Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

11869132 .. 11870168

Gene Structure 1037 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032182

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAATTTATACCATGGATTACATGACTACCACTTATGTCAAGCTTTTCTCACTACGAGAAGCAGATTAACTGAATTATGCTCCTCTACGCAGTATGATTTGATACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGTGAAAATGGGAAGCGTGCAAGGGCGTACATGGACAAAGGACAATTGGTTCCAGATGAAATAGTTGTTATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTACGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAATATCATTTGCCTATTAATTAATGACGCCGTAATCAGGCCACTACATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAACTGAAATTCCATTGTGGATAAAATGCCCCGATTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

180

Amino Acids

20.29

Weight (kDa)

4.85

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	30 - 135	2.8e-31	Adenylate kinase
AAA_17	PF13207	30 - 133	1.1e-16	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	134
AciI	CCGC	1 cut(s)	134
AclWI	GGATC	2 cut(s)	345, 398
AcsI	RAATTY	3 cut(s)	4, 320, 504
AcuI	CTGAAG	1 cut(s)	384
AcyI	GRCGYC	1 cut(s)	444
AfaI	GTAC	1 cut(s)	179
AfiI	CCNNNNNNNGG	2 cut(s)	413, 453
AflII	CTTAAG	1 cut(s)	314
AflIII	ACRYGT	1 cut(s)	106
AjuI	GAANNNNNNNTTGG	2 cut(s)	467, 499
AloI	GAACNNNNNNTCC	2 cut(s)	183, 215
AluBI	AGCT	2 cut(s)	44, 294
AluI	AGCT	2 cut(s)	44, 294
Alw21I	GWGCWC	1 cut(s)	296
AlwI	GGATC	2 cut(s)	345, 398
Ama87I	CYCGRG	1 cut(s)	255
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	1 cut(s)	113
ApoI	RAATTY	3 cut(s)	4, 320, 504
AseI	ATTAAT	2 cut(s)	434, 438
Asp700I	GAANNNNTTC	2 cut(s)	369, 492
AsuHPI	GGTGA	1 cut(s)	238
AvaI	CYCGRG	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	100
BccI	CCATC	2 cut(s)	217, 272
BceAI	ACGGC	1 cut(s)	431
BciVI	GTATCC	1 cut(s)	275
BfrI	CTTAAG	1 cut(s)	314
BfuI	GTATCC	1 cut(s)	275
BisI	GCNGC	1 cut(s)	114
BlsI	GCNGC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	255
BmiI	GGNNCC	1 cut(s)	201
BmsI	GCATC	1 cut(s)	152
BpmI	CTGGAG	2 cut(s)	138, 491
BsaHI	GRCGYC	1 cut(s)	444
BsaJI	CCNNGG	1 cut(s)	13
Bsc4I	CCNNNNNNNGG	2 cut(s)	413, 453
Bse1I	ACTGG	2 cut(s)	418, 474
BseDI	CCNNGG	1 cut(s)	13
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	2 cut(s)	413, 453
BseNI	ACTGG	2 cut(s)	418, 474
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	1 cut(s)	100
BshFI	GGCC	1 cut(s)	457
BsiHKAI	GWGCWC	1 cut(s)	296
BsiHKCI	CYCGRG	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	413, 453
BsnI	GGCC	1 cut(s)	457
BsoBI	CYCGRG	1 cut(s)	255
Bsp1286I	GDGCHC	1 cut(s)	296
Bsp143I	GATC	2 cut(s)	337, 403
Bsp19I	CCATGG	1 cut(s)	13
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	457
BspLI	GGNNCC	1 cut(s)	201
BspPI	GGATC	2 cut(s)	345, 398
BspTI	CTTAAG	1 cut(s)	314
BsrBI	CCGCTC	1 cut(s)	134
BsrI	ACTGG	2 cut(s)	418, 474
BssECI	CCNNGG	1 cut(s)	13
BssMI	GATC	2 cut(s)	337, 403
BssNI	GRCGYC	1 cut(s)	444
BssT1I	CCWWGG	1 cut(s)	13
Bst6I	CTCTTC	1 cut(s)	360
BstACI	GRCGYC	1 cut(s)	444
BstAFI	CTTAAG	1 cut(s)	314
BstC8I	GCNNGC	3 cut(s)	168, 269, 303
BstDEI	CTNAG	1 cut(s)	128
BstDSI	CCRYGG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	2 cut(s)	340, 406
BstMBI	GATC	2 cut(s)	337, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstNSI	RCATGY	1 cut(s)	110
BstV1I	GCAGC	1 cut(s)	100
BstX2I	RGATCY	2 cut(s)	337, 403
BstYI	RGATCY	2 cut(s)	337, 403
BsuI	GTATCC	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	457
BtgI	CCRYGG	1 cut(s)	13
BtgZI	GCGATG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	283
Cac8I	GCNNGC	3 cut(s)	168, 269, 303
CseI	GACGC	2 cut(s)	224, 452
Csp6I	GTAC	1 cut(s)	178
CviAII	CATG	5 cut(s)	14, 23, 107, 181, 464
CviJI	RGCY	8 cut(s)	44, 247, 267, 271, 294, 327, 334, 457
