Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

76827682 .. 76828428

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036166

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTACGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCATTTGCCTATTAATTAATGACGCCGTAATCAGGCCACTACATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAACTGAAATTCCATTGTGGATAAAATGCCCCGATTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

106

Amino Acids

12.03

Weight (kDa)

4.58

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	1 - 63	1.7e-10	Adenylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	123, 176
AcsI	RAATTY	2 cut(s)	98, 282
AcuI	CTGAAG	1 cut(s)	162
AcyI	GRCGYC	1 cut(s)	222
AfiI	CCNNNNNNNGG	2 cut(s)	191, 231
AflII	CTTAAG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw21I	GWGCWC	1 cut(s)	74
AlwI	GGATC	2 cut(s)	123, 176
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	1 cut(s)	233
ApoI	RAATTY	2 cut(s)	98, 282
AseI	ATTAAT	2 cut(s)	212, 216
Asp700I	GAANNNNTTC	2 cut(s)	147, 270
AsuHPI	GGTGA	1 cut(s)	16
AvaI	CYCGRG	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BccI	CCATC	1 cut(s)	50
BceAI	ACGGC	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	53
BmeT110I	CYCGRG	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	269
BsaHI	GRCGYC	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 231
Bse1I	ACTGG	2 cut(s)	196, 252
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	191, 231
BseNI	ACTGG	2 cut(s)	196, 252
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	191, 231
BsnI	GGCC	1 cut(s)	235
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	115, 181, 198
BspANI	GGCC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	123, 176
BspTI	CTTAAG	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	196, 252
BssMI	GATC	3 cut(s)	115, 181, 198
BssNI	GRCGYC	1 cut(s)	222
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	222
BstAFI	CTTAAG	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	47, 81
BstF5I	GGATG	1 cut(s)	61
BstKTI	GATC	3 cut(s)	118, 184, 201
BstMBI	GATC	3 cut(s)	115, 181, 198
BstX2I	RGATCY	2 cut(s)	115, 181
BstYI	RGATCY	2 cut(s)	115, 181
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	235
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	47, 81
CseI	GACGC	2 cut(s)	2, 230
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	7 cut(s)	25, 45, 49, 72, 105, 112, 235
CviKI_1	RGCY	7 cut(s)	25, 45, 49, 72, 105, 112, 235
DpnI	GATC	3 cut(s)	117, 183, 200
DpnII	GATC	3 cut(s)	115, 181, 198
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	74
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	1 cut(s)	245
FaiI	YATR	1 cut(s)	243
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	1 cut(s)	241
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	269
HaeIII	GGCC	1 cut(s)	235
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	2 cut(s)	2, 230
Hin1I	GRCGYC	1 cut(s)	222
Hin1II	CATG	1 cut(s)	245
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	29, 148
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	16
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188III	TCNNGA	4 cut(s)	33, 35, 131, 140
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	135
HpySE526I	ACGT	1 cut(s)	135
Hsp92I	GRCGYC	1 cut(s)	222
Hsp92II	CATG	1 cut(s)	245
Kzo9I	GATC	3 cut(s)	115, 181, 198
LpnPI	CCDG	8 cut(s)	31, 39, 126, 153, 177, 198, 217, 233
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	2 cut(s)	187, 257
MalI	GATC	3 cut(s)	117, 183, 200
MboI	GATC	3 cut(s)	115, 181, 198
MboII	GAAGA	4 cut(s)	119, 155, 183, 278
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	2 cut(s)	115, 181
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	4 cut(s)	84, 98, 213, 282
MmeI	TCCRAC	1 cut(s)	148
MroXI	GAANNNNTTC	2 cut(s)	147, 270
MseI	TTAA	3 cut(s)	93, 212, 216
MspCI	CTTAAG	1 cut(s)	92
MspI	CCGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	84
NdeII	GATC	3 cut(s)	115, 181, 198
NlaIII	CATG	1 cut(s)	245
PacI	TTAATTAA	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	33
PdmI	GAANNNNTTC	2 cut(s)	147, 270
PfeI	GAWTC	2 cut(s)	29, 148
PshBI	ATTAAT	2 cut(s)	212, 216
Psp124BI	GAGCTC	1 cut(s)	74
PsuI	RGATCY	2 cut(s)	115, 181
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	3 cut(s)	93, 212, 216
Sau3AI	GATC	3 cut(s)	115, 181, 198
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	3 cut(s)	74, 138, 179
Sfr274I	CTCGAG	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	33, 92
SmoI	CTYRAG	2 cut(s)	33, 92
Sse9I	AATT	4 cut(s)	84, 98, 213, 282
SstI	GAGCTC	1 cut(s)	74
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	2 cut(s)	34, 108
TasI	AATT	4 cut(s)	84, 98, 213, 282
TfiI	GAWTC	2 cut(s)	29, 148
Tru1I	TTAA	3 cut(s)	93, 212, 216
Tru9I	TTAA	3 cut(s)	93, 212, 216
TspDTI	ATGAA	2 cut(s)	112, 258
Vha464I	CTTAAG	1 cut(s)	92
VspI	ATTAAT	2 cut(s)	212, 216
XapI	RAATTY	2 cut(s)	98, 282
XhoI	CTCGAG	1 cut(s)	33
XmnI	GAANNNNTTC	2 cut(s)	147, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.