Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009538.1

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

8750 .. 10884

Gene Structure 2135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009538.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

atgccaataatccggtcatcaggtgagcacatcatcggagccaataatcagacaagtcgctggtcactctggtctctgtggcttctagcgaaggaaggcgagaagagtcatatgagtttccaaatcctaatgaatttataccatggtttacgtgactaccacttatgtcaagcttttctcactacgagaagcagattaactgaattatgctcctctacgcagtatgatttggtacatgttgctgctggagatttacttagagcggaaattgcatctgggagtgaaaatgggaagcgtgcaagggcgtacatggacaaaggacaattggttccagatgaaatagttgttatgatggtgaaagagcgtctattacagccagattctcgagaaaaaggctggctcttggatggataccctaggagctcatcgcaagcaatagctctgaaggaattcggcttcgagccggatcttttcattcttcttgacgtccctgaagagattcttgttgacagagtagttggaagaaggttagatcctgttactggaaagatctaccatctgaagtattctcctccagagaccccagagatcgcggcaaggctcacccaacgttttgatgatacagaagaaaaggaccccgtaatcaggccactacatgaactggagaaaagtaacttggaagatattctaactgaaattccattgtggataaaatgccccgattacgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

243

Amino Acids

27.88

Weight (kDa)

5.34

Isoelectric Point (pI)

