RchiOBHm_Chr7g0226671

Belongs to the adenylate kinase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
49982865 .. 49986960
4096 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20302

Sequence Viewer

Length: 903 bp
ATGGCTTGCCATGTCAATTTGGTTCCCCAATCCATGGCCACAGCGTCAGCTAAACCCAAAGCTCCTCCTCCTCCCGCCGCGTGTTCCATTTCAAAGCCATTCATCTCCGCAAAGCTTGTTCACTCGTCGCAATCCTCTTTCGTTTCCACCTTCTCTCCCTCTCGCCCTCAAACCCTAACTCCTCTCCGTTCCAGCAGAGCTATGACTGACCTGGCGGTGCGGTGTGCTTCTAAGGCTGAGCCGCTCAGAATTATGATATCCGGGGCGCCTGCTTCGGGTAAAGGCACGCAATGCGAGCTCATTACTCAGAAATATGATTTGGTACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGTGAAAATGGGAAGCGTGCAAGGGCGTACATGGACAAAGGACAATTGGTTCCAGATGAAATAGTTGTTATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCAAGAAAAAGGCTGGCTCTTGGATGGATACCCTAGGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCAGATCTTTTCATTCTTCTTGACGTTCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAGTATTCTCCTCCAGAGACCCCAGAGATCGCGGCAAGGCTCACCCAACGTTTTGATGATACAGAAGAAAAGGTGAAACTTCGACTGCACACTCATCATCAAAATGTGGAGGCAGTACTTTCATTATATGAAGACATAACCCTTAAGGTGGACGGGAGTGTTACCAAGGATGATGTGTTTGCCCAAATTGATGGCGCGCTGGCAAAGCTTCTTGAGAAAAAGCGGGCTACCACAGAATCTCTGGCAGCTTAG

Protein Analysis

300

Amino Acids

32.8

Weight (kDa)

7.69

Isoelectric Point (pI)

