Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

19662071 .. 19663360

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1290 bp

ATGGCAGTGTGGGTTCGTATCAATGGACTACCAGTCAAATACTTCAAGCAGTACACCATGGAAAAGATTGGCAGTATGATTGGAAGAGTTGTCAGAGTTGATCAGCACACTCTTGCACAAGCCAGAGGGAAGTTCTGCAGAGTCTGTGTGGAGATTAACCTCAATGAGCCCTTGAAACCGTTTGTGGAACTTGATGGAAAACCATTTGGTGTTGTGTATGAAGGTATCTCCACAATTTGTTTCAACTGTGGGGTTTATGGTCATGTAAAGGACAAATGCCCTTACGTAAGTGAGAATGCAGCCTCTGGTTCAGCTATTTCTGTCAATACAAAAGTGGATGAACCCATGATTACTGAGATTTCAAATGGTAGGCAAGATGATGTTGTTGTGCAGCTCCCTAGTAGCATTGAGGCGCCTATTGCAGAAAAATCAAATGTCATTGATACTCAACCTGCTACCTCTACGGTTAAAATGGCAAAACCGAACGTGGGACCTTGGATGATAATGAACTACAAAAACAGGAAAGCTTCTACCTCCAGCCAAACCCAAGCTAAGGGGAAAGGAAACTCTGGTTCAAGATTTGCTCCTTTGCAAAAAGATGATGATGAAAACCCTACAGACAATGTAGAAAAGGAGACTCCTGTGAGTAAGCCTATCTTTGGCCCAGTGGAATTTGCAAATGTACCTAAAATTGTGAAAGTTTGGAAGCAGGTGCAGGAAAAAGCTGGCAAAATAGCTGCAAAGGAGGCTAAACTTAAGGGTAAAAGCACTGTTGTTAGTATCCCTCCTGCCAATACGAGGAAAATTGCTTCTATAAGCAGGAATCCCTTAAAGGATATTTCCAATAAGGGAGGTGGTTCCAATGGTAGCTCCTCCTCCTCCTCAAAATCAAAGAATATTGCTAGAAAGGAAACCAAAATATCTAATTCTGAAGCCACTGTGTCTGTGGATATTGCGTCATTTTCTTTTATGAAGGGAGTGTGCAAGGGTGGTTCTGTTGATGATCAACCTTTGTCTGGTATTATTCATAATGCCACCCTGAGCAGTTCCAATAATGTGTGTCCTAGTAATAGTTCGTTTGATGCTATCTTTGGTCACACGCCTCCTGAGGAGAATATGGAGCAATTTGGAATTAACAAGGTTGGTGGTGATGGCAGTTCTTGTGATATTAATTCCCACATGAATATAAACCTCTCATCGAATACAGGGCAGAATTCTGCCTCCTCCGACATGGTTACTGTTGAGCCTCACCTACCCTCTCCTGTCGGGGAGGATATGGTTGTATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

429

Amino Acids

45.9

Weight (kDa)

8.73

Isoelectric Point (pI)