60.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	489
AccBSI	CCGCTC	1 cut(s)	263
AccII	CGCG	1 cut(s)	593
AciI	CCGC	2 cut(s)	263, 593
AclI	AACGTT	1 cut(s)	610
AclWI	GGATC	2 cut(s)	474, 527
AcsI	RAATTY	3 cut(s)	133, 449, 696
AcuI	CTGAAG	3 cut(s)	464, 513, 581
AcyI	GRCGYC	1 cut(s)	486
AfaI	GTAC	2 cut(s)	234, 308
AfiI	CCNNNNNNNGG	2 cut(s)	542, 645
AflIII	ACRYGT	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	659, 691
AloI	GAACNNNNNNTCC	2 cut(s)	312, 344
AluBI	AGCT	3 cut(s)	173, 423, 440
AluI	AGCT	3 cut(s)	173, 423, 440
Alw21I	GWGCWC	2 cut(s)	30, 425
Alw26I	GTCTC	2 cut(s)	78, 572
AlwI	GGATC	2 cut(s)	474, 527
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	1 cut(s)	647
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	3 cut(s)	133, 449, 696
Asp700I	GAANNNNTTC	3 cut(s)	449, 498, 684
AspA2I	CCTAGG	1 cut(s)	416
AspS9I	GGNCC	1 cut(s)	634
AsuHPI	GGTGA	3 cut(s)	35, 367, 595
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	634
AvrII	CCTAGG	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	425
Bbv12I	GWGCWC	2 cut(s)	30, 425
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	3 cut(s)	346, 401, 564
BciVI	GTATCC	1 cut(s)	404
BcoDI	GTCTC	2 cut(s)	78, 572
BfaI	CTAG	2 cut(s)	86, 417
BfuI	GTATCC	1 cut(s)	404
BglII	AGATCT	1 cut(s)	549
BisI	GCNGC	2 cut(s)	243, 594
BlnI	CCTAGG	1 cut(s)	416
BlsI	GCNGC	2 cut(s)	244, 595
Bme18I	GGWCC	1 cut(s)	634
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	634
BmiI	GGNNCC	3 cut(s)	40, 330, 636
BmsI	GCATC	1 cut(s)	281
BpmI	CTGGAG	3 cut(s)	267, 558, 683
BsaAI	YACGTR	1 cut(s)	152
BsaHI	GRCGYC	1 cut(s)	486
BsaI	GGTCTC	2 cut(s)	78, 572
BsaJI	CCNNGG	2 cut(s)	142, 416
BsaWI	WCCGGW	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	2 cut(s)	542, 645
Bse1I	ACTGG	2 cut(s)	547, 666
BseDI	CCNNGG	2 cut(s)	142, 416
BseGI	GGATG	1 cut(s)	412
BseLI	CCNNNNNNNGG	2 cut(s)	542, 645
BseNI	ACTGG	2 cut(s)	547, 666
BseRI	GAGGAG	2 cut(s)	202, 561
BseXI	GCAGC	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	593
BshFI	GGCC	1 cut(s)	649
BsiHKAI	GWGCWC	2 cut(s)	30, 425
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	13, 464
BslFI	GGGAC	1 cut(s)	473
BslI	CCNNNNNNNGG	2 cut(s)	542, 645
BsmAI	GTCTC	2 cut(s)	78, 572
BsmFI	GGGAC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	649
Bso31I	GGTCTC	2 cut(s)	78, 572
BsoBI	CYCGRG	1 cut(s)	384
Bsp1286I	GDGCHC	2 cut(s)	30, 425
Bsp143I	GATC	4 cut(s)	466, 532, 549, 588
Bsp19I	CCATGG	1 cut(s)	142
BspACI	CCGC	2 cut(s)	263, 593
BspANI	GGCC	1 cut(s)	649
BspFNI	CGCG	1 cut(s)	593
BspLI	GGNNCC	3 cut(s)	40, 330, 636
BspPI	GGATC	2 cut(s)	474, 527
BspTNI	GGTCTC	2 cut(s)	78, 572
BsrBI	CCGCTC	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	547, 666
BssECI	CCNNGG	2 cut(s)	142, 416
BssMI	GATC	4 cut(s)	466, 532, 549, 588
BssNI	GRCGYC	1 cut(s)	486
BssT1I	CCWWGG	2 cut(s)	142, 416
Bst6I	CTCTTC	2 cut(s)	98, 489
BstACI	GRCGYC	1 cut(s)	486
BstBAI	YACGTR	1 cut(s)	152
BstC8I	GCNNGC	3 cut(s)	297, 398, 432
BstDEI	CTNAG	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	412
BstFNI	CGCG	1 cut(s)	593
BstKTI	GATC	4 cut(s)	469, 535, 552, 591
BstMAI	GTCTC	2 cut(s)	78, 572
BstMBI	GATC	4 cut(s)	466, 532, 549, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNSI	RCATGY	1 cut(s)	239
BstUI	CGCG	1 cut(s)	593
BstV1I	GCAGC	1 cut(s)	229
BstX2I	RGATCY	3 cut(s)	466, 532, 549
BstYI	RGATCY	3 cut(s)	466, 532, 549
BsuI	GTATCC	1 cut(s)	404
BsuRI	GGCC	1 cut(s)	649
BtgI	CCRYGG	1 cut(s)	142
BtgZI	GCGATG	1 cut(s)	411
BtsCI	GGATG	1 cut(s)	412
Cac8I	GCNNGC	3 cut(s)	297, 398, 432
Cfr13I	GGNCC	1 cut(s)	634