54.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 86 - 262 3.8e-49 Adenylate kinase
AAA_17 PF13207 88 - 206 3.2e-26 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 265
AccB7I CCANNNNNTGG 1 cut(s) 34
AccBSI CCGCTC 2 cut(s) 244, 353
AccII CGCG 3 cut(s) 80, 683, 848
AciI CCGC 9 cut(s) 75, 78, 108, 215, 220, 242, 353, 683, 874
AclI AACGTT 1 cut(s) 700
AclWI GGATC 1 cut(s) 617
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 539
AcuI CTGAAG 2 cut(s) 603, 671
AcyI GRCGYC 1 cut(s) 266
AfaI GTAC 3 cut(s) 324, 398, 768
AfiI CCNNNNNNNGG 4 cut(s) 34, 275, 632, 799
AflII CTTAAG 2 cut(s) 533, 794
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AloI GAACNNNNNNTCC 2 cut(s) 402, 434
AluBI AGCT 8 cut(s) 50, 62, 115, 200, 298, 513, 859, 899
AluI AGCT 8 cut(s) 50, 62, 115, 200, 298, 513, 859, 899
Alw21I GWGCWC 2 cut(s) 300, 515
Alw26I GTCTC 1 cut(s) 662
AlwI GGATC 1 cut(s) 617
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 332, 896
ApoI RAATTY 1 cut(s) 539
Asp700I GAANNNNTTC 1 cut(s) 588
AspA2I CCTAGG 1 cut(s) 506
AspLEI GCGC 3 cut(s) 268, 848, 850
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 3 cut(s) 457, 685, 736
AvrII CCTAGG 1 cut(s) 506
BalI TGGCCA 1 cut(s) 38
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 2 cut(s) 300, 515
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 2 cut(s) 300, 515
BbvI GCAGC 1 cut(s) 319
BccI CCATC 4 cut(s) 436, 491, 654, 836
BciT130I CCWGG 1 cut(s) 212
BciVI GTATCC 1 cut(s) 494
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 662
BfaI CTAG 1 cut(s) 507
BfoI RGCGCY 1 cut(s) 269
BfrI CTTAAG 2 cut(s) 533, 794
BfuI GTATCC 1 cut(s) 494
BglII AGATCT 2 cut(s) 556, 639
BisI GCNGC 5 cut(s) 78, 242, 333, 684, 897
BlnI CCTAGG 1 cut(s) 506
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 5 cut(s) 79, 243, 334, 685, 898
BmcAI AGTACT 1 cut(s) 768
Bme1390I CCNGG 2 cut(s) 212, 262
BmiI GGNNCC 3 cut(s) 24, 267, 420
BmrFI CCNGG 2 cut(s) 212, 262
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 789
BpmI CTGGAG 2 cut(s) 357, 648
Bpu1102I GCTNAGC 1 cut(s) 237
BpuEI CTTGAG 2 cut(s) 459, 884
BpuMI CCSGG 1 cut(s) 262
BsaHI GRCGYC 1 cut(s) 266
BsaI GGTCTC 1 cut(s) 662
BsaJI CCNNGG 4 cut(s) 33, 261, 506, 816
BsaXI ACNNNNNCTCC 4 cut(s) 139, 163, 169, 193
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 275, 632, 799
Bse1I ACTGG 1 cut(s) 637
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 4 cut(s) 33, 261, 506, 816
BseGI GGATG 2 cut(s) 502, 826
BseLI CCNNNNNNNGG 4 cut(s) 34, 275, 632, 799
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 3 cut(s) 228, 259, 320
BseNI ACTGG 1 cut(s) 637
BsePI GCGCGC 1 cut(s) 846
BseRI GAGGAG 5 cut(s) 54, 57, 60, 171, 651
BseXI GCAGC 1 cut(s) 319
BsgI GTGCAG 1 cut(s) 722
Bsh1236I CGCG 3 cut(s) 80, 683, 848
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 300, 515
BsiSI CCGG 1 cut(s) 261
BslI CCNNNNNNNGG 4 cut(s) 34, 275, 632, 799
BsmAI GTCTC 1 cut(s) 662
BsnI GGCC 1 cut(s) 38
Bso31I GGTCTC 1 cut(s) 662
Bsp1286I GDGCHC 2 cut(s) 300, 515
Bsp143I GATC 4 cut(s) 556, 622, 639, 678
Bsp1720I GCTNAGC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 9 cut(s) 75, 78, 108, 215, 220, 242, 353, 683, 874
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 3 cut(s) 229, 258, 319
BspFNI CGCG 3 cut(s) 80, 683, 848
BspLI GGNNCC 3 cut(s) 24, 267, 420
BspPI GGATC 1 cut(s) 617
BspT107I GGYRCC 1 cut(s) 265