32.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	700
Acc36I	ACCTGC	2 cut(s)	460, 700
AccB1I	GGYRCC	1 cut(s)	412
AcsI	RAATTY	2 cut(s)	671, 1213
AcuI	CTGAAG	1 cut(s)	951
AcyI	GRCGYC	1 cut(s)	413
AfaI	GTAC	2 cut(s)	53, 684
AfiI	CCNNNNNNNGG	5 cut(s)	488, 553, 659, 798, 1016
AflII	CTTAAG	1 cut(s)	755
AgsI	TTSAA	5 cut(s)	46, 175, 244, 363, 576
AhdI	GACNNNNNGTC	1 cut(s)	32
AluBI	AGCT	7 cut(s)	314, 394, 527, 551, 725, 737, 870
AluI	AGCT	7 cut(s)	314, 394, 527, 551, 725, 737, 870
Alw26I	GTCTC	1 cut(s)	629
AlwNI	CAGNNNCTG	2 cut(s)	144, 305
AoxI	GGCC	1 cut(s)	661
ApeKI	GCWGC	3 cut(s)	299, 391, 737
ApoI	RAATTY	2 cut(s)	671, 1213
AseI	ATTAAT	1 cut(s)	1170
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	2 cut(s)	491, 662
AsuHPI	GGTGA	2 cut(s)	1160, 1241
AvaII	GGWCC	1 cut(s)	491
AxyI	CCTNAGG	1 cut(s)	1107
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	171
BbvI	GCAGC	3 cut(s)	311, 403, 724
BccI	CCATC	2 cut(s)	188, 1145
BciVI	GTATCC	1 cut(s)	791
BclI	TGATCA	2 cut(s)	100, 1003
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	3 cut(s)	399, 903, 1065
BfmI	CTRYAG	2 cut(s)	136, 615
BfoI	RGCGCY	1 cut(s)	416
BfrI	CTTAAG	1 cut(s)	755
BfuAI	ACCTGC	2 cut(s)	460, 700
BfuI	GTATCC	1 cut(s)	791
BisI	GCNGC	3 cut(s)	300, 392, 738
BlsI	GCNGC	3 cut(s)	301, 393, 739
Bme18I	GGWCC	1 cut(s)	491
BmeRI	GACNNNNNGTC	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	491, 662
BmiI	GGNNCC	3 cut(s)	414, 492, 859
BmrI	ACTGGG	1 cut(s)	659
BmsI	GCATC	1 cut(s)	1072
BmuI	ACTGGG	1 cut(s)	659
BpmI	CTGGAG	1 cut(s)	520
Bpu10I	CCTNAGC	2 cut(s)	552, 1040
BsaAI	YACGTR	1 cut(s)	286
BsaHI	GRCGYC	1 cut(s)	413
BsaJI	CCNNGG	2 cut(s)	57, 494
Bsc4I	CCNNNNNNNGG	5 cut(s)	488, 553, 659, 798, 1016
Bse1I	ACTGG	2 cut(s)	32, 665
Bse21I	CCTNAGG	1 cut(s)	1107
BseDI	CCNNGG	2 cut(s)	57, 494
BseGI	GGATG	2 cut(s)	343, 504
BseLI	CCNNNNNNNGG	5 cut(s)	488, 553, 659, 798, 1016
BseMII	CTCAG	3 cut(s)	345, 1031, 1098
BseNI	ACTGG	2 cut(s)	32, 665
BseRI	GAGGAG	6 cut(s)	862, 865, 868, 871, 1124, 1213
BseXI	GCAGC	3 cut(s)	311, 403, 724
BsgI	GTGCAG	2 cut(s)	410, 734
BshFI	GGCC	1 cut(s)	663
BshNI	GGYRCC	1 cut(s)	412
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	5 cut(s)	488, 553, 659, 798, 1016
BsmAI	GTCTC	1 cut(s)	629
BsmFI	GGGAC	1 cut(s)	504
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	1 cut(s)	663
Bsp1286I	GDGCHC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	100, 1003
Bsp19I	CCATGG	1 cut(s)	57
BspANI	GGCC	1 cut(s)	663
BspCNI	CTCAG	3 cut(s)	346, 1032, 1099
BspLI	GGNNCC	3 cut(s)	414, 492, 859
BspMAI	CTGCAG	1 cut(s)	140
BspMI	ACCTGC	2 cut(s)	460, 700
BspT107I	GGYRCC	1 cut(s)	412
BspTI	CTTAAG	1 cut(s)	755
BsrI	ACTGG	2 cut(s)	32, 665
BssECI	CCNNGG	2 cut(s)	57, 494
BssMI	GATC	2 cut(s)	100, 1003
BssNI	GRCGYC	1 cut(s)	413
BssT1I	CCWWGG	2 cut(s)	57, 494
Bst4CI	ACNGT	6 cut(s)	180, 248, 466, 772, 940, 1240
Bst6I	CTCTTC	1 cut(s)	79
BstACI	GRCGYC	1 cut(s)	413
