Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

52186984 .. 52190636

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG406300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCTTGCCATGTCAATTTGGTTCCCCAATCCATGGCCACAGCGTCAGCTAAACCCAAAGCTCCTCCTCCTCCCGCCGCGTGTTCCATTTCAAAGCCATTCATCTCCGCAAAGCTTGTTCACTCGTCGCAATCCTCTTTCGTTTCCACCTTCTCTCCCTCTCGCCCTCAAACCCTAACTCCTCTCCGTTCCAGCAGAGCTATGACTGACCTGTATGATTTGGTACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGTGTGAAAATGGGAAGCGTGCAAGGGCGTACATGGACAAAGGACAATTGGTTCCAGATGAAATAGTTGTTATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTAGGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGAAGAGACTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAATATTCTCCTCCAGAGACCCCAGAGATCGCGGCAAGGCTCACCCAACGTTTTGATGATACAGAAGAAAAGGTGAAACTTCGACTGCACACTCATCATCAAAACGTGGAGGCAGTACTTTCATTATATGAAGACATAACCTGTAAGGTGGACGGGAGTGTTACCAAGGATGATGTGTTTGCCCAAATTGATGGCGCGCTGACAAAGCTTCTTGAGAAAAAGCGGGCTACCACAGAATCTCTGGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

267

Amino Acids

29.45

Weight (kDa)

6.66

Isoelectric Point (pI)

