Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Reverse (-)

45441433 .. 45446798

Gene Structure 5366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G556600.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCTTGCAATGTAAACGTAGTCCACCAAGCAGCAATGGCGTCAGCCATAGGCCAGCCTAACAAGCCTTCTCAGCGGCCGAACGCATCTCTGTCCGCGCCATCCAATTCAAAGCCCAAATCTTGTTGTAAGCTTCTTTTGTCCTCACAGTCTTCTTTCATTTCCGGTTTCTCTCCCTCTCGTCCTCAAACCCTAACTCCGTTTCGTTCCAGCAGAGCTCAGAATTTCCCGGTTGTGGGGTCTGCCAAGGCAGAGCCGCTGAGAATAATGATATCGGGGGCGCCAGCTTCTGGTAAAGGAACGCAATGCCAGCTCATTACCCAGAAGTATGGTTTAGTGCATGTTGCTGCTGGAGATTTACTTAGAGCAGAGATTGCATCTGGGAGTGAAAATGGAAGGCGTGCAAGAGAGTACATGGAACAAGGACAATTGGTTCCAGATGAAATAGTTGTCATGATGGTGAAGGAGCGTCTATTGCAGCCAGATTCTAAAGAAAATGGTTGGCTTTTGGATGGATACCCTAGGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTAGGGTTTAAGCCGGATCTTTTCATTCTTCTAGAAGTCCCTGAAGAGATTCTTGTTGAGAGAGTTGTTGGAAGAAGGTTAGATCCTATTACTGGGAAGATATACCATTTAAAGTATTCTCCGCCAGAGACCCAAGAGATTGCGTCAAGGCTCACCCAACGTTTTGATGATACAGAAGAAAAGGTGAAATTGCGATTGAACACTCATCATCAGAATGTGGAGGCCGTACTTTCAATGTTAATGGAAGTGTTAACAAGGAGGATGTGTTTACCCAAATTGACAGTGCGCTCACCCGACTACTTGATAAAAGACAGGCTACTTCAGAATCTCTGCCAGCATAGGTGTAGAGAATGGTTTAGGCTCCCATTTTTACAAGTGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

313

Amino Acids

34.95

Weight (kDa)

9.43

Isoelectric Point (pI)