BstAFI	CTTAAG	1 cut(s)	755
BstBAI	YACGTR	1 cut(s)	286
BstC8I	GCNNGC	1 cut(s)	727
BstDEI	CTNAG	4 cut(s)	354, 552, 1040, 1107
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	343, 504
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	2 cut(s)	103, 1006
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	2 cut(s)	100, 1003
BstMWI	GCNNNNNNNGC	2 cut(s)	419, 746
BstSFI	CTRYAG	2 cut(s)	136, 615
BstSNI	TACGTA	1 cut(s)	286
BstV1I	GCAGC	3 cut(s)	311, 403, 724
Bsu36I	CCTNAGG	1 cut(s)	1107
BsuI	GTATCC	1 cut(s)	791
BsuRI	GGCC	1 cut(s)	663
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	343, 504
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 672, 768, 936
BveI	ACCTGC	2 cut(s)	460, 700
Cac8I	GCNNGC	1 cut(s)	727
CaiI	CAGNNNCTG	2 cut(s)	144, 305
CfoI	GCGC	1 cut(s)	415
Cfr13I	GGNCC	2 cut(s)	491, 662
CseI	GACGC	1 cut(s)	945
Csp6I	GTAC	2 cut(s)	52, 683
CspCI	CAANNNNNGTGG	2 cut(s)	1126, 1161
CviAII	CATG	5 cut(s)	58, 263, 346, 1180, 1231
CviQI	GTAC	2 cut(s)	52, 683
DdeI	CTNAG	4 cut(s)	354, 552, 1040, 1107
DinI	GGCGCC	1 cut(s)	414
DpnI	GATC	2 cut(s)	102, 1005
DpnII	GATC	2 cut(s)	100, 1003
DriI	GACNNNNNGTC	1 cut(s)	32
Eam1104I	CTCTTC	1 cut(s)	79
Eam1105I	GACNNNNNGTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	79
Eco105I	TACGTA	1 cut(s)	286
Eco130I	CCWWGG	2 cut(s)	57, 494
Eco24I	GRGCYC	1 cut(s)	171
Eco47I	GGWCC	1 cut(s)	491
Eco57I	CTGAAG	1 cut(s)	951
Eco81I	CCTNAGG	1 cut(s)	1107
EcoO109I	RGGNCCY	1 cut(s)	491
EcoRI	GAATTC	1 cut(s)	1213
EcoT14I	CCWWGG	2 cut(s)	57, 494
EcoT38I	GRGCYC	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	414
EheI	GGCGCC	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	57, 494
FaeI	CATG	5 cut(s)	61, 266, 349, 1183, 1234
FalI	AAGNNNNNCTT	2 cut(s)	641, 673
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	5 cut(s)	57, 262, 345, 1179, 1230
FbaI	TGATCA	2 cut(s)	100, 1003
Fnu4HI	GCNGC	3 cut(s)	300, 392, 738
FokI	GGATG	2 cut(s)	350, 511
FriOI	GRGCYC	1 cut(s)	171
Fsp4HI	GCNGC	3 cut(s)	300, 392, 738
FspBI	CTAG	3 cut(s)	399, 903, 1065
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	3 cut(s)	300, 392, 738
GsuI	CTGGAG	1 cut(s)	520
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	1 cut(s)	663
HgaI	GACGC	1 cut(s)	945
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	1 cut(s)	413
Hin1II	CATG	5 cut(s)	61, 266, 349, 1183, 1234
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	3 cut(s)	141, 637, 823
HphI	GGTGA	2 cut(s)	1160, 1241
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188I	TCNGA	3 cut(s)	95, 931, 1228
Hpy188III	TCNNGA	2 cut(s)	576, 1106
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	2 cut(s)	215, 967
HpyCH4III	ACNGT	6 cut(s)	180, 248, 466, 772, 940, 1240
HpyCH4IV	ACGT	2 cut(s)	285, 486
HpyF10VI	GCNNNNNNNGC	2 cut(s)	419, 746
HpyF3I	CTNAG	4 cut(s)	354, 552, 1040, 1107
HpySE526I	ACGT	2 cut(s)	285, 486
Hsp92I	GRCGYC	1 cut(s)	413
