Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

60621644 .. 60627224

Gene Structure 5581 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009936

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTTTAAATACATAAGGTTGGAGAATAAGCAGTCGCCACATGCCATCTCCGCCAAATCCACCGCCATACCAACGGAGAAAACGTGCTCCAATGGTCAAAATCCCACTCAATATGATTTGATACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGTGAAAATGGGAAGCGTGCAAGGGCGTACATGGACAAAGGACAATTGGTTCCAGATGAAATAGTTGTTATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTACGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTAATAGTTGGAAGAAGGTTAGATGCTGTTACTGGAAAGATCATTTGCCTATTAATTAATGACGCCGTAATCAGGCCACTACATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAACTGAAATTCCATTGTGGATAAAATGCCCCGATTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

178

Amino Acids

19.82

Weight (kDa)

5.29

Isoelectric Point (pI)

44.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	36 - 126	2e-26	Adenylate kinase
AAA_17	PF13207	37 - 126	2.3e-13	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	152
AciI	CCGC	3 cut(s)	51, 63, 152
AclWI	GGATC	1 cut(s)	363
AcsI	RAATTY	2 cut(s)	338, 498
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	447
AflII	CTTAAG	1 cut(s)	332
AflIII	ACRYGT	1 cut(s)	124
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AloI	GAACNNNNNNTCC	2 cut(s)	201, 233
AluBI	AGCT	1 cut(s)	312
AluI	AGCT	1 cut(s)	312
Alw21I	GWGCWC	2 cut(s)	89, 314
AlwI	GGATC	1 cut(s)	363
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	1 cut(s)	449
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	2 cut(s)	338, 498
AseI	ATTAAT	2 cut(s)	428, 432
Asp700I	GAANNNNTTC	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	256
AvaI	CYCGRG	1 cut(s)	273
BanII	GRGCYC	1 cut(s)	314
Bbv12I	GWGCWC	2 cut(s)	89, 314
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	3 cut(s)	53, 235, 290
BceAI	ACGGC	1 cut(s)	425
BciVI	GTATCC	1 cut(s)	293
BfrI	CTTAAG	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	293
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	219
BmsI	GCATC	2 cut(s)	170, 388
BpmI	CTGGAG	2 cut(s)	156, 485
BsaHI	GRCGYC	1 cut(s)	438
BsaXI	ACNNNNNCTCC	2 cut(s)	68, 98
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse1I	ACTGG	2 cut(s)	412, 468
BseGI	GGATG	1 cut(s)	301
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	412, 468
BseXI	GCAGC	1 cut(s)	118
BshFI	GGCC	1 cut(s)	451
BsiHKAI	GWGCWC	2 cut(s)	89, 314
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	1 cut(s)	353
BslI	CCNNNNNNNGG	1 cut(s)	447
BsnI	GGCC	1 cut(s)	451
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	89, 314
Bsp143I	GATC	2 cut(s)	355, 414
BspACI	CCGC	3 cut(s)	51, 63, 152
BspANI	GGCC	1 cut(s)	451
BspLI	GGNNCC	1 cut(s)	219
BspPI	GGATC	1 cut(s)	363
BspTI	CTTAAG	1 cut(s)	332
BsrBI	CCGCTC	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	412, 468
BssMI	GATC	2 cut(s)	355, 414
BssNI	GRCGYC	1 cut(s)	438
BstACI	GRCGYC	1 cut(s)	438
BstAFI	CTTAAG	1 cut(s)	332
BstC8I	GCNNGC	3 cut(s)	186, 287, 321
BstDEI	CTNAG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	301
BstKTI	GATC	2 cut(s)	358, 417
BstMBI	GATC	2 cut(s)	355, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	50, 158
BstNSI	RCATGY	2 cut(s)	44, 128
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	451
BtgZI	GCGATG	1 cut(s)	300
BtsCI	GGATG	1 cut(s)	301
Cac8I	GCNNGC	3 cut(s)	186, 287, 321
CseI	GACGC	2 cut(s)	242, 446
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	4 cut(s)	41, 125, 199, 458
