Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

28023340 .. 28026727

Gene Structure 3388 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1217400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGCCATTGTTTACTTATTATGGTTTAGTGCATGTCGCTGCTGGAGATTTACTTGGAGCGGAAATTGCATCTGGGAGTGAAAATGGAAGGTGTGCAAGGGAGTACATGGAACAAGGAAAATTGGTTCCAGATGAAATAGTTGTCATGATGGTGAAAGACCGCCTATTGCAGCCAGATTCTCAAGAAAAAGGTTGGCTTTTGGATGGGTACATGTTGACCCTAGAAACTACAAAGCCTACGTGGCGCGCAGGCCGAGTAATCTATAAGCTAACTACGTCCTTCGATGATTGCGGGGCGTGCCAACTCGTCGGCCGAGCTCGGCCGAGGAGTAAATTTTTTGATTACCCTAGGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTAGGCTTTAAGCCGGATCTTTTCGTTCTTATAAAAGTAATTGCTGCTGTCCCAGAAGATATTCTTGTTGAGAGAGTTGTTGGAAGAAGGTTAGATCCAATTACTGGAAAGATATACCATTTGAAGTATTCTCCCCCAGAGACCCAAGAGATAGCGTCAAGGCTCACCCAATGTTTTGACGATACAGAAGAAAAGGTGAAATTGCGATTAAACACTCATCATCAGAATGTGGAGGCGGTGAAATTGCGATTAAACACTCATCATCAGAATGTGGAGGCGGTACTTTCATTGTATGAAGACATAACAACTAAGGTAAAATTGCTATTAAACACTCATCATCAGAATGTGGAGGCGGTACTTTCATTGTATGAAGACATAACAACTAAGATTAATGGAAGTGTTACCAAGGAGGATGTGTTTGCCGAAATCGACAGTGCGCTGACGAGACTTGTTGAGAAAAGAAAGGCGACTTGGGAATCTCTGGCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

291

Amino Acids

32.76

Weight (kDa)

6.27

Isoelectric Point (pI)

