Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

5273819 .. 5277905

Gene Structure 4087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG027300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTAGGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCAGATCTTTTCATTCTTCTTGACGTAAAGATTCTTGTTGACAGAGTATTCGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAGTATTCTCCTCCAGAGACCCCAGAGATCGCGGCAAGGCTCACCCAACGTTTTGATGATACAGAAGAAAAGGCAGAGACCATTGTGAGTTTATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGATTGAAGTCCATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

115

Amino Acids

13.35

Weight (kDa)

5.51

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	1 - 102	4e-10	Adenylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	236
AciI	CCGC	1 cut(s)	236
AclI	AACGTT	1 cut(s)	253
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	224
AfiI	CCNNNNNNNGG	1 cut(s)	185
AflII	CTTAAG	1 cut(s)	92
AgsI	TTSAA	2 cut(s)	302, 337
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	2 cut(s)	215, 275
AlwI	GGATC	1 cut(s)	170
Ama87I	CYCGRG	1 cut(s)	33
ApoI	RAATTY	1 cut(s)	98
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspA2I	CCTAGG	1 cut(s)	65
AsuHPI	GGTGA	3 cut(s)	16, 238, 323
AvaI	CYCGRG	1 cut(s)	33
AvrII	CCTAGG	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BccI	CCATC	2 cut(s)	50, 207
BciVI	GTATCC	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	215, 275
BfaI	CTAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	53
BglII	AGATCT	2 cut(s)	115, 192
BisI	GCNGC	1 cut(s)	237
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	201
Bsa29I	ATCGAT	1 cut(s)	331
BsaI	GGTCTC	2 cut(s)	215, 275
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	1 cut(s)	185
Bse1I	ACTGG	1 cut(s)	190
BseCI	ATCGAT	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	1 cut(s)	185
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	204
Bsh1236I	CGCG	1 cut(s)	236
BshVI	ATCGAT	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	33
BslI	CCNNNNNNNGG	1 cut(s)	185
BsmAI	GTCTC	2 cut(s)	215, 275
Bso31I	GGTCTC	2 cut(s)	215, 275
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	115, 175, 192, 231
BspACI	CCGC	1 cut(s)	236
BspDI	ATCGAT	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	236
BspPI	GGATC	1 cut(s)	170
BspTI	CTTAAG	1 cut(s)	92
BspTNI	GGTCTC	2 cut(s)	215, 275
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	4 cut(s)	115, 175, 192, 231
BssT1I	CCWWGG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	297
BstAFI	CTTAAG	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	47, 81
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	236
BstKTI	GATC	4 cut(s)	118, 178, 195, 234
BstMAI	GTCTC	2 cut(s)	215, 275
BstMBI	GATC	4 cut(s)	115, 175, 192, 231
BstUI	CGCG	1 cut(s)	236
BstX2I	RGATCY	3 cut(s)	115, 175, 192
BstYI	RGATCY	3 cut(s)	115, 175, 192
Bsu15I	ATCGAT	1 cut(s)	331
BsuI	GTATCC	1 cut(s)	53
BsuTUI	ATCGAT	1 cut(s)	331
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	47, 81
ClaI	ATCGAT	1 cut(s)	331
CseI	GACGC	1 cut(s)	2
CviJI	RGCY	7 cut(s)	25, 45, 49, 72, 105, 112, 244
CviKI_1	RGCY	7 cut(s)	25, 45, 49, 72, 105, 112, 244
DpnI	GATC	4 cut(s)	117, 177, 194, 233
DpnII	GATC	4 cut(s)	115, 175, 192, 231
Eam1104I	CTCTTC	1 cut(s)	297
EarI	CTCTTC	1 cut(s)	297
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	2 cut(s)	215, 275
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	65
FaiI	YATR	2 cut(s)	344, 346
FauNDI	CATATG	1 cut(s)	344
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	201
HgaI	GACGC	1 cut(s)	2
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	3 cut(s)	29, 142, 328
HphI	GGTGA	3 cut(s)	16, 238, 323
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	2 cut(s)	164, 204
Hpy188III	TCNNGA	4 cut(s)	33, 35, 131, 218
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	1 cut(s)	162
HpyCH4IV	ACGT	2 cut(s)	135, 253
HpySE526I	ACGT	2 cut(s)	135, 253
Kzo9I	GATC	4 cut(s)	115, 175, 192, 231
LmnI	GCTCC	1 cut(s)	69
LpnPI	CCDG	7 cut(s)	31, 39, 126, 171, 192, 231, 240
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	2 cut(s)	135, 253
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	4 cut(s)	117, 177, 194, 233
MboI	GATC	4 cut(s)	115, 175, 192, 231
MboII	GAAGA	5 cut(s)	119, 177, 281, 314, 337
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	3 cut(s)	115, 175, 192
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	2 cut(s)	84, 98
MnlI	CCTC	3 cut(s)	225, 298, 302
MseI	TTAA	1 cut(s)	93
MspCI	CTTAAG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	236
NdeI	CATATG	1 cut(s)	344
NdeII	GATC	4 cut(s)	115, 175, 192, 231
PaeR7I	CTCGAG	1 cut(s)	33
PfeI	GAWTC	3 cut(s)	29, 142, 328
PkrI	GCNGC	1 cut(s)	238
Psp124BI	GAGCTC	1 cut(s)	74
Psp1406I	AACGTT	1 cut(s)	253
PsuI	RGATCY	3 cut(s)	115, 175, 192
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	4 cut(s)	115, 175, 192, 231
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	5 cut(s)	74, 138, 173, 256, 313
Sfr274I	CTCGAG	1 cut(s)	33
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	33, 92
SmoI	CTYRAG	2 cut(s)	33, 92
Sse9I	AATT	2 cut(s)	84, 98
SsiI	CCGC	1 cut(s)	236
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	65
TaiI	ACGT	2 cut(s)	138, 256
TaqI	TCGA	3 cut(s)	34, 108, 331
TasI	AATT	2 cut(s)	84, 98
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	3 cut(s)	29, 142, 328
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TspDTI	ATGAA	1 cut(s)	112
Vha464I	CTTAAG	1 cut(s)	92
XapI	RAATTY	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	33
XmaJI	CCTAGG	1 cut(s)	65
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.