57.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	66 - 229	2.4e-38	Adenylate kinase
AAA_17	PF13207	71 - 173	5.7e-17	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	34
AccBSI	CCGCTC	1 cut(s)	254
AccII	CGCG	3 cut(s)	80, 584, 749
AciI	CCGC	6 cut(s)	75, 78, 108, 254, 584, 775
AclI	AACGTT	1 cut(s)	601
AclWI	GGATC	2 cut(s)	465, 518
AcoI	YGGCCR	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	504
AfaI	GTAC	3 cut(s)	225, 299, 669
AfiI	CCNNNNNNNGG	2 cut(s)	34, 533
AflII	CTTAAG	1 cut(s)	434
AflIII	ACRYGT	1 cut(s)	226
AgsI	TTSAA	1 cut(s)	93
AloI	GAACNNNNNNTCC	2 cut(s)	303, 335
AluBI	AGCT	7 cut(s)	50, 62, 115, 200, 414, 760, 800
AluI	AGCT	7 cut(s)	50, 62, 115, 200, 414, 760, 800
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	2 cut(s)	482, 563
AlwI	GGATC	2 cut(s)	465, 518
Ama87I	CYCGRG	1 cut(s)	375
AoxI	GGCC	1 cut(s)	36
ApeKI	GCWGC	2 cut(s)	233, 797
ApoI	RAATTY	1 cut(s)	440
AspA2I	CCTAGG	1 cut(s)	407
AspLEI	GCGC	2 cut(s)	749, 751
AsuHPI	GGTGA	3 cut(s)	358, 586, 637
AvaI	CYCGRG	1 cut(s)	375
AvrII	CCTAGG	1 cut(s)	407
BalI	TGGCCA	1 cut(s)	38
BanII	GRGCYC	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	690
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	220
BccI	CCATC	4 cut(s)	337, 392, 555, 737
BciVI	GTATCC	1 cut(s)	395
BcoDI	GTCTC	2 cut(s)	482, 563
BfaI	CTAG	1 cut(s)	408
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	540
BisI	GCNGC	4 cut(s)	78, 234, 585, 798
BlnI	CCTAGG	1 cut(s)	407
BlsI	GCNGC	4 cut(s)	79, 235, 586, 799
BmcAI	AGTACT	1 cut(s)	669
BmeT110I	CYCGRG	1 cut(s)	375
BmiI	GGNNCC	2 cut(s)	24, 321
BmsI	GCATC	1 cut(s)	272
BpiI	GAAGAC	1 cut(s)	690
BpmI	CTGGAG	2 cut(s)	258, 549
BpuEI	CTTGAG	1 cut(s)	785
BsaI	GGTCTC	1 cut(s)	563
BsaJI	CCNNGG	3 cut(s)	33, 407, 717
BsaXI	ACNNNNNCTCC	4 cut(s)	139, 163, 169, 193
Bsc4I	CCNNNNNNNGG	2 cut(s)	34, 533
Bse1I	ACTGG	1 cut(s)	538
BseDI	CCNNGG	3 cut(s)	33, 407, 717
BseGI	GGATG	2 cut(s)	403, 727
BseLI	CCNNNNNNNGG	2 cut(s)	34, 533
BseNI	ACTGG	1 cut(s)	538
BsePI	GCGCGC	1 cut(s)	747
BseRI	GAGGAG	5 cut(s)	54, 57, 60, 171, 552
BseXI	GCAGC	1 cut(s)	220
BsgI	GTGCAG	1 cut(s)	623
Bsh1236I	CGCG	3 cut(s)	80, 584, 749
BshFI	GGCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	416
BsiHKCI	CYCGRG	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	34, 533
BsmAI	GTCTC	2 cut(s)	482, 563
BsnI	GGCC	1 cut(s)	38
Bso31I	GGTCTC	1 cut(s)	563
BsoBI	CYCGRG	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	4 cut(s)	457, 523, 540, 579
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	6 cut(s)	75, 78, 108, 254, 584, 775
BspANI	GGCC	1 cut(s)	38
BspFNI	CGCG	3 cut(s)	80, 584, 749
BspLI	GGNNCC	2 cut(s)	24, 321
BspPI	GGATC	2 cut(s)	465, 518
BspTI	CTTAAG	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	563
BsrBI	CCGCTC	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	538
BssECI	CCNNGG	3 cut(s)	33, 407, 717
BssHII	GCGCGC	1 cut(s)	747
BssMI	GATC	4 cut(s)	457, 523, 540, 579