34.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	5 - 76	2e-19	Adenylate kinase
AAA_17	PF13207	7 - 75	8.5e-08	AAA domain
ADK	PF00406	115 - 226	1.6e-06	Adenylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	413
AccB7I	CCANNNNNTGG	1 cut(s)	485
AccBSI	CCGCTC	1 cut(s)	59
AccII	CGCG	1 cut(s)	246
AciI	CCGC	6 cut(s)	59, 160, 291, 617, 659, 734
AclWI	GGATC	2 cut(s)	405, 470
AcoI	YGGCCR	2 cut(s)	310, 320
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	4 cut(s)	104, 209, 663, 738
AfiI	CCNNNNNNNGG	1 cut(s)	485
AflII	CTTAAG	1 cut(s)	374
AflIII	ACRYGT	1 cut(s)	210
AgsI	TTSAA	1 cut(s)	505
AjuI	GAANNNNNNNTTGG	2 cut(s)	835, 867
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	3 cut(s)	268, 317, 354
AluI	AGCT	3 cut(s)	268, 317, 354
Alw21I	GWGCWC	2 cut(s)	319, 356
Alw26I	GTCTC	2 cut(s)	515, 820
AlwI	GGATC	2 cut(s)	405, 470
AoxI	GGCC	3 cut(s)	250, 310, 320
ApeKI	GCWGC	4 cut(s)	38, 169, 425, 866
ApoI	RAATTY	1 cut(s)	332
AseI	ATTAAT	1 cut(s)	771
Asp700I	GAANNNNTTC	1 cut(s)	441
AspA2I	CCTAGG	1 cut(s)	347
AspLEI	GCGC	3 cut(s)	246, 248, 820
AsuHPI	GGTGA	4 cut(s)	163, 538, 589, 631
AvrII	CCTAGG	1 cut(s)	347
BanII	GRGCYC	2 cut(s)	319, 356
BbsI	GAAGAC	2 cut(s)	684, 759
Bbv12I	GWGCWC	2 cut(s)	319, 356
BbvI	GCAGC	3 cut(s)	25, 181, 412
BccI	CCATC	2 cut(s)	142, 197
BcoDI	GTCTC	2 cut(s)	515, 820
BfaI	CTAG	2 cut(s)	221, 348
BfrI	CTTAAG	1 cut(s)	374
BglI	GCCNNNNNGGC	1 cut(s)	241
BisI	GCNGC	4 cut(s)	39, 170, 426, 867
BlnI	CCTAGG	1 cut(s)	347
BlsI	GCNGC	4 cut(s)	40, 171, 427, 868
BmiI	GGNNCC	1 cut(s)	126
BmsI	GCATC	1 cut(s)	77
BpiI	GAAGAC	2 cut(s)	684, 759
BpmI	CTGGAG	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	165
BsaAI	YACGTR	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	515
BsaJI	CCNNGG	3 cut(s)	323, 347, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	782, 812
Bsc4I	CCNNNNNNNGG	1 cut(s)	485
Bse1I	ACTGG	1 cut(s)	490
BseDI	CCNNGG	3 cut(s)	323, 347, 786
BseGI	GGATG	2 cut(s)	208, 799
BseLI	CCNNNNNNNGG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	490
BsePI	GCGCGC	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	340
BseX3I	CGGCCG	2 cut(s)	310, 320
BseXI	GCAGC	3 cut(s)	25, 181, 412
Bsh1236I	CGCG	1 cut(s)	246
Bsh1285I	CGRYCG	2 cut(s)	313, 323
BshFI	GGCC	3 cut(s)	252, 312, 322
BsiEI	CGRYCG	2 cut(s)	313, 323
BsiHKAI	GWGCWC	2 cut(s)	319, 356
BsiSI	CCGG	1 cut(s)	395
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	485
BsmAI	GTCTC	2 cut(s)	515, 820
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	252, 312, 322
Bso31I	GGTCTC	1 cut(s)	515
Bsp1286I	GDGCHC	2 cut(s)	319, 356
Bsp143I	GATC	2 cut(s)	397, 475
BspACI	CCGC	6 cut(s)	59, 160, 291, 617, 659, 734
BspANI	GGCC	3 cut(s)	252, 312, 322
BspFNI	CGCG	1 cut(s)	246
BspHI	TCATGA	1 cut(s)	144
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	405, 470
BspTI	CTTAAG	1 cut(s)	374