55.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	290
AccII	CGCG	1 cut(s)	98
AciI	CCGC	4 cut(s)	76, 96, 257, 677
AclI	AACGTT	1 cut(s)	715
AclWI	GGATC	2 cut(s)	579, 632
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	223
AcuI	CTGAAG	2 cut(s)	618, 860
AcyI	GRCGYC	2 cut(s)	41, 281
AfaI	GTAC	2 cut(s)	413, 783
AfiI	CCNNNNNNNGG	4 cut(s)	235, 236, 290, 647
AflII	CTTAAG	1 cut(s)	548
AgsI	TTSAA	3 cut(s)	111, 754, 789
AloI	GAACNNNNNNTCC	2 cut(s)	417, 449
AluBI	AGCT	5 cut(s)	133, 218, 287, 313, 528
AluI	AGCT	5 cut(s)	133, 218, 287, 313, 528
Alw21I	GWGCWC	2 cut(s)	220, 530
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	2 cut(s)	579, 632
AlwNI	CAGNNNCTG	1 cut(s)	290
AoxI	GGCC	3 cut(s)	52, 77, 777
ApeKI	GCWGC	3 cut(s)	32, 347, 478
ApoI	RAATTY	1 cut(s)	223
Asp700I	GAANNNNTTC	1 cut(s)	603
AspA2I	CCTAGG	1 cut(s)	521
AspLEI	GCGC	3 cut(s)	100, 283, 843
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	4 cut(s)	472, 700, 751, 837
AvrII	CCTAGG	1 cut(s)	521
BanI	GGYRCC	1 cut(s)	280
BanII	GRGCYC	2 cut(s)	220, 530
BbsI	GAAGAC	1 cut(s)	144
Bbv12I	GWGCWC	2 cut(s)	220, 530
BbvI	GCAGC	3 cut(s)	44, 334, 490
BccI	CCATC	3 cut(s)	109, 451, 506
BceAI	ACGGC	1 cut(s)	764
BciVI	GTATCC	1 cut(s)	509
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	3 cut(s)	522, 587, 937
BfoI	RGCGCY	1 cut(s)	284
BfrI	CTTAAG	1 cut(s)	548
BfuI	GTATCC	1 cut(s)	509
BisI	GCNGC	5 cut(s)	33, 77, 257, 348, 479
BlnI	CCTAGG	1 cut(s)	521
BlsI	GCNGC	5 cut(s)	34, 78, 258, 349, 480
Bme1390I	CCNGG	1 cut(s)	230
BmiI	GGNNCC	3 cut(s)	282, 435, 917
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	2 cut(s)	95, 386
BmuI	ACTGGG	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	2 cut(s)	41, 281
BsaI	GGTCTC	1 cut(s)	677
BsaJI	CCNNGG	2 cut(s)	246, 521
BsaWI	WCCGGW	1 cut(s)	164
BsaXI	ACNNNNNCTCC	4 cut(s)	181, 211, 805, 835
Bsc4I	CCNNNNNNNGG	4 cut(s)	235, 236, 290, 647
Bse1I	ACTGG	1 cut(s)	652
Bse3DI	GCAATG	3 cut(s)	16, 42, 311
BseDI	CCNNGG	2 cut(s)	246, 521
BseGI	GGATG	3 cut(s)	101, 517, 822
BseLI	CCNNNNNNNGG	4 cut(s)	235, 236, 290, 647
BseMI	GCAATG	3 cut(s)	16, 42, 311
BseMII	CTCAG	3 cut(s)	86, 233, 251
BseNI	ACTGG	1 cut(s)	652
BseX3I	CGGCCG	1 cut(s)	77
BseXI	GCAGC	3 cut(s)	44, 334, 490
Bsh1236I	CGCG	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	54, 79, 779
BshNI	GGYRCC	1 cut(s)	280
BsiEI	CGRYCG	1 cut(s)	80
BsiHKAI	GWGCWC	2 cut(s)	220, 530
BsiSI	CCGG	3 cut(s)	165, 230, 569
BslFI	GGGAC	1 cut(s)	578
BslI	CCNNNNNNNGG	4 cut(s)	235, 236, 290, 647
BsmAI	GTCTC	1 cut(s)	677
BsmFI	GGGAC	1 cut(s)	578
BsnI	GGCC	3 cut(s)	54, 79, 779
Bso31I	GGTCTC	1 cut(s)	677
Bsp1286I	GDGCHC	2 cut(s)	220, 530
Bsp143I	GATC	2 cut(s)	571, 637
BspACI	CCGC	4 cut(s)	76, 96, 257, 677
BspANI	GGCC	3 cut(s)	54, 79, 779
BspCNI	CTCAG	3 cut(s)	85, 232, 252
BspFNI	CGCG	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	453
BspLI	GGNNCC	3 cut(s)	282, 435, 917
BspPI	GGATC	2 cut(s)	579, 632
BspT107I	GGYRCC	1 cut(s)	280
BspTI	CTTAAG	1 cut(s)	548
BspTNI	GGTCTC	1 cut(s)	677
BsrDI	GCAATG	3 cut(s)	16, 42, 311
BsrI	ACTGG	1 cut(s)	652
BssECI	CCNNGG	2 cut(s)	246, 521
BssMI	GATC	2 cut(s)	571, 637
BssNI	GRCGYC	2 cut(s)	41, 281
BssT1I	CCWWGG	2 cut(s)	246, 521
Bst4CI	ACNGT	2 cut(s)	150, 838
Bst6I	CTCTTC	1 cut(s)	594
