Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Reverse (-)

45578187 .. 45582055

Gene Structure 3869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20030

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGACTGACCTGGCGGTGCGGTGTGCTTCTAAGGCTGAGCCGCTCAGAGTTATGATATCCGGGGCGCCTGCTTCGGGTAAAGGAACGCAATGCGAGCTCATTACTCAGAAATATGATTTGGTACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGTGAAAATGGGAAGCGTGCAAGGGCCTACATGGACAAAGGACAATTGGTGCCAGATGAAATAGTTGTCATGGTAGGGAAATTATATTCATATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCCCTAGGAGCTCATCGCAACCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAGTATTCTCCTCCAGAGACCCCAGAGATCGTGGCAAGGCTCACCCAGCGTTTTGATGATACAGAAGAAAAGGTGAAACTTCGATTGCACACTCTTCATCAAAATGTGGAGGCAGTACTTTCATTATATGAAGACATAACCCTTAAGGTGGACGGGAGTAGGATGATGTGTTTGCCCAAATTGATGGCGCACTGGCAAAGCTTCTTGAGAAAAAGCGGGCTACCACAGAATCTTTGGCAGCTTAGAAGATGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

242

Amino Acids

27.31

Weight (kDa)

9.26

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	19 - 202	2.7e-34	Adenylate kinase
AAA_17	PF13207	21 - 78	7.1e-14	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	64, 217
AccBSI	CCGCTC	2 cut(s)	43, 152
AciI	CCGC	5 cut(s)	14, 19, 41, 152, 687
AclWI	GGATC	2 cut(s)	384, 437
AcsI	RAATTY	1 cut(s)	359
AcuI	CTGAAG	2 cut(s)	423, 491
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	2 cut(s)	123, 588
AfiI	CCNNNNNNNGG	3 cut(s)	74, 452, 619
AflII	CTTAAG	2 cut(s)	353, 614
AflIII	ACRYGT	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	9
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	4 cut(s)	97, 333, 672, 712
AluI	AGCT	4 cut(s)	97, 333, 672, 712
Alw21I	GWGCWC	2 cut(s)	99, 335
Alw26I	GTCTC	1 cut(s)	482
AlwI	GGATC	2 cut(s)	384, 437
Ama87I	CYCGRG	1 cut(s)	292
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	131, 709
ApoI	RAATTY	1 cut(s)	359
Asp700I	GAANNNNTTC	1 cut(s)	408
AspA2I	CCTAGG	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	67, 661
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	275, 505, 556
AvaI	CYCGRG	1 cut(s)	292
AvrII	CCTAGG	1 cut(s)	326
BanI	GGYRCC	2 cut(s)	64, 217
BanII	GRGCYC	2 cut(s)	99, 335
BbsI	GAAGAC	1 cut(s)	609
Bbv12I	GWGCWC	2 cut(s)	99, 335
BbvI	GCAGC	2 cut(s)	118, 721
BccI	CCATC	3 cut(s)	309, 474, 649
BciT130I	CCWGG	1 cut(s)	11
BciVI	GTATCC	1 cut(s)	312
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	482
BfaI	CTAG	1 cut(s)	327
BfoI	RGCGCY	1 cut(s)	68
BfrI	CTTAAG	2 cut(s)	353, 614
BfuI	GTATCC	1 cut(s)	312
BglII	AGATCT	1 cut(s)	459
BisI	GCNGC	3 cut(s)	41, 132, 710
BlnI	CCTAGG	1 cut(s)	326
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	3 cut(s)	42, 133, 711
BmcAI	AGTACT	1 cut(s)	588
Bme1390I	CCNGG	2 cut(s)	11, 61
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	2 cut(s)	66, 219
BmrFI	CCNGG	2 cut(s)	11, 61
BmsI	GCATC	1 cut(s)	170
BpiI	GAAGAC	1 cut(s)	609
BpmI	CTGGAG	2 cut(s)	156, 468
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	697
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	65
BsaI	GGTCTC	1 cut(s)	482
BsaJI	CCNNGG	2 cut(s)	60, 326
Bsc4I	CCNNNNNNNGG	3 cut(s)	74, 452, 619
Bse1I	ACTGG	2 cut(s)	457, 668
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	1 cut(s)	11
BseDI	CCNNGG	2 cut(s)	60, 326
BseGI	GGATG	2 cut(s)	320, 639
BseLI	CCNNNNNNNGG	3 cut(s)	74, 452, 619
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	27, 58, 119
BseNI	ACTGG	2 cut(s)	457, 668
BseRI	GAGGAG	1 cut(s)	471
BseXI	GCAGC	2 cut(s)	118, 721
BseYI	CCCAGC	1 cut(s)	516
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	2 cut(s)	64, 217
BsiHKAI	GWGCWC	2 cut(s)	99, 335