BspTNI	GGTCTC	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	1 cut(s)	490
BssECI	CCNNGG	3 cut(s)	323, 347, 786
BssHII	GCGCGC	1 cut(s)	244
BssMI	GATC	2 cut(s)	397, 475
BssT1I	CCWWGG	2 cut(s)	347, 786
Bst4CI	ACNGT	1 cut(s)	815
BstAFI	CTTAAG	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	240
BstC8I	GCNNGC	4 cut(s)	246, 250, 298, 363
BstDEI	CTNAG	2 cut(s)	690, 765
BstF5I	GGATG	2 cut(s)	208, 799
BstFNI	CGCG	1 cut(s)	246
BstHHI	GCGC	3 cut(s)	246, 248, 820
BstKTI	GATC	2 cut(s)	400, 478
BstMAI	GTCTC	2 cut(s)	515, 820
BstMBI	GATC	2 cut(s)	397, 475
BstMCI	CGRYCG	2 cut(s)	313, 323
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 241, 297
BstNSI	RCATGY	2 cut(s)	35, 214
BstUI	CGCG	1 cut(s)	246
BstV1I	GCAGC	3 cut(s)	25, 181, 412
BstV2I	GAAGAC	2 cut(s)	684, 759
BstX2I	RGATCY	2 cut(s)	397, 475
BstYI	RGATCY	2 cut(s)	397, 475
BstZI	CGGCCG	2 cut(s)	310, 320
BsuRI	GGCC	3 cut(s)	252, 312, 322
BtgZI	GCGATG	1 cut(s)	342
BtsCI	GGATG	2 cut(s)	208, 799
BtsIMutI	CAGTG	1 cut(s)	820
Cac8I	GCNNGC	4 cut(s)	246, 250, 298, 363
CciI	TCATGA	1 cut(s)	144
CfoI	GCGC	3 cut(s)	246, 248, 820
CseI	GACGC	1 cut(s)	525
Csp6I	GTAC	4 cut(s)	103, 208, 662, 737
CviAII	CATG	4 cut(s)	32, 106, 145, 211
CviQI	GTAC	4 cut(s)	103, 208, 662, 737
DdeI	CTNAG	2 cut(s)	690, 765
DpnI	GATC	2 cut(s)	399, 477
DpnII	GATC	2 cut(s)	397, 475
EaeI	YGGCCR	2 cut(s)	310, 320
EagI	CGGCCG	2 cut(s)	310, 320
Ecl136II	GAGCTC	2 cut(s)	317, 354
EclXI	CGGCCG	2 cut(s)	310, 320
Eco130I	CCWWGG	2 cut(s)	347, 786
Eco24I	GRGCYC	2 cut(s)	319, 356
Eco31I	GGTCTC	1 cut(s)	515
Eco52I	CGGCCG	2 cut(s)	310, 320
Eco53kI	GAGCTC	2 cut(s)	317, 354
EcoICRI	GAGCTC	2 cut(s)	317, 354
EcoT14I	CCWWGG	2 cut(s)	347, 786
EcoT38I	GRGCYC	2 cut(s)	319, 356
ErhI	CCWWGG	2 cut(s)	347, 786
FaeI	CATG	4 cut(s)	35, 109, 148, 214
FalI	AAGNNNNNCTT	4 cut(s)	180, 212, 429, 461
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	4 cut(s)	31, 105, 144, 210
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	4 cut(s)	39, 170, 426, 867
FokI	GGATG	2 cut(s)	215, 806
FriOI	GRGCYC	2 cut(s)	319, 356
Fsp4HI	GCNGC	4 cut(s)	39, 170, 426, 867
FspBI	CTAG	2 cut(s)	221, 348
GlaI	GCGC	3 cut(s)	245, 247, 819
GluI	GCNGC	4 cut(s)	39, 170, 426, 867
GsuI	CTGGAG	1 cut(s)	63
HaeIII	GGCC	3 cut(s)	252, 312, 322
HapII	CCGG	1 cut(s)	395
HgaI	GACGC	1 cut(s)	525
HhaI	GCGC	3 cut(s)	246, 248, 820
Hin1II	CATG	4 cut(s)	35, 109, 148, 214
Hin6I	GCGC	3 cut(s)	244, 246, 818
HinP1I	GCGC	3 cut(s)	244, 246, 818
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	2 cut(s)	176, 857
HpaII	CCGG	1 cut(s)	395
HphI	GGTGA	4 cut(s)	163, 538, 589, 631
Hpy166II	GTNNAC	2 cut(s)	12, 216
Hpy188I	TCNGA	3 cut(s)	606, 648, 723
Hpy188III	TCNNGA	3 cut(s)	128, 145, 182
Hpy8I	GTNNAC	2 cut(s)	12, 216
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	81, 289, 462
HpyCH4III	ACNGT	1 cut(s)	815
HpyCH4IV	ACGT	2 cut(s)	239, 275
