459, 498
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 94, 158
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	9, 59
BstSLI	GKGCMC	1 cut(s)	670
BstUI	CGCG	1 cut(s)	503
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	3 cut(s)	376, 442, 459
BstYI	RGATCY	3 cut(s)	376, 442, 459
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	194
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	320, 649
BtsIMutI	CAGTG	2 cut(s)	524, 668
Cac8I	GCNNGC	4 cut(s)	69, 95, 306, 696
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	122, 587
CviAII	CATG	4 cut(s)	125, 199, 224, 238
CviQI	GTAC	2 cut(s)	122, 587
DdeI	CTNAG	6 cut(s)	30, 36, 44, 105, 146, 720
DinI	GGCGCC	1 cut(s)	66
DpnI	GATC	4 cut(s)	378, 444, 461, 500
DpnII	GATC	4 cut(s)	376, 442, 459, 498
DraIII	CACNNNGTG	1 cut(s)	519
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Ecl136II	GAGCTC	2 cut(s)	97, 333
Eco130I	CCWWGG	2 cut(s)	326, 636
Eco24I	GRGCYC	2 cut(s)	99, 335
Eco31I	GGTCTC	1 cut(s)	482
Eco32I	GATATC	1 cut(s)	57
Eco53kI	GAGCTC	2 cut(s)	97, 333
Eco57I	CTGAAG	2 cut(s)	423, 491
EcoICRI	GAGCTC	2 cut(s)	97, 333
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	326, 636
EcoT38I	GRGCYC	2 cut(s)	99, 335
EgeI	GGCGCC	1 cut(s)	66
EheI	GGCGCC	1 cut(s)	66
ErhI	CCWWGG	2 cut(s)	326, 636
FaeI	CATG	4 cut(s)	128, 202, 227, 241
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	4 cut(s)	124, 198, 223, 237
FauI	CCCGC	1 cut(s)	687
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	41, 132, 504, 717
FokI	GGATG	2 cut(s)	327, 656
FriOI	GRGCYC	2 cut(s)	99, 335
Fsp4HI	GCNGC	4 cut(s)	41, 132, 504, 717
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	4 cut(s)	41, 132, 504, 717
GsuI	CTGGAG	2 cut(s)	156, 468
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	60, 374
HgaI	GACGC	1 cut(s)	261
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	4 cut(s)	128, 202, 227, 241
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	677
HinfI	GANTC	3 cut(s)	288, 409, 707
HpaII	CCGG	2 cut(s)	60, 374
HphI	GGTGA	3 cut(s)	275, 505, 556
Hpy166II	GTNNAC	3 cut(s)	418, 622, 668
Hpy188I	TCNGA	3 cut(s)	47, 108, 471
Hpy188III	TCNNGA	5 cut(s)	292, 392, 401, 485, 683
Hpy8I	GTNNAC	3 cut(s)	418, 622, 668
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	161, 188, 559, 668
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 94, 158
HpyF3I	CTNAG	6 cut(s)	30, 36, 44, 105, 146, 720
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	4 cut(s)	128, 202, 227, 241
HspAI	GCGC	1 cut(s)	65
KasI	GGCGCC	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	376, 442, 459, 498
LmnI	GCTCC	1 cut(s)	330
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	448, 631
MalI	GATC	4 cut(s)	378, 444, 461, 500
MbiI	CCGCTC	2 cut(s)	43, 152
MboI	GATC	4 cut(s)	376, 442, 459, 498
MboII	GAAGA	5 cut(s)	380, 416, 444, 548, 614
MfeI	CAATTG	2 cut(s)	212, 345
MflI	RGATCY	3 cut(s)	376, 442, 459
MhlI	GDGCHC	3 cut(s)	99, 335, 670
MluCI	AATT	6 cut(s)	156, 212, 248, 345, 359, 657
Mly113I	GGCGCC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	3 cut(s)	492, 574, 634
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	2 cut(s)	354, 615
MslI	CAYNNNNRTG	1 cut(s)	573
MspCI	CTTAAG	2 cut(s)	353, 614
MspI	CCGG	2 cut(s)	60, 374
MspR9I	CCNGG	2 cut(s)	11, 61
MunI	CAATTG	2 cut(s)	212, 345
MvaI	CCWGG	1 cut(s)	11
MvnI	CGCG	1 cut(s)	503
MwoI	GCNNNNNNNGC	3 cut(s)	32, 94, 158
NarI	GGCGCC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	4 cut(s)	376, 442, 459, 498
NlaIII	CATG	4 cut(s)	128, 202, 227, 241
NlaIV	GGNNCC	2 cut(s)	66, 219
NspI	RCATGY	1 cut(s)	128
PciI	ACATGT	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	3 cut(s)	288, 409, 707
PkrI	GCNGC	4 cut(s)	42, 133, 505, 718
PluTI	GGCGCC	1 cut(s)	68
PscI	ACATGT	1 cut(s)	124
Psp124BI	GAGCTC	2 cut(s)	99, 335
Psp6I	CCWGG	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	66, 219
PspPI	GGNCC	1 cut(s)	192
PsuI	RGATCY	3 cut(s)	376, 442, 459
RsaI	GTAC	2 cut(s)	123, 588
RsaNI	GTAC	2 cut(s)	122, 587
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	2 cut(s)	99, 335
SaqAI	TTAA	2 cut(s)	354, 615
SatI	GCNGC	4 cut(s)	41, 132, 504, 717
Sau3AI	GATC	4 cut(s)	376, 442, 459, 498
Sau96I	GGNCC	1 cut(s)	192
ScaI	AGTACT	1 cut(s)	588
ScrFI	CCNGG	2 cut(s)	11, 61
SduI	GDGCHC	3 cut(s)	99, 335, 670
SetI	ASST	9 cut(s)	12, 99, 335, 399, 440, 546, 621, 681, 721
SfaNI	GCATC	1 cut(s)	170
SfoI	GGCGCC	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	4 cut(s)	292, 353, 614, 683
SmoI	CTYRAG	4 cut(s)	292, 353, 614, 683
Sse9I	AATT	6 cut(s)	156, 212, 248, 345, 359, 657
SsiI	CCGC	6 cut(s)	14, 19, 41, 152, 503, 694
SspDI	GGCGCC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	327
SstI	GAGCTC	2 cut(s)	99, 335
StyD4I	CCNGG	2 cut(s)	9, 59
StyI	CCWWGG	2 cut(s)	326, 636
TaaI	ACNGT	1 cut(s)	665
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	2 cut(s)	369, 553
TasI	AATT	6 cut(s)	156, 212, 248, 345, 359, 657
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	2 cut(s)	43, 506
TfiI	GAWTC	3 cut(s)	288, 409, 707
Tru1I	TTAA	2 cut(s)	354, 615
Tru9I	TTAA	2 cut(s)	354, 615
TscAI	CASTG	2 cut(s)	524, 675
TseI	GCWGC	2 cut(s)	131, 716
TspDTI	ATGAA	5 cut(s)	240, 246, 373, 582, 615
TspRI	CASTG	2 cut(s)	524, 675
Vha464I	CTTAAG	2 cut(s)	353, 614
VneI	GTGCAC	1 cut(s)	666
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XmaJI	CCTAGG	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	1 cut(s)	327
ZrmI	AGTACT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.