BspTI CTTAAG 2 cut(s) 533, 794
BspTNI GGTCTC 1 cut(s) 662
BsrBI CCGCTC 2 cut(s) 244, 353
BsrDI GCAATG 1 cut(s) 296
BsrI ACTGG 1 cut(s) 637
BssECI CCNNGG 4 cut(s) 33, 261, 506, 816
BssHII GCGCGC 1 cut(s) 846
BssMI GATC 4 cut(s) 556, 622, 639, 678
BssNI GRCGYC 1 cut(s) 266
BssT1I CCWWGG 3 cut(s) 33, 506, 816
Bst2UI CCWGG 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 579
BstACI GRCGYC 1 cut(s) 266
BstAFI CTTAAG 2 cut(s) 533, 794
BstAPI GCANNNNNTGC 1 cut(s) 291
BstDEI CTNAG 6 cut(s) 231, 237, 245, 306, 347, 900
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 502, 826
BstFNI CGCG 3 cut(s) 80, 683, 848
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 3 cut(s) 268, 848, 850
BstKTI GATC 4 cut(s) 559, 625, 642, 681
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 4 cut(s) 556, 622, 639, 678
BstMWI GCNNNNNNNGC 5 cut(s) 233, 291, 295, 359, 856
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 210, 260
BstUI CGCG 3 cut(s) 80, 683, 848
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 3 cut(s) 556, 622, 639
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 3 cut(s) 556, 622, 639
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 1 cut(s) 38
BtgI CCRYGG 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 501
BtsCI GGATG 2 cut(s) 502, 826
CfoI GCGC 3 cut(s) 268, 848, 850
CseI GACGC 2 cut(s) 33, 443
Csp6I GTAC 3 cut(s) 323, 397, 767
CviAII CATG 4 cut(s) 11, 34, 326, 400
CviQI GTAC 3 cut(s) 323, 397, 767
DdeI CTNAG 6 cut(s) 231, 237, 245, 306, 347, 900
DinI GGCGCC 1 cut(s) 267
DpnI GATC 4 cut(s) 558, 624, 641, 680
DpnII GATC 4 cut(s) 556, 622, 639, 678
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
Ecl136II GAGCTC 2 cut(s) 298, 513
Eco130I CCWWGG 3 cut(s) 33, 506, 816
Eco24I GRGCYC 2 cut(s) 300, 515
Eco31I GGTCTC 1 cut(s) 662
Eco32I GATATC 1 cut(s) 258
Eco53kI GAGCTC 2 cut(s) 298, 513
Eco57I CTGAAG 2 cut(s) 603, 671
EcoICRI GAGCTC 2 cut(s) 298, 513
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 210
EcoRV GATATC 1 cut(s) 258
EcoT14I CCWWGG 3 cut(s) 33, 506, 816
EcoT38I GRGCYC 2 cut(s) 300, 515
EgeI GGCGCC 1 cut(s) 267
EheI GGCGCC 1 cut(s) 267
ErhI CCWWGG 3 cut(s) 33, 506, 816
FaeI CATG 4 cut(s) 14, 37, 329, 403
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FatI CATG 4 cut(s) 10, 33, 325, 399
FauI CCCGC 2 cut(s) 82, 867
Fnu4HI GCNGC 5 cut(s) 78, 242, 333, 684, 897
FokI GGATG 2 cut(s) 509, 833
FriOI GRGCYC 2 cut(s) 300, 515
Fsp4HI GCNGC 5 cut(s) 78, 242, 333, 684, 897
FspBI CTAG 1 cut(s) 507
GlaI GCGC 3 cut(s) 267, 847, 849
GluI GCNGC 5 cut(s) 78, 242, 333, 684, 897
GsuI CTGGAG 2 cut(s) 357, 648
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 1 cut(s) 38
HapII CCGG 1 cut(s) 261
HgaI GACGC 2 cut(s) 33, 443
HhaI GCGC 3 cut(s) 268, 848, 850
Hin1I GRCGYC 1 cut(s) 266
Hin1II CATG 4 cut(s) 14, 37, 329, 403
Hin6I GCGC 3 cut(s) 266, 846, 848
HinP1I GCGC 3 cut(s) 266, 846, 848
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HindIII AAGCTT 2 cut(s) 113, 857
HinfI GANTC 3 cut(s) 470, 589, 887
HpaII CCGG 1 cut(s) 261
HphI GGTGA 3 cut(s) 457, 685, 736
Hpy166II GTNNAC 3 cut(s) 121, 598, 802
Hpy188I TCNGA 3 cut(s) 248, 309, 651
Hpy188III TCNNGA 6 cut(s) 422, 476, 572, 581, 665, 863
Hpy8I GTNNAC 3 cut(s) 121, 598, 802
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 160, 609
HpyCH4IV ACGT 2 cut(s) 576, 700
HpyCH4V TGCA 3 cut(s) 362, 389, 739