BstACI	GRCGYC	2 cut(s)	41, 281
BstAFI	CTTAAG	1 cut(s)	548
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstC8I	GCNNGC	7 cut(s)	7, 56, 285, 311, 402, 537, 890
BstDEI	CTNAG	4 cut(s)	72, 219, 260, 362
BstF5I	GGATG	3 cut(s)	101, 517, 822
BstFNI	CGCG	1 cut(s)	98
BstH2I	RGCGCY	1 cut(s)	284
BstHHI	GCGC	3 cut(s)	100, 283, 843
BstKTI	GATC	2 cut(s)	574, 640
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	2 cut(s)	571, 637
BstMCI	CGRYCG	1 cut(s)	80
BstMWI	GCNNNNNNNGC	6 cut(s)	38, 64, 73, 310, 374, 475
BstNSI	RCATGY	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	228
BstUI	CGCG	1 cut(s)	98
BstV1I	GCAGC	3 cut(s)	44, 334, 490
BstV2I	GAAGAC	1 cut(s)	144
BstX2I	RGATCY	2 cut(s)	571, 637
BstXI	CCANNNNNNTGG	1 cut(s)	329
BstYI	RGATCY	2 cut(s)	571, 637
BstZI	CGGCCG	1 cut(s)	77
BsuI	GTATCC	1 cut(s)	509
BsuRI	GGCC	3 cut(s)	54, 79, 779
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	3 cut(s)	101, 517, 822
BtsIMutI	CAGTG	1 cut(s)	843
Cac8I	GCNNGC	7 cut(s)	7, 56, 285, 311, 402, 537, 890
CaiI	CAGNNNCTG	1 cut(s)	290
CciI	TCATGA	1 cut(s)	453
CfoI	GCGC	3 cut(s)	100, 283, 843
CseI	GACGC	3 cut(s)	30, 458, 687
Csp6I	GTAC	2 cut(s)	412, 782
CviAII	CATG	3 cut(s)	341, 415, 454
CviQI	GTAC	2 cut(s)	412, 782
DdeI	CTNAG	4 cut(s)	72, 219, 260, 362
DinI	GGCGCC	1 cut(s)	282
DpnI	GATC	2 cut(s)	573, 639
DpnII	GATC	2 cut(s)	571, 637
DraI	TTTAAA	1 cut(s)	666
EaeI	YGGCCR	1 cut(s)	77
EagI	CGGCCG	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
EciI	GGCGGA	1 cut(s)	666
Ecl136II	GAGCTC	2 cut(s)	218, 528
EclXI	CGGCCG	1 cut(s)	77
Eco130I	CCWWGG	2 cut(s)	246, 521
Eco24I	GRGCYC	2 cut(s)	220, 530
Eco31I	GGTCTC	1 cut(s)	677
Eco32I	GATATC	1 cut(s)	273
Eco52I	CGGCCG	1 cut(s)	77
Eco53kI	GAGCTC	2 cut(s)	218, 528
Eco57I	CTGAAG	2 cut(s)	618, 860
EcoICRI	GAGCTC	2 cut(s)	218, 528
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	2 cut(s)	246, 521
EcoT38I	GRGCYC	2 cut(s)	220, 530
EgeI	GGCGCC	1 cut(s)	282
EheI	GGCGCC	1 cut(s)	282
ErhI	CCWWGG	2 cut(s)	246, 521
FaeI	CATG	3 cut(s)	344, 418, 457
FaiI	YATR	7 cut(s)	50, 330, 342, 416, 455, 658, 894
FalI	AAGNNNNNCTT	2 cut(s)	591, 623
FaqI	GGGAC	1 cut(s)	578
FatI	CATG	3 cut(s)	340, 414, 453
Fnu4HI	GCNGC	5 cut(s)	33, 77, 257, 348, 479
FokI	GGATG	3 cut(s)	88, 524, 829
FriOI	GRGCYC	2 cut(s)	220, 530
Fsp4HI	GCNGC	5 cut(s)	33, 77, 257, 348, 479
FspBI	CTAG	3 cut(s)	522, 587, 937
GlaI	GCGC	3 cut(s)	99, 282, 842
GluI	GCNGC	5 cut(s)	33, 77, 257, 348, 479
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	1 cut(s)	284
HaeIII	GGCC	3 cut(s)	54, 79, 779
HapII	CCGG	3 cut(s)	165, 230, 569
HgaI	GACGC	3 cut(s)	30, 458, 687
HhaI	GCGC	3 cut(s)	100, 283, 843
Hin1I	GRCGYC	2 cut(s)	41, 281
Hin1II	CATG	3 cut(s)	344, 418, 457
Hin6I	GCGC	3 cut(s)	98, 281, 841
HinP1I	GCGC	3 cut(s)	98, 281, 841
HincII	GTYRAC	1 cut(s)	807
HindII	GTYRAC	1 cut(s)	807
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	485, 604, 880
HpaI	GTTAAC	1 cut(s)	807
HpaII	CCGG	3 cut(s)	165, 230, 569
HphI	GGTGA	4 cut(s)	472, 700, 751, 837
Hpy166II	GTNNAC	4 cut(s)	16, 25, 807, 824
Hpy188I	TCNGA	3 cut(s)	222, 768, 879
Hpy188III	TCNNGA	3 cut(s)	437, 454, 587
Hpy8I	GTNNAC	4 cut(s)	16, 25, 807, 824
HpyAV	CCTTC	4 cut(s)	78, 390, 457, 624
HpyCH4III	ACNGT	2 cut(s)	150, 838