HpyCH4V	TGCA	4 cut(s)	31, 68, 95, 169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 241, 297
HpyF3I	CTNAG	2 cut(s)	690, 765
HpySE526I	ACGT	2 cut(s)	239, 275
Hsp92II	CATG	4 cut(s)	35, 109, 148, 214
HspAI	GCGC	3 cut(s)	244, 246, 818
Kzo9I	GATC	2 cut(s)	397, 475
LmnI	GCTCC	2 cut(s)	56, 351
Lsp1109I	GCAGC	3 cut(s)	25, 181, 412
LweI	GCATC	1 cut(s)	77
MaeI	CTAG	2 cut(s)	221, 348
MaeII	ACGT	2 cut(s)	239, 275
MaeIII	GTNAC	1 cut(s)	781
MalI	GATC	2 cut(s)	399, 477
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	2 cut(s)	397, 475
MboII	GAAGA	5 cut(s)	449, 477, 581, 689, 764
MfeI	CAATTG	1 cut(s)	366
MflI	RGATCY	2 cut(s)	397, 475
MhlI	GDGCHC	2 cut(s)	319, 356
MmeI	TCCRAC	1 cut(s)	442
MnlI	CCTC	5 cut(s)	318, 607, 649, 724, 784
MroXI	GAANNNNTTC	1 cut(s)	441
MseI	TTAA	6 cut(s)	375, 390, 590, 632, 707, 771
MslI	CAYNNNNRTG	4 cut(s)	149, 606, 648, 723
MspCI	CTTAAG	1 cut(s)	374
MspI	CCGG	1 cut(s)	395
MunI	CAATTG	1 cut(s)	366
MvnI	CGCG	1 cut(s)	246
MwoI	GCNNNNNNNGC	3 cut(s)	65, 241, 297
NdeII	GATC	2 cut(s)	397, 475
NlaIII	CATG	4 cut(s)	35, 109, 148, 214
NlaIV	GGNNCC	1 cut(s)	126
NmeAIII	GCCGAG	4 cut(s)	278, 298, 338, 348
NspI	RCATGY	2 cut(s)	35, 214
PagI	TCATGA	1 cut(s)	144
PauI	GCGCGC	1 cut(s)	244
PciI	ACATGT	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	441
PfeI	GAWTC	2 cut(s)	176, 857
PflMI	CCANNNNNTGG	1 cut(s)	485
PkrI	GCNGC	4 cut(s)	40, 171, 427, 868
Ppu21I	YACGTR	1 cut(s)	240
PscI	ACATGT	1 cut(s)	210
PshBI	ATTAAT	1 cut(s)	771
PsiI	TTATAA	1 cut(s)	413
Psp124BI	GAGCTC	2 cut(s)	319, 356
PspN4I	GGNNCC	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	397, 475
PteI	GCGCGC	1 cut(s)	244
RsaI	GTAC	4 cut(s)	104, 209, 663, 738
RsaNI	GTAC	4 cut(s)	103, 208, 662, 737
RseI	CAYNNNNRTG	4 cut(s)	149, 606, 648, 723
SacI	GAGCTC	2 cut(s)	319, 356
SaqAI	TTAA	6 cut(s)	375, 390, 590, 632, 707, 771
SatI	GCNGC	4 cut(s)	39, 170, 426, 867
Sau3AI	GATC	2 cut(s)	397, 475
SduI	GDGCHC	2 cut(s)	319, 356
SfaNI	GCATC	1 cut(s)	77
SmiMI	CAYNNNNRTG	4 cut(s)	149, 606, 648, 723
SmlI	CTYRAG	2 cut(s)	180, 374
SmoI	CTYRAG	2 cut(s)	180, 374
SsiI	CCGC	6 cut(s)	59, 160, 291, 617, 659, 734
SspMI	CTAG	2 cut(s)	221, 348
SstI	GAGCTC	2 cut(s)	319, 356
StyI	CCWWGG	2 cut(s)	347, 786
TaaI	ACNGT	1 cut(s)	815
TaiI	ACGT	2 cut(s)	242, 278
TaqI	TCGA	2 cut(s)	282, 810
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	2 cut(s)	176, 857
Tru1I	TTAA	6 cut(s)	375, 390, 590, 632, 707, 771
Tru9I	TTAA	6 cut(s)	375, 390, 590, 632, 707, 771
TscAI	CASTG	1 cut(s)	820
TseI	GCWGC	4 cut(s)	38, 169, 425, 866
TspDTI	ATGAA	5 cut(s)	147, 657, 690, 732, 765
TspRI	CASTG	1 cut(s)	820
Van91I	CCANNNNNTGG	1 cut(s)	485
Vha464I	CTTAAG	1 cut(s)	374
VspI	ATTAAT	1 cut(s)	771
XapI	RAATTY	1 cut(s)	332
XceI	RCATGY	2 cut(s)	35, 214
XmaJI	CCTAGG	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	441
XspI	CTAG	2 cut(s)	221, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.