CviKI_1	RGCY	8 cut(s)	44, 247, 267, 271, 294, 327, 334, 457
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	2 cut(s)	339, 405
DpnII	GATC	2 cut(s)	337, 403
Eam1104I	CTCTTC	1 cut(s)	360
EarI	CTCTTC	1 cut(s)	360
Ecl136II	GAGCTC	1 cut(s)	294
Eco130I	CCWWGG	1 cut(s)	13
Eco24I	GRGCYC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	384
Eco88I	CYCGRG	1 cut(s)	255
EcoICRI	GAGCTC	1 cut(s)	294
EcoRI	GAATTC	1 cut(s)	320
EcoT14I	CCWWGG	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	296
ErhI	CCWWGG	1 cut(s)	13
FaeI	CATG	5 cut(s)	17, 26, 110, 184, 467
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	5 cut(s)	13, 22, 106, 180, 463
Fnu4HI	GCNGC	1 cut(s)	114
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	296
Fsp4HI	GCNGC	1 cut(s)	114
GluI	GCNGC	1 cut(s)	114
GsuI	CTGGAG	2 cut(s)	138, 491
HaeIII	GGCC	1 cut(s)	457
HapII	CCGG	1 cut(s)	335
HgaI	GACGC	2 cut(s)	224, 452
Hin1I	GRCGYC	1 cut(s)	444
Hin1II	CATG	5 cut(s)	17, 26, 110, 184, 467
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	42
HinfI	GANTC	2 cut(s)	251, 370
HpaII	CCGG	1 cut(s)	335
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	379
Hpy188III	TCNNGA	5 cut(s)	203, 255, 257, 353, 362
Hpy8I	GTNNAC	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	390
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	2 cut(s)	143, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	444
Hsp92II	CATG	5 cut(s)	17, 26, 110, 184, 467
Kzo9I	GATC	2 cut(s)	337, 403
LmnI	GCTCC	1 cut(s)	86
Lsp1109I	GCAGC	1 cut(s)	100
LweI	GCATC	1 cut(s)	152
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	409, 479
MalI	GATC	2 cut(s)	339, 405
MbiI	CCGCTC	1 cut(s)	134
MboI	GATC	2 cut(s)	337, 403
MboII	GAAGA	4 cut(s)	341, 377, 405, 500
MfeI	CAATTG	2 cut(s)	194, 306
MflI	RGATCY	2 cut(s)	337, 403
MhlI	GDGCHC	1 cut(s)	296
MluCI	AATT	8 cut(s)	4, 74, 138, 194, 306, 320, 435, 504
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	1 cut(s)	94
MroXI	GAANNNNTTC	2 cut(s)	369, 492
MseI	TTAA	4 cut(s)	68, 315, 434, 438
MspCI	CTTAAG	1 cut(s)	314
MspI	CCGG	1 cut(s)	335
MunI	CAATTG	2 cut(s)	194, 306
MwoI	GCNNNNNNNGC	1 cut(s)	140
NcoI	CCATGG	1 cut(s)	13
NdeII	GATC	2 cut(s)	337, 403
NlaIII	CATG	5 cut(s)	17, 26, 110, 184, 467
NlaIV	GGNNCC	1 cut(s)	201
NspI	RCATGY	1 cut(s)	110
PacI	TTAATTAA	1 cut(s)	438
PaeR7I	CTCGAG	1 cut(s)	255
PciI	ACATGT	1 cut(s)	106
PdmI	GAANNNNTTC	2 cut(s)	369, 492
PfeI	GAWTC	2 cut(s)	251, 370
PkrI	GCNGC	1 cut(s)	115
PscI	ACATGT	1 cut(s)	106
PshBI	ATTAAT	2 cut(s)	434, 438
Psp124BI	GAGCTC	1 cut(s)	296
PspN4I	GGNNCC	1 cut(s)	201
PsuI	RGATCY	2 cut(s)	337, 403
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
SacI	GAGCTC	1 cut(s)	296
SaqAI	TTAA	4 cut(s)	68, 315, 434, 438
SatI	GCNGC	1 cut(s)	114
Sau3AI	GATC	2 cut(s)	337, 403
SduI	GDGCHC	1 cut(s)	296
SetI	ASST	4 cut(s)	46, 296, 360, 401
SfaNI	GCATC	1 cut(s)	152
Sfr274I	CTCGAG	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	255
SmlI	CTYRAG	2 cut(s)	255, 314
SmoI	CTYRAG	2 cut(s)	255, 314
Sse9I	AATT	8 cut(s)	4, 74, 138, 194, 306, 320, 435, 504
SsiI	CCGC	1 cut(s)	134
SstI	GAGCTC	1 cut(s)	296
StyI	CCWWGG	1 cut(s)	13
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	2 cut(s)	256, 330
TasI	AATT	8 cut(s)	4, 74, 138, 194, 306, 320, 435, 504
TfiI	GAWTC	2 cut(s)	251, 370
Tru1I	TTAA	4 cut(s)	68, 315, 434, 438
Tru9I	TTAA	4 cut(s)	68, 315, 434, 438
TseI	GCWGC	1 cut(s)	113
TspDTI	ATGAA	4 cut(s)	17, 222, 334, 480
Vha464I	CTTAAG	1 cut(s)	314
VspI	ATTAAT	2 cut(s)	434, 438
XapI	RAATTY	3 cut(s)	4, 320, 504
XceI	RCATGY	1 cut(s)	110
XhoI	CTCGAG	1 cut(s)	255
XmnI	GAANNNNTTC	2 cut(s)	369, 492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.