Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Reverse (-)

47975558 .. 47978820

Gene Structure 3263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG380300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACTGACCTGTATGATTTGGTACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGCGAAAATGGGAAGCGTGCAAGGGCCTACATGGACAAAGGACAATTGGTGCCAGATGAAATAGTTGTCATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCCCTAGGAGCTCATCGCAACCAATTGCTCTTAAGGAATTCAGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGGAGAGATTCTTGTTGACAGTAGTTGGAAGAAGAGACCCCAGAGGGCTCACCCAGCGTTTTGATGATACAGAAGAAAAGGTGAAACTTCGATTGCACACTCATCATCAAAATGTGGAGGCAGTACTTTCATTATATGAAGACATAACCCTTAAGGTGGACGGGAGTGGTACCAAGGATGATGTGTTTGCCCAAATTGATGCCGCACTGGCAAAGCTTCTTGAGAAAAAGCGGGCTACCACAGAACCTTTGGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

180

Amino Acids

20.31

Weight (kDa)

6.53

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	3 - 142	2.3e-28	Adenylate kinase
AAA_17	PF13207	5 - 121	1.7e-11	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	452
AccB1I	GGYRCC	2 cut(s)	118, 452
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	3 cut(s)	53, 486, 514
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	1 cut(s)	241
AfaI	GTAC	3 cut(s)	24, 408, 454
AfiI	CCNNNNNNNGG	1 cut(s)	439
AflII	CTTAAG	2 cut(s)	235, 434
AflIII	ACRYGT	1 cut(s)	25
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	4 cut(s)	215, 248, 499, 539
AluI	AGCT	4 cut(s)	215, 248, 499, 539
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	1 cut(s)	266
Ama87I	CYCGRG	1 cut(s)	174
AoxI	GGCC	1 cut(s)	93
ApeKI	GCWGC	2 cut(s)	32, 536
ApoI	RAATTY	1 cut(s)	241
Asp718I	GGTACC	1 cut(s)	452
AspA2I	CCTAGG	1 cut(s)	208
AspS9I	GGNCC	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	157, 325, 376
AvaI	CYCGRG	1 cut(s)	174
AvrII	CCTAGG	1 cut(s)	208
BanI	GGYRCC	2 cut(s)	118, 452
BanII	GRGCYC	2 cut(s)	217, 333
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	2 cut(s)	136, 191
BciT130I	CCWGG	1 cut(s)	284
BciVI	GTATCC	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	209
BfrI	CTTAAG	2 cut(s)	235, 434
BfuI	GTATCC	1 cut(s)	194
BglI	GCCNNNNNGGC	1 cut(s)	491
BisI	GCNGC	3 cut(s)	33, 486, 537
BlnI	CCTAGG	1 cut(s)	208
BlsI	GCNGC	3 cut(s)	34, 487, 538
BmcAI	AGTACT	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	174
BmgT120I	GGNCC	1 cut(s)	93
BmiI	GGNNCC	2 cut(s)	120, 454
BmrFI	CCNGG	1 cut(s)	284
BmsI	GCATC	2 cut(s)	71, 472
BpiI	GAAGAC	1 cut(s)	429
BpmI	CTGGAG	2 cut(s)	57, 305
BpuEI	CTTGAG	1 cut(s)	524
BsaI	GGTCTC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	208, 456
Bsc4I	CCNNNNNNNGG	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	2 cut(s)	208, 456
BseGI	GGATG	2 cut(s)	202, 466
BseLI	CCNNNNNNNGG	1 cut(s)	439
BseNI	ACTGG	1 cut(s)	495
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	336
BshFI	GGCC	1 cut(s)	95
BshNI	GGYRCC	2 cut(s)	118, 452
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	256
BslI	CCNNNNNNNGG	1 cut(s)	439