BssT1I	CCWWGG	3 cut(s)	33, 407, 717
Bst6I	CTCTTC	1 cut(s)	480
BstAFI	CTTAAG	1 cut(s)	434
BstC8I	GCNNGC	6 cut(s)	7, 288, 389, 423, 749, 777
BstDEI	CTNAG	2 cut(s)	248, 801
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	2 cut(s)	403, 727
BstFNI	CGCG	3 cut(s)	80, 584, 749
BstHHI	GCGC	2 cut(s)	749, 751
BstKTI	GATC	4 cut(s)	460, 526, 543, 582
BstMAI	GTCTC	2 cut(s)	482, 563
BstMBI	GATC	4 cut(s)	457, 523, 540, 579
BstMWI	GCNNNNNNNGC	2 cut(s)	260, 757
BstNSI	RCATGY	1 cut(s)	230
BstUI	CGCG	3 cut(s)	80, 584, 749
BstV1I	GCAGC	1 cut(s)	220
BstV2I	GAAGAC	1 cut(s)	690
BstX2I	RGATCY	3 cut(s)	457, 523, 540
BstXI	CCANNNNNNTGG	1 cut(s)	743
BstYI	RGATCY	3 cut(s)	457, 523, 540
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	38
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	1 cut(s)	402
BtsCI	GGATG	2 cut(s)	403, 727
Cac8I	GCNNGC	6 cut(s)	7, 288, 389, 423, 749, 777
CfoI	GCGC	2 cut(s)	749, 751
CseI	GACGC	2 cut(s)	33, 344
Csp6I	GTAC	3 cut(s)	224, 298, 668
CviAII	CATG	4 cut(s)	11, 34, 227, 301
CviQI	GTAC	3 cut(s)	224, 298, 668
DdeI	CTNAG	2 cut(s)	248, 801
DpnI	GATC	4 cut(s)	459, 525, 542, 581
DpnII	GATC	4 cut(s)	457, 523, 540, 579
EaeI	YGGCCR	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	480
EarI	CTCTTC	1 cut(s)	480
Ecl136II	GAGCTC	1 cut(s)	414
Eco130I	CCWWGG	3 cut(s)	33, 407, 717
Eco24I	GRGCYC	1 cut(s)	416
Eco31I	GGTCTC	1 cut(s)	563
Eco53kI	GAGCTC	1 cut(s)	414
Eco57I	CTGAAG	1 cut(s)	504
Eco88I	CYCGRG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	414
EcoRI	GAATTC	1 cut(s)	440
EcoT14I	CCWWGG	3 cut(s)	33, 407, 717
EcoT38I	GRGCYC	1 cut(s)	416
ErhI	CCWWGG	3 cut(s)	33, 407, 717
FaeI	CATG	4 cut(s)	14, 37, 230, 304
FalI	AAGNNNNNCTT	2 cut(s)	477, 509
FatI	CATG	4 cut(s)	10, 33, 226, 300
FauI	CCCGC	2 cut(s)	82, 768
Fnu4HI	GCNGC	4 cut(s)	78, 234, 585, 798
FokI	GGATG	2 cut(s)	410, 734
FriOI	GRGCYC	1 cut(s)	416
Fsp4HI	GCNGC	4 cut(s)	78, 234, 585, 798
FspBI	CTAG	1 cut(s)	408
GlaI	GCGC	2 cut(s)	748, 750
GluI	GCNGC	4 cut(s)	78, 234, 585, 798
GsuI	CTGGAG	2 cut(s)	258, 549
HaeIII	GGCC	1 cut(s)	38
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	2 cut(s)	33, 344
HhaI	GCGC	2 cut(s)	749, 751
Hin1II	CATG	4 cut(s)	14, 37, 230, 304
Hin6I	GCGC	2 cut(s)	747, 749
HinP1I	GCGC	2 cut(s)	747, 749
HincII	GTYRAC	1 cut(s)	499
HindII	GTYRAC	1 cut(s)	499
HindIII	AAGCTT	2 cut(s)	113, 758
HinfI	GANTC	3 cut(s)	371, 490, 788
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	3 cut(s)	358, 586, 637
Hpy166II	GTNNAC	3 cut(s)	121, 499, 703
Hpy188I	TCNGA	1 cut(s)	552
Hpy188III	TCNNGA	7 cut(s)	323, 375, 377, 473, 482, 566, 764
Hpy8I	GTNNAC	3 cut(s)	121, 499, 703
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	160, 510
HpyCH4IV	ACGT	3 cut(s)	477, 601, 657
HpyCH4V	TGCA	3 cut(s)	263, 290, 640
HpyF10VI	GCNNNNNNNGC	2 cut(s)	260, 757
HpyF3I	CTNAG	2 cut(s)	248, 801
HpySE526I	ACGT	3 cut(s)	477, 601, 657
Hsp92II	CATG	4 cut(s)	14, 37, 230, 304
HspAI	GCGC	2 cut(s)	747, 749