BsiHKCI	CYCGRG	1 cut(s)	292
BsiSI	CCGG	2 cut(s)	60, 374
BslI	CCNNNNNNNGG	3 cut(s)	74, 452, 619
BsmAI	GTCTC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	482
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	99, 335
Bsp143I	GATC	4 cut(s)	376, 442, 459, 498
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	5 cut(s)	14, 19, 41, 152, 687
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	3 cut(s)	28, 57, 118
BspLI	GGNNCC	2 cut(s)	66, 219
BspPI	GGATC	2 cut(s)	384, 437
BspT107I	GGYRCC	2 cut(s)	64, 217
BspTI	CTTAAG	2 cut(s)	353, 614
BspTNI	GGTCTC	1 cut(s)	482
BsrBI	CCGCTC	2 cut(s)	43, 152
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	2 cut(s)	457, 668
BssECI	CCNNGG	2 cut(s)	60, 326
BssMI	GATC	4 cut(s)	376, 442, 459, 498
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	399, 570
BstACI	GRCGYC	1 cut(s)	65
BstAFI	CTTAAG	2 cut(s)	353, 614
BstC8I	GCNNGC	5 cut(s)	69, 95, 186, 306, 689
BstDEI	CTNAG	6 cut(s)	30, 36, 44, 105, 146, 713
BstF5I	GGATG	2 cut(s)	320, 639
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	2 cut(s)	67, 661
BstKTI	GATC	4 cut(s)	379, 445, 462, 501
BstMAI	GTCTC	1 cut(s)	482
BstMBI	GATC	4 cut(s)	376, 442, 459, 498
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 94, 158, 517
BstNI	CCWGG	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	2 cut(s)	9, 59
BstV1I	GCAGC	2 cut(s)	118, 721
BstV2I	GAAGAC	1 cut(s)	609
BstX2I	RGATCY	3 cut(s)	376, 442, 459
BstXI	CCANNNNNNTGG	1 cut(s)	655
BstYI	RGATCY	3 cut(s)	376, 442, 459
BsuI	GTATCC	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	194
BtgZI	GCGATG	1 cut(s)	321
BtsCI	GGATG	2 cut(s)	320, 639
BtsIMutI	CAGTG	1 cut(s)	661
Cac8I	GCNNGC	5 cut(s)	69, 95, 186, 306, 689
CfoI	GCGC	2 cut(s)	67, 661
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	1 cut(s)	261
Csp6I	GTAC	2 cut(s)	122, 587
CviAII	CATG	3 cut(s)	125, 199, 238
CviQI	GTAC	2 cut(s)	122, 587
DdeI	CTNAG	6 cut(s)	30, 36, 44, 105, 146, 713
DinI	GGCGCC	1 cut(s)	66
DpnI	GATC	4 cut(s)	378, 444, 461, 500
DpnII	GATC	4 cut(s)	376, 442, 459, 498
Eam1104I	CTCTTC	2 cut(s)	399, 570
EarI	CTCTTC	2 cut(s)	399, 570
Ecl136II	GAGCTC	2 cut(s)	97, 333
Eco130I	CCWWGG	1 cut(s)	326
Eco24I	GRGCYC	2 cut(s)	99, 335
Eco31I	GGTCTC	1 cut(s)	482
Eco32I	GATATC	1 cut(s)	57
Eco53kI	GAGCTC	2 cut(s)	97, 333
Eco57I	CTGAAG	2 cut(s)	423, 491
Eco88I	CYCGRG	1 cut(s)	292
EcoICRI	GAGCTC	2 cut(s)	97, 333
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	9
EcoRV	GATATC	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	326
EcoT38I	GRGCYC	2 cut(s)	99, 335
EgeI	GGCGCC	1 cut(s)	66
EheI	GGCGCC	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	326
FaeI	CATG	3 cut(s)	128, 202, 241
FalI	AAGNNNNNCTT	2 cut(s)	396, 428
FatI	CATG	3 cut(s)	124, 198, 237
FauI	CCCGC	1 cut(s)	680
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	41, 132, 710
FokI	GGATG	2 cut(s)	327, 646
FriOI	GRGCYC	2 cut(s)	99, 335
Fsp4HI	GCNGC	3 cut(s)	41, 132, 710
FspBI	CTAG	1 cut(s)	327
GlaI	GCGC	2 cut(s)	66, 660
GluI	GCNGC	3 cut(s)	41, 132, 710
GsaI	CCCAGC	1 cut(s)	520
GsuI	CTGGAG	2 cut(s)	156, 468
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	60, 374
HgaI	GACGC	1 cut(s)	261
HhaI	GCGC	2 cut(s)	67, 661
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	128, 202, 241
Hin6I	GCGC	2 cut(s)	65, 659
HinP1I	GCGC	2 cut(s)	65, 659
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	670
HinfI	GANTC	3 cut(s)	288, 409, 700
HpaII	CCGG	2 cut(s)	60, 374
HphI	GGTGA	3 cut(s)	275, 505, 556
Hpy166II	GTNNAC	2 cut(s)	418, 622
Hpy188I	TCNGA	3 cut(s)	47, 108, 471