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	312
BsoBI	CYCGRG	1 cut(s)	174
Bsp1286I	GDGCHC	2 cut(s)	217, 333
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	3 cut(s)	53, 486, 514
BspANI	GGCC	1 cut(s)	95
BspHI	TCATGA	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	120, 454
BspPI	GGATC	1 cut(s)	266
BspT107I	GGYRCC	2 cut(s)	118, 452
BspTI	CTTAAG	2 cut(s)	235, 434
BspTNI	GGTCTC	1 cut(s)	312
BsrBI	CCGCTC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	495
BssECI	CCNNGG	2 cut(s)	208, 456
BssMI	GATC	1 cut(s)	258
BssT1I	CCWWGG	2 cut(s)	208, 456
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	1 cut(s)	304
Bst6I	CTCTTC	1 cut(s)	310
BstAFI	CTTAAG	2 cut(s)	235, 434
BstC8I	GCNNGC	3 cut(s)	87, 188, 516
BstDEI	CTNAG	2 cut(s)	47, 540
BstF5I	GGATG	2 cut(s)	202, 466
BstKTI	GATC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 337, 491
BstNI	CCWGG	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	29
BstSCI	CCNGG	1 cut(s)	282
BstV1I	GCAGC	1 cut(s)	19
BstV2I	GAAGAC	1 cut(s)	429
BstX2I	RGATCY	1 cut(s)	258
BstYI	RGATCY	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	194
BsuRI	GGCC	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	203
BtsCI	GGATG	2 cut(s)	202, 466
BtsIMutI	CAGTG	1 cut(s)	488
Cac8I	GCNNGC	3 cut(s)	87, 188, 516
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	93
CseI	GACGC	1 cut(s)	143
Csp6I	GTAC	3 cut(s)	23, 407, 453
CviAII	CATG	3 cut(s)	26, 100, 139
CviQI	GTAC	3 cut(s)	23, 407, 453
DdeI	CTNAG	2 cut(s)	47, 540
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eam1104I	CTCTTC	1 cut(s)	310
EarI	CTCTTC	1 cut(s)	310
Ecl136II	GAGCTC	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	208, 456
Eco24I	GRGCYC	2 cut(s)	217, 333
Eco31I	GGTCTC	1 cut(s)	312
Eco53kI	GAGCTC	1 cut(s)	215
Eco88I	CYCGRG	1 cut(s)	174
EcoICRI	GAGCTC	1 cut(s)	215
EcoO109I	RGGNCCY	1 cut(s)	93
EcoRI	GAATTC	1 cut(s)	241
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	2 cut(s)	208, 456
EcoT38I	GRGCYC	2 cut(s)	217, 333
ErhI	CCWWGG	2 cut(s)	208, 456
FaeI	CATG	3 cut(s)	29, 103, 142
FaiI	YATR	7 cut(s)	15, 27, 101, 140, 418, 420, 428
FatI	CATG	3 cut(s)	25, 99, 138
FauI	CCCGC	1 cut(s)	507
Fnu4HI	GCNGC	3 cut(s)	33, 486, 537
FokI	GGATG	2 cut(s)	209, 473
FriOI	GRGCYC	2 cut(s)	217, 333
Fsp4HI	GCNGC	3 cut(s)	33, 486, 537
FspBI	CTAG	1 cut(s)	209
GluI	GCNGC	3 cut(s)	33, 486, 537
GsaI	CCCAGC	1 cut(s)	340
GsuI	CTGGAG	2 cut(s)	57, 305
HaeIII	GGCC	1 cut(s)	95
HapII	CCGG	1 cut(s)	256
HgaI	GACGC	1 cut(s)	143
Hin1II	CATG	3 cut(s)	29, 103, 142
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	2 cut(s)	170, 291
HpaII	CCGG	1 cut(s)	256
HphI	GGTGA	3 cut(s)	157, 325, 376
Hpy166II	GTNNAC	2 cut(s)	300, 442
Hpy188III	TCNNGA	5 cut(s)	139, 174, 176, 274, 503
Hpy8I	GTNNAC	2 cut(s)	300, 442
HpyCH4III	ACNGT	1 cut(s)	304
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	3 cut(s)	62, 89, 379
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 337, 491
HpyF3I	CTNAG	2 cut(s)	47, 540