Hsp92II	CATG	5 cut(s)	61, 266, 349, 1183, 1234
HspAI	GCGC	1 cut(s)	413
KasI	GGCGCC	1 cut(s)	412
Ksp22I	TGATCA	2 cut(s)	100, 1003
Kzo9I	GATC	2 cut(s)	100, 1003
LmnI	GCTCC	4 cut(s)	399, 589, 875, 1120
Lsp1109I	GCAGC	3 cut(s)	311, 403, 724
LweI	GCATC	1 cut(s)	1072
MaeI	CTAG	3 cut(s)	399, 903, 1065
MaeII	ACGT	2 cut(s)	285, 486
MaeIII	GTNAC	2 cut(s)	1094, 1234
MalI	GATC	2 cut(s)	102, 1005
MboI	GATC	2 cut(s)	100, 1003
MboII	GAAGA	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	171
MluCI	AATT	9 cut(s)	234, 671, 690, 804, 925, 1124, 1131, 1171, 1213
Mly113I	GGCGCC	1 cut(s)	413
MlyI	GAGTC	2 cut(s)	150, 631
MmeI	TCCRAC	1 cut(s)	1251
MseI	TTAA	6 cut(s)	156, 468, 756, 830, 1134, 1170
MspCI	CTTAAG	1 cut(s)	755
Mva1269I	GAATGC	1 cut(s)	301
MwoI	GCNNNNNNNGC	2 cut(s)	419, 746
NarI	GGCGCC	1 cut(s)	413
NcoI	CCATGG	1 cut(s)	57
NdeII	GATC	2 cut(s)	100, 1003
NlaIII	CATG	5 cut(s)	61, 266, 349, 1183, 1234
NlaIV	GGNNCC	3 cut(s)	414, 492, 859
NmuCI	GTSAC	1 cut(s)	1094
PaqCI	CACCTGC	1 cut(s)	700
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	823
PkrI	GCNGC	3 cut(s)	301, 393, 739
PleI	GAGTC	2 cut(s)	149, 631
PluTI	GGCGCC	1 cut(s)	416
PpsI	GAGTC	2 cut(s)	149, 631
Ppu21I	YACGTR	1 cut(s)	286
PpuMI	RGGWCCY	1 cut(s)	491
PshBI	ATTAAT	1 cut(s)	1170
Psp5II	RGGWCCY	1 cut(s)	491
PspN4I	GGNNCC	3 cut(s)	414, 492, 859
PspPI	GGNCC	2 cut(s)	491, 662
PspPPI	RGGWCCY	1 cut(s)	491
PstI	CTGCAG	1 cut(s)	140
PstNI	CAGNNNCTG	2 cut(s)	144, 305
RsaI	GTAC	2 cut(s)	53, 684
RsaNI	GTAC	2 cut(s)	52, 683
SaqAI	TTAA	6 cut(s)	156, 468, 756, 830, 1134, 1170
SatI	GCNGC	3 cut(s)	300, 392, 738
Sau3AI	GATC	2 cut(s)	100, 1003
Sau96I	GGNCC	2 cut(s)	491, 662
SchI	GAGTC	2 cut(s)	150, 631
SduI	GDGCHC	1 cut(s)	171
SfaNI	GCATC	1 cut(s)	1072
SfcI	CTRYAG	2 cut(s)	136, 615
SfoI	GGCGCC	1 cut(s)	414
SinI	GGWCC	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	755
SmoI	CTYRAG	1 cut(s)	755
SnaBI	TACGTA	1 cut(s)	286
Sse9I	AATT	9 cut(s)	234, 671, 690, 804, 925, 1124, 1131, 1171, 1213
SspDI	GGCGCC	1 cut(s)	412
SspI	AATATT	1 cut(s)	898
SspMI	CTAG	3 cut(s)	399, 903, 1065
StyI	CCWWGG	2 cut(s)	57, 494
TaaI	ACNGT	6 cut(s)	180, 248, 466, 772, 940, 1240
TaiI	ACGT	2 cut(s)	288, 489
TaqI	TCGA	1 cut(s)	1199
TasI	AATT	9 cut(s)	234, 671, 690, 804, 925, 1124, 1131, 1171, 1213
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	823
Tru1I	TTAA	6 cut(s)	156, 468, 756, 830, 1134, 1170
Tru9I	TTAA	6 cut(s)	156, 468, 756, 830, 1134, 1170
TscAI	CASTG	4 cut(s)	12, 672, 775, 943
TseFI	GTSAC	1 cut(s)	1094
TseI	GCWGC	3 cut(s)	299, 391, 737
Tsp45I	GTSAC	1 cut(s)	1094
TspDTI	ATGAA	7 cut(s)	234, 354, 521, 621, 986, 1016, 1196
TspRI	CASTG	4 cut(s)	12, 672, 775, 943
Vha464I	CTTAAG	1 cut(s)	755
VpaK11BI	GGWCC	1 cut(s)	491
VspI	ATTAAT	1 cut(s)	1170
XapI	RAATTY	2 cut(s)	671, 1213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	943
XspI	CTAG	3 cut(s)	399, 903, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.