Hpy188III	TCNNGA	6 cut(s)	292, 294, 392, 401, 485, 676
Hpy8I	GTNNAC	2 cut(s)	418, 622
HpyAV	CCTTC	1 cut(s)	429
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	3 cut(s)	161, 188, 559
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 94, 158, 517
HpyF3I	CTNAG	6 cut(s)	30, 36, 44, 105, 146, 713
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	128, 202, 241
HspAI	GCGC	2 cut(s)	65, 659
KasI	GGCGCC	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	376, 442, 459, 498
LmnI	GCTCC	1 cut(s)	330
Lsp1109I	GCAGC	2 cut(s)	118, 721
LweI	GCATC	1 cut(s)	170
MaeI	CTAG	1 cut(s)	327
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	448
MalI	GATC	4 cut(s)	378, 444, 461, 500
MbiI	CCGCTC	2 cut(s)	43, 152
MboI	GATC	4 cut(s)	376, 442, 459, 498
MboII	GAAGA	7 cut(s)	380, 416, 444, 548, 557, 614, 729
MfeI	CAATTG	2 cut(s)	212, 345
MflI	RGATCY	3 cut(s)	376, 442, 459
MhlI	GDGCHC	2 cut(s)	99, 335
MluCI	AATT	6 cut(s)	156, 212, 248, 345, 359, 650
Mly113I	GGCGCC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	2 cut(s)	492, 574
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	2 cut(s)	354, 615
MslI	CAYNNNNRTG	1 cut(s)	573
MspCI	CTTAAG	2 cut(s)	353, 614
MspI	CCGG	2 cut(s)	60, 374
MspR9I	CCNGG	2 cut(s)	11, 61
MunI	CAATTG	2 cut(s)	212, 345
MvaI	CCWGG	1 cut(s)	11
MwoI	GCNNNNNNNGC	4 cut(s)	32, 94, 158, 517
NarI	GGCGCC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	61
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	4 cut(s)	376, 442, 459, 498
NlaIII	CATG	3 cut(s)	128, 202, 241
NlaIV	GGNNCC	2 cut(s)	66, 219
NspI	RCATGY	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	292
PciI	ACATGT	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	3 cut(s)	288, 409, 700
PkrI	GCNGC	3 cut(s)	42, 133, 711
PluTI	GGCGCC	1 cut(s)	68
PscI	ACATGT	1 cut(s)	124
Psp124BI	GAGCTC	2 cut(s)	99, 335
Psp6I	CCWGG	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	9
PspN4I	GGNNCC	2 cut(s)	66, 219
PspPI	GGNCC	1 cut(s)	192
PsuI	RGATCY	3 cut(s)	376, 442, 459
RsaI	GTAC	2 cut(s)	123, 588
RsaNI	GTAC	2 cut(s)	122, 587
RseI	CAYNNNNRTG	1 cut(s)	573
SacI	GAGCTC	2 cut(s)	99, 335
SaqAI	TTAA	2 cut(s)	354, 615
SatI	GCNGC	3 cut(s)	41, 132, 710
Sau3AI	GATC	4 cut(s)	376, 442, 459, 498
Sau96I	GGNCC	1 cut(s)	192
ScaI	AGTACT	1 cut(s)	588
ScrFI	CCNGG	2 cut(s)	11, 61
SduI	GDGCHC	2 cut(s)	99, 335
SetI	ASST	9 cut(s)	12, 99, 335, 399, 440, 546, 621, 674, 714
SfaNI	GCATC	1 cut(s)	170
SfoI	GGCGCC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	292
SlaI	CTCGAG	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	4 cut(s)	292, 353, 614, 676
SmoI	CTYRAG	4 cut(s)	292, 353, 614, 676
Sse9I	AATT	6 cut(s)	156, 212, 248, 345, 359, 650
SsiI	CCGC	5 cut(s)	14, 19, 41, 152, 687
SspDI	GGCGCC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	327
SstI	GAGCTC	2 cut(s)	99, 335
StyD4I	CCNGG	2 cut(s)	9, 59
StyI	CCWWGG	1 cut(s)	326
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	3 cut(s)	293, 369, 553
TasI	AATT	6 cut(s)	156, 212, 248, 345, 359, 650
TatI	WGTACW	1 cut(s)	586
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	288, 409, 700
Tru1I	TTAA	2 cut(s)	354, 615
Tru9I	TTAA	2 cut(s)	354, 615
TscAI	CASTG	1 cut(s)	668
TseI	GCWGC	2 cut(s)	131, 709
TspDTI	ATGAA	6 cut(s)	240, 246, 373, 557, 582, 615
TspRI	CASTG	1 cut(s)	668
Vha464I	CTTAAG	2 cut(s)	353, 614
XapI	RAATTY	1 cut(s)	359
XceI	RCATGY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	702
XhoI	CTCGAG	1 cut(s)	292
XmaJI	CCTAGG	1 cut(s)	326
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	1 cut(s)	327
ZrmI	AGTACT	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.