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	3 cut(s)	29, 103, 142
KpnI	GGTACC	1 cut(s)	456
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	69, 212
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	2 cut(s)	71, 472
MaeI	CTAG	1 cut(s)	209
MaeII	ACGT	1 cut(s)	278
MalI	GATC	1 cut(s)	260
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	1 cut(s)	258
MboII	GAAGA	5 cut(s)	262, 324, 327, 368, 434
MfeI	CAATTG	2 cut(s)	113, 227
MflI	RGATCY	1 cut(s)	258
MhlI	GDGCHC	2 cut(s)	217, 333
MluCI	AATT	5 cut(s)	57, 113, 227, 241, 477
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	2 cut(s)	320, 394
MseI	TTAA	2 cut(s)	236, 435
MslI	CAYNNNNRTG	2 cut(s)	143, 393
MspCI	CTTAAG	2 cut(s)	235, 434
MspI	CCGG	1 cut(s)	256
MspR9I	CCNGG	1 cut(s)	284
MunI	CAATTG	2 cut(s)	113, 227
MvaI	CCWGG	1 cut(s)	284
MwoI	GCNNNNNNNGC	3 cut(s)	59, 337, 491
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	3 cut(s)	29, 103, 142
NlaIV	GGNNCC	2 cut(s)	120, 454
NspI	RCATGY	1 cut(s)	29
PaeR7I	CTCGAG	1 cut(s)	174
PagI	TCATGA	1 cut(s)	138
PciI	ACATGT	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	170, 291
PfoI	TCCNGGA	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	34, 487, 538
PscI	ACATGT	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	217
Psp6I	CCWGG	1 cut(s)	282
PspFI	CCCAGC	1 cut(s)	336
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	2 cut(s)	120, 454
PspPI	GGNCC	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	258
RsaI	GTAC	3 cut(s)	24, 408, 454
RsaNI	GTAC	3 cut(s)	23, 407, 453
RseI	CAYNNNNRTG	2 cut(s)	143, 393
SacI	GAGCTC	1 cut(s)	217
SaqAI	TTAA	2 cut(s)	236, 435
SatI	GCNGC	3 cut(s)	33, 486, 537
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	93
ScaI	AGTACT	1 cut(s)	408
ScrFI	CCNGG	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	217, 333
SetI	ASST	9 cut(s)	12, 217, 250, 281, 366, 441, 501, 532, 541
SfaNI	GCATC	2 cut(s)	71, 472
Sfr274I	CTCGAG	1 cut(s)	174
SlaI	CTCGAG	1 cut(s)	174
SmiMI	CAYNNNNRTG	2 cut(s)	143, 393
SmlI	CTYRAG	4 cut(s)	174, 235, 434, 503
SmoI	CTYRAG	4 cut(s)	174, 235, 434, 503
Sse9I	AATT	5 cut(s)	57, 113, 227, 241, 477
SsiI	CCGC	3 cut(s)	53, 486, 514
SspMI	CTAG	1 cut(s)	209
SstI	GAGCTC	1 cut(s)	217
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	2 cut(s)	208, 456
TaaI	ACNGT	1 cut(s)	304
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	3 cut(s)	175, 251, 373
TasI	AATT	5 cut(s)	57, 113, 227, 241, 477
TatI	WGTACW	1 cut(s)	406
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	2 cut(s)	170, 291
Tru1I	TTAA	2 cut(s)	236, 435
Tru9I	TTAA	2 cut(s)	236, 435
TscAI	CASTG	1 cut(s)	495
TseI	GCWGC	2 cut(s)	32, 536
TspDTI	ATGAA	4 cut(s)	141, 255, 402, 435
TspRI	CASTG	1 cut(s)	495
Vha464I	CTTAAG	2 cut(s)	235, 434
XapI	RAATTY	1 cut(s)	241
XceI	RCATGY	1 cut(s)	29
XcmI	CCANNNNNNNNNTGG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	174
XmaJI	CCTAGG	1 cut(s)	208
XspI	CTAG	1 cut(s)	209
ZrmI	AGTACT	1 cut(s)	408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.