HpyF10VI GCNNNNNNNGC 5 cut(s) 233, 291, 295, 359, 856
HpyF3I CTNAG 6 cut(s) 231, 237, 245, 306, 347, 900
HpySE526I ACGT 2 cut(s) 576, 700
Hsp92I GRCGYC 1 cut(s) 266
Hsp92II CATG 4 cut(s) 14, 37, 329, 403
HspAI GCGC 3 cut(s) 266, 846, 848
KasI GGCGCC 1 cut(s) 265
Kzo9I GATC 4 cut(s) 556, 622, 639, 678
LmnI GCTCC 2 cut(s) 67, 510
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 507
MaeII ACGT 2 cut(s) 576, 700
MaeIII GTNAC 2 cut(s) 628, 811
MalI GATC 4 cut(s) 558, 624, 641, 680
MbiI CCGCTC 2 cut(s) 244, 353
MboI GATC 4 cut(s) 556, 622, 639, 678
MboII GAAGA 5 cut(s) 560, 596, 624, 728, 794
MfeI CAATTG 2 cut(s) 413, 525
MflI RGATCY 3 cut(s) 556, 622, 639
MhlI GDGCHC 2 cut(s) 300, 515
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 7 cut(s) 16, 249, 357, 413, 525, 539, 837
MluNI TGGCCA 1 cut(s) 38
Mly113I GGCGCC 1 cut(s) 266
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 9 cut(s) 75, 78, 81, 145, 169, 177, 192, 672, 754
Mox20I TGGCCA 1 cut(s) 38
MroXI GAANNNNTTC 1 cut(s) 588
MscI TGGCCA 1 cut(s) 38
MseI TTAA 2 cut(s) 534, 795
MslI CAYNNNNRTG 1 cut(s) 753
Msp20I TGGCCA 1 cut(s) 38
MspCI CTTAAG 2 cut(s) 533, 794
MspI CCGG 1 cut(s) 261
MspR9I CCNGG 2 cut(s) 212, 262
MunI CAATTG 2 cut(s) 413, 525
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 3 cut(s) 80, 683, 848
MwoI GCNNNNNNNGC 5 cut(s) 233, 291, 295, 359, 856
NarI GGCGCC 1 cut(s) 266
NciI CCSGG 1 cut(s) 262
NcoI CCATGG 1 cut(s) 33
NdeII GATC 4 cut(s) 556, 622, 639, 678
NlaIII CATG 4 cut(s) 14, 37, 329, 403
NlaIV GGNNCC 3 cut(s) 24, 267, 420
NspI RCATGY 1 cut(s) 329
PauI GCGCGC 1 cut(s) 846
PciI ACATGT 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 3 cut(s) 470, 589, 887
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 5 cut(s) 79, 243, 334, 685, 898
PluTI GGCGCC 1 cut(s) 269
PscI ACATGT 1 cut(s) 325
Psp124BI GAGCTC 2 cut(s) 300, 515
Psp1406I AACGTT 1 cut(s) 700
Psp6I CCWGG 1 cut(s) 210
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 3 cut(s) 24, 267, 420
PsuI RGATCY 3 cut(s) 556, 622, 639
PteI GCGCGC 1 cut(s) 846
RsaI GTAC 3 cut(s) 324, 398, 768
RsaNI GTAC 3 cut(s) 323, 397, 767
RseI CAYNNNNRTG 1 cut(s) 753
SacI GAGCTC 2 cut(s) 300, 515
SaqAI TTAA 2 cut(s) 534, 795
SatI GCNGC 5 cut(s) 78, 242, 333, 684, 897
Sau3AI GATC 4 cut(s) 556, 622, 639, 678
ScaI AGTACT 1 cut(s) 768
ScrFI CCNGG 2 cut(s) 212, 262
SduI GDGCHC 2 cut(s) 300, 515
SfaNI GCATC 1 cut(s) 371
SfoI GGCGCC 1 cut(s) 267
SmiMI CAYNNNNRTG 1 cut(s) 753
SmlI CTYRAG 4 cut(s) 474, 533, 794, 863
SmoI CTYRAG 4 cut(s) 474, 533, 794, 863
Sse9I AATT 7 cut(s) 16, 249, 357, 413, 525, 539, 837
SsiI CCGC 9 cut(s) 75, 78, 108, 215, 220, 242, 353, 683, 874
SspDI GGCGCC 1 cut(s) 265
SspMI CTAG 1 cut(s) 507
SstI GAGCTC 2 cut(s) 300, 515
StyD4I CCNGG 2 cut(s) 210, 260
StyI CCWWGG 3 cut(s) 33, 506, 816
TaiI ACGT 2 cut(s) 579, 703
TaqI TCGA 2 cut(s) 549, 733
TasI AATT 7 cut(s) 16, 249, 357, 413, 525, 539, 837
TatI WGTACW 1 cut(s) 766
TauI GCSGC 3 cut(s) 80, 244, 686
TfiI GAWTC 3 cut(s) 470, 589, 887
Tru1I TTAA 2 cut(s) 534, 795
Tru9I TTAA 2 cut(s) 534, 795
TseI GCWGC 2 cut(s) 332, 896
TspDTI ATGAA 5 cut(s) 91, 441, 553, 762, 795
TspGWI ACGGA 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 34
Vha464I CTTAAG 2 cut(s) 533, 794
XapI RAATTY 1 cut(s) 539
XceI RCATGY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XmaJI CCTAGG 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.