Kzo9I	GATC	4 cut(s)	457, 523, 540, 579
LmnI	GCTCC	2 cut(s)	67, 411
Lsp1109I	GCAGC	1 cut(s)	220
LweI	GCATC	1 cut(s)	272
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	3 cut(s)	477, 601, 657
MaeIII	GTNAC	2 cut(s)	529, 712
MalI	GATC	4 cut(s)	459, 525, 542, 581
MbiI	CCGCTC	1 cut(s)	254
MboI	GATC	4 cut(s)	457, 523, 540, 579
MboII	GAAGA	5 cut(s)	461, 497, 525, 629, 695
MfeI	CAATTG	2 cut(s)	314, 426
MflI	RGATCY	3 cut(s)	457, 523, 540
MhlI	GDGCHC	1 cut(s)	416
MlsI	TGGCCA	1 cut(s)	38
MluCI	AATT	6 cut(s)	16, 258, 314, 426, 440, 738
MluNI	TGGCCA	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	490
MnlI	CCTC	9 cut(s)	75, 78, 81, 145, 169, 177, 192, 573, 655
Mox20I	TGGCCA	1 cut(s)	38
MscI	TGGCCA	1 cut(s)	38
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	268
Msp20I	TGGCCA	1 cut(s)	38
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	1 cut(s)	455
MunI	CAATTG	2 cut(s)	314, 426
MvnI	CGCG	3 cut(s)	80, 584, 749
MwoI	GCNNNNNNNGC	2 cut(s)	260, 757
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	457, 523, 540, 579
NlaIII	CATG	4 cut(s)	14, 37, 230, 304
NlaIV	GGNNCC	2 cut(s)	24, 321
NspI	RCATGY	1 cut(s)	230
PaeR7I	CTCGAG	1 cut(s)	375
PauI	GCGCGC	1 cut(s)	747
PciI	ACATGT	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	371, 788
PflMI	CCANNNNNTGG	1 cut(s)	34
PkrI	GCNGC	4 cut(s)	79, 235, 586, 799
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PscI	ACATGT	1 cut(s)	226
Psp124BI	GAGCTC	1 cut(s)	416
Psp1406I	AACGTT	1 cut(s)	601
PspN4I	GGNNCC	2 cut(s)	24, 321
PsuI	RGATCY	3 cut(s)	457, 523, 540
PteI	GCGCGC	1 cut(s)	747
RsaI	GTAC	3 cut(s)	225, 299, 669
RsaNI	GTAC	3 cut(s)	224, 298, 668
RseI	CAYNNNNRTG	1 cut(s)	268
SacI	GAGCTC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	4 cut(s)	78, 234, 585, 798
Sau3AI	GATC	4 cut(s)	457, 523, 540, 579
ScaI	AGTACT	1 cut(s)	669
SchI	GAGTC	1 cut(s)	484
SduI	GDGCHC	1 cut(s)	416
SfaNI	GCATC	1 cut(s)	272
Sfr274I	CTCGAG	1 cut(s)	375
SlaI	CTCGAG	1 cut(s)	375
SmiMI	CAYNNNNRTG	1 cut(s)	268
SmlI	CTYRAG	3 cut(s)	375, 434, 764
SmoI	CTYRAG	3 cut(s)	375, 434, 764
Sse9I	AATT	6 cut(s)	16, 258, 314, 426, 440, 738
SsiI	CCGC	6 cut(s)	75, 78, 108, 254, 584, 775
SspI	AATATT	1 cut(s)	557
SspMI	CTAG	1 cut(s)	408
SstI	GAGCTC	1 cut(s)	416
StyI	CCWWGG	3 cut(s)	33, 407, 717
TaiI	ACGT	3 cut(s)	480, 604, 660
TaqI	TCGA	3 cut(s)	376, 450, 634
TasI	AATT	6 cut(s)	16, 258, 314, 426, 440, 738
TatI	WGTACW	1 cut(s)	667
TauI	GCSGC	2 cut(s)	80, 587
TfiI	GAWTC	2 cut(s)	371, 788
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TseI	GCWGC	2 cut(s)	233, 797
TspDTI	ATGAA	5 cut(s)	91, 342, 454, 663, 696
TspGWI	ACGGA	1 cut(s)	176
Van91I	CCANNNNNTGG	1 cut(s)	34
Vha464I	CTTAAG	1 cut(s)	434
XapI	RAATTY	1 cut(s)	440
XceI	RCATGY	1 cut(s)	230
XcmI	CCANNNNNNNNNTGG	1 cut(s)	790
XhoI	CTCGAG	1 cut(s)	375
XmaJI	CCTAGG	1 cut(s)	407
XspI	CTAG	1 cut(s)	408
ZrmI	AGTACT	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.