CviJI	RGCY	7 cut(s)	265, 285, 289, 312, 345, 352, 451
CviKI_1	RGCY	7 cut(s)	265, 285, 289, 312, 345, 352, 451
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	146
DpnI	GATC	2 cut(s)	357, 416
DpnII	GATC	2 cut(s)	355, 414
DraI	TTTAAA	1 cut(s)	7
EciI	GGCGGA	1 cut(s)	40
Ecl136II	GAGCTC	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	314
Eco53kI	GAGCTC	1 cut(s)	312
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	4 cut(s)	44, 128, 202, 461
FaiI	YATR	8 cut(s)	14, 42, 68, 114, 126, 200, 239, 459
FatI	CATG	4 cut(s)	40, 124, 198, 457
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	308
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	1 cut(s)	132
GluI	GCNGC	1 cut(s)	132
GsuI	CTGGAG	2 cut(s)	156, 485
HaeIII	GGCC	1 cut(s)	451
HapII	CCGG	1 cut(s)	353
HgaI	GACGC	2 cut(s)	242, 446
Hin1I	GRCGYC	1 cut(s)	438
Hin1II	CATG	4 cut(s)	44, 128, 202, 461
HinfI	GANTC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	353
HphI	GGTGA	1 cut(s)	256
Hpy188III	TCNNGA	4 cut(s)	221, 273, 275, 371
HpyAV	CCTTC	1 cut(s)	384
HpyCH4IV	ACGT	2 cut(s)	83, 375
HpyCH4V	TGCA	2 cut(s)	161, 188
HpyF10VI	GCNNNNNNNGC	2 cut(s)	50, 158
HpyF3I	CTNAG	1 cut(s)	146
HpySE526I	ACGT	2 cut(s)	83, 375
Hsp92I	GRCGYC	1 cut(s)	438
Hsp92II	CATG	4 cut(s)	44, 128, 202, 461
Kzo9I	GATC	2 cut(s)	355, 414
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	9 cut(s)	120, 150, 234, 271, 279, 366, 393, 433, 449
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	2 cut(s)	170, 388
MaeII	ACGT	2 cut(s)	83, 375
MaeIII	GTNAC	2 cut(s)	403, 473
MalI	GATC	2 cut(s)	357, 416
MbiI	CCGCTC	1 cut(s)	152
MboI	GATC	2 cut(s)	355, 414
MboII	GAAGA	3 cut(s)	359, 399, 494
MfeI	CAATTG	2 cut(s)	212, 324
MflI	RGATCY	1 cut(s)	355
MhlI	GDGCHC	2 cut(s)	89, 314
MluCI	AATT	6 cut(s)	156, 212, 324, 338, 429, 498
MmeI	TCCRAC	1 cut(s)	364
MroXI	GAANNNNTTC	1 cut(s)	486
MseI	TTAA	4 cut(s)	6, 333, 428, 432
MspCI	CTTAAG	1 cut(s)	332
MspI	CCGG	1 cut(s)	353
MunI	CAATTG	2 cut(s)	212, 324
MwoI	GCNNNNNNNGC	2 cut(s)	50, 158
NdeII	GATC	2 cut(s)	355, 414
NlaIII	CATG	4 cut(s)	44, 128, 202, 461
NlaIV	GGNNCC	1 cut(s)	219
NspI	RCATGY	2 cut(s)	44, 128
PacI	TTAATTAA	1 cut(s)	432
PaeR7I	CTCGAG	1 cut(s)	273
PciI	ACATGT	1 cut(s)	124
PcsI	WCGNNNNNNNCGW	1 cut(s)	80
PdmI	GAANNNNTTC	1 cut(s)	486
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	133
PscI	ACATGT	1 cut(s)	124
PshBI	ATTAAT	2 cut(s)	428, 432
Psp124BI	GAGCTC	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	219
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	4 cut(s)	6, 333, 428, 432
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	2 cut(s)	355, 414
SduI	GDGCHC	2 cut(s)	89, 314
SetI	ASST	5 cut(s)	20, 86, 314, 378, 395
SfaNI	GCATC	2 cut(s)	170, 388
Sfr274I	CTCGAG	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	273
SmlI	CTYRAG	2 cut(s)	273, 332
SmoI	CTYRAG	2 cut(s)	273, 332
Sse9I	AATT	6 cut(s)	156, 212, 324, 338, 429, 498
SsiI	CCGC	3 cut(s)	51, 63, 152
SstI	GAGCTC	1 cut(s)	314
TaiI	ACGT	2 cut(s)	86, 378
TaqI	TCGA	2 cut(s)	274, 348
TasI	AATT	6 cut(s)	156, 212, 324, 338, 429, 498
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	4 cut(s)	6, 333, 428, 432
Tru9I	TTAA	4 cut(s)	6, 333, 428, 432
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	3 cut(s)	240, 352, 474
TspGWI	ACGGA	1 cut(s)	89
Vha464I	CTTAAG	1 cut(s)	332
VspI	ATTAAT	2 cut(s)	428, 432
XapI	RAATTY	2 cut(s)	338, 498
XceI	RCATGY	2 cut(s)	44, 128
XhoI	CTCGAG	1 cut(s)	273
XmnI	GAANNNNTTC	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.