HpyCH4IV	ACGT	2 cut(s)	18, 715
HpyCH4V	TGCA	5 cut(s)	9, 340, 377, 404, 478
HpyF10VI	GCNNNNNNNGC	6 cut(s)	38, 64, 73, 310, 374, 475
HpyF3I	CTNAG	4 cut(s)	72, 219, 260, 362
HpySE526I	ACGT	2 cut(s)	18, 715
Hsp92I	GRCGYC	2 cut(s)	41, 281
Hsp92II	CATG	3 cut(s)	344, 418, 457
HspAI	GCGC	3 cut(s)	98, 281, 841
KasI	GGCGCC	1 cut(s)	280
KspAI	GTTAAC	1 cut(s)	807
Kzo9I	GATC	2 cut(s)	571, 637
LmnI	GCTCC	3 cut(s)	466, 525, 921
Lsp1109I	GCAGC	3 cut(s)	44, 334, 490
LweI	GCATC	2 cut(s)	95, 386
MaeI	CTAG	3 cut(s)	522, 587, 937
MaeII	ACGT	2 cut(s)	18, 715
MalI	GATC	2 cut(s)	573, 639
MboI	GATC	2 cut(s)	571, 637
MboII	GAAGA	6 cut(s)	144, 575, 611, 639, 664, 743
MfeI	CAATTG	2 cut(s)	428, 540
MflI	RGATCY	2 cut(s)	571, 637
MhlI	GDGCHC	2 cut(s)	220, 530
MluCI	AATT	7 cut(s)	106, 223, 428, 540, 554, 743, 830
Mly113I	GGCGCC	1 cut(s)	281
MmeI	TCCRAC	1 cut(s)	604
MnlI	CCTC	5 cut(s)	154, 187, 195, 769, 807
MroXI	GAANNNNTTC	1 cut(s)	603
MseI	TTAA	5 cut(s)	549, 564, 665, 794, 806
MslI	CAYNNNNRTG	2 cut(s)	458, 768
MspA1I	CMGCKG	2 cut(s)	76, 259
MspCI	CTTAAG	1 cut(s)	548
MspI	CCGG	3 cut(s)	165, 230, 569
MspR9I	CCNGG	1 cut(s)	230
MunI	CAATTG	2 cut(s)	428, 540
MvnI	CGCG	1 cut(s)	98
MwoI	GCNNNNNNNGC	6 cut(s)	38, 64, 73, 310, 374, 475
NarI	GGCGCC	1 cut(s)	281
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	2 cut(s)	571, 637
NlaIII	CATG	3 cut(s)	344, 418, 457
NlaIV	GGNNCC	3 cut(s)	282, 435, 917
NspI	RCATGY	1 cut(s)	344
PagI	TCATGA	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	603
PfeI	GAWTC	3 cut(s)	485, 604, 880
PflMI	CCANNNNNTGG	1 cut(s)	290
PkrI	GCNGC	5 cut(s)	34, 78, 258, 349, 480
PluTI	GGCGCC	1 cut(s)	284
Psp124BI	GAGCTC	2 cut(s)	220, 530
Psp1406I	AACGTT	1 cut(s)	715
PspN4I	GGNNCC	3 cut(s)	282, 435, 917
PstNI	CAGNNNCTG	1 cut(s)	290
PsuI	RGATCY	2 cut(s)	571, 637
RsaI	GTAC	2 cut(s)	413, 783
RsaNI	GTAC	2 cut(s)	412, 782
RseI	CAYNNNNRTG	2 cut(s)	458, 768
SacI	GAGCTC	2 cut(s)	220, 530
SaqAI	TTAA	5 cut(s)	549, 564, 665, 794, 806
SatI	GCNGC	5 cut(s)	33, 77, 257, 348, 479
Sau3AI	GATC	2 cut(s)	571, 637
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	2 cut(s)	220, 530
SfaNI	GCATC	2 cut(s)	95, 386
SfoI	GGCGCC	1 cut(s)	282
SmiMI	CAYNNNNRTG	2 cut(s)	458, 768
SmlI	CTYRAG	1 cut(s)	548
SmoI	CTYRAG	1 cut(s)	548
Sse9I	AATT	7 cut(s)	106, 223, 428, 540, 554, 743, 830
SsiI	CCGC	4 cut(s)	76, 96, 257, 677
SspDI	GGCGCC	1 cut(s)	280
SspMI	CTAG	3 cut(s)	522, 587, 937
SstI	GAGCTC	2 cut(s)	220, 530
StyD4I	CCNGG	1 cut(s)	228
StyI	CCWWGG	2 cut(s)	246, 521
TaaI	ACNGT	2 cut(s)	150, 838
TaiI	ACGT	2 cut(s)	21, 718
TasI	AATT	7 cut(s)	106, 223, 428, 540, 554, 743, 830
TatI	WGTACW	1 cut(s)	411
TauI	GCSGC	2 cut(s)	79, 259
TfiI	GAWTC	3 cut(s)	485, 604, 880
Tru1I	TTAA	5 cut(s)	549, 564, 665, 794, 806
Tru9I	TTAA	5 cut(s)	549, 564, 665, 794, 806
TscAI	CASTG	1 cut(s)	843
TseI	GCWGC	3 cut(s)	32, 347, 478
TspDTI	ATGAA	3 cut(s)	148, 456, 568
TspGWI	ACGGA	1 cut(s)	189
TspRI	CASTG	1 cut(s)	843
Van91I	CCANNNNNTGG	1 cut(s)	290
Vha464I	CTTAAG	1 cut(s)	548
XapI	RAATTY	1 cut(s)	223
XbaI	TCTAGA	1 cut(s)	586
XceI	RCATGY	1 cut(s)	344
XmaJI	CCTAGG	1 cut(s)	521
XmnI	GAANNNNTTC	1 cut(s)	603
XspI	CTAG	3 cut(s)	522, 587, 937

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.