CseI	GACGC	1 cut(s)	353
Csp6I	GTAC	2 cut(s)	233, 307
CviAII	CATG	4 cut(s)	143, 236, 310, 656
CviQI	GTAC	2 cut(s)	233, 307
DdeI	CTNAG	1 cut(s)	257
DpnI	GATC	4 cut(s)	468, 534, 551, 590
DpnII	GATC	4 cut(s)	466, 532, 549, 588
Eam1104I	CTCTTC	2 cut(s)	98, 489
EarI	CTCTTC	2 cut(s)	98, 489
Ecl136II	GAGCTC	1 cut(s)	423
Eco130I	CCWWGG	2 cut(s)	142, 416
Eco24I	GRGCYC	1 cut(s)	425
Eco31I	GGTCTC	2 cut(s)	78, 572
Eco47I	GGWCC	1 cut(s)	634
Eco53kI	GAGCTC	1 cut(s)	423
Eco57I	CTGAAG	3 cut(s)	464, 513, 581
Eco88I	CYCGRG	1 cut(s)	384
EcoICRI	GAGCTC	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	634
EcoRI	GAATTC	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	142, 416
EcoT38I	GRGCYC	1 cut(s)	425
ErhI	CCWWGG	2 cut(s)	142, 416
FaeI	CATG	4 cut(s)	146, 239, 313, 659
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	1 cut(s)	473
FatI	CATG	4 cut(s)	142, 235, 309, 655
FauNDI	CATATG	1 cut(s)	111
Fnu4HI	GCNGC	2 cut(s)	243, 594
FokI	GGATG	1 cut(s)	419
FriOI	GRGCYC	1 cut(s)	425
Fsp4HI	GCNGC	2 cut(s)	243, 594
FspBI	CTAG	2 cut(s)	86, 417
GluI	GCNGC	2 cut(s)	243, 594
GsuI	CTGGAG	3 cut(s)	267, 558, 683
HaeIII	GGCC	1 cut(s)	649
HapII	CCGG	2 cut(s)	13, 464
HgaI	GACGC	1 cut(s)	353
Hin1I	GRCGYC	1 cut(s)	486
Hin1II	CATG	4 cut(s)	146, 239, 313, 659
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	3 cut(s)	106, 380, 499
HpaII	CCGG	2 cut(s)	13, 464
HphI	GGTGA	3 cut(s)	35, 367, 595
Hpy166II	GTNNAC	2 cut(s)	149, 508
Hpy188I	TCNGA	4 cut(s)	38, 51, 444, 561
Hpy188III	TCNNGA	5 cut(s)	332, 384, 386, 482, 575
Hpy8I	GTNNAC	2 cut(s)	149, 508
HpyAV	CCTTC	4 cut(s)	85, 89, 439, 519
HpyCH4IV	ACGT	3 cut(s)	151, 486, 610
HpyCH4V	TGCA	2 cut(s)	272, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpyF3I	CTNAG	1 cut(s)	257
HpySE526I	ACGT	3 cut(s)	151, 486, 610
Hsp92I	GRCGYC	1 cut(s)	486
Hsp92II	CATG	4 cut(s)	146, 239, 313, 659
Kzo9I	GATC	4 cut(s)	466, 532, 549, 588
LmnI	GCTCC	3 cut(s)	38, 215, 420
Lsp1109I	GCAGC	1 cut(s)	229
LweI	GCATC	1 cut(s)	281
MaeI	CTAG	2 cut(s)	86, 417
MaeII	ACGT	3 cut(s)	151, 486, 610
MaeIII	GTNAC	4 cut(s)	63, 152, 538, 671
MalI	GATC	4 cut(s)	468, 534, 551, 590
MbiI	CCGCTC	1 cut(s)	263
MboI	GATC	4 cut(s)	466, 532, 549, 588
MboII	GAAGA	6 cut(s)	115, 470, 506, 534, 638, 692
MfeI	CAATTG	1 cut(s)	323
MflI	RGATCY	3 cut(s)	466, 532, 549
MhlI	GDGCHC	2 cut(s)	30, 425
MluCI	AATT	6 cut(s)	133, 203, 267, 323, 449, 696
MlyI	GAGTC	1 cut(s)	115
MmeI	TCCRAC	1 cut(s)	499
MnlI	CCTC	2 cut(s)	223, 582
MroXI	GAANNNNTTC	3 cut(s)	449, 498, 684
MseI	TTAA	1 cut(s)	197
MspI	CCGG	2 cut(s)	13, 464
MunI	CAATTG	1 cut(s)	323
MvnI	CGCG	1 cut(s)	593
MwoI	GCNNNNNNNGC	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	142
NdeI	CATATG	1 cut(s)	111
NdeII	GATC	4 cut(s)	466, 532, 549, 588
NlaIII	CATG	4 cut(s)	146, 239, 313, 659
NlaIV	GGNNCC	3 cut(s)	40, 330, 636
NmuCI	GTSAC	2 cut(s)	63, 152
NspI	RCATGY	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	384
PciI	ACATGT	1 cut(s)	235
PdmI	GAANNNNTTC	3 cut(s)	449, 498, 684
PfeI	GAWTC	2 cut(s)	380, 499
PkrI	GCNGC	2 cut(s)	244, 595
PleI	GAGTC	1 cut(s)	114
PpsI	GAGTC	1 cut(s)	114
Ppu21I	YACGTR	1 cut(s)	152
PpuMI	RGGWCCY	1 cut(s)	634
PscI	ACATGT	1 cut(s)	235
Psp124BI	GAGCTC	1 cut(s)	425
Psp1406I	AACGTT	1 cut(s)	610
Psp5II	RGGWCCY	1 cut(s)	634
PspN4I	GGNNCC	3 cut(s)	40, 330, 636
PspPI	GGNCC	1 cut(s)	634
PspPPI	RGGWCCY	1 cut(s)	634
PsuI	RGATCY	3 cut(s)	466, 532, 549
RsaI	GTAC	2 cut(s)	234, 308
RsaNI	GTAC	2 cut(s)	233, 307
SacI	GAGCTC	1 cut(s)	425
SaqAI	TTAA	1 cut(s)	197
SatI	GCNGC	2 cut(s)	243, 594
Sau3AI	GATC	4 cut(s)	466, 532, 549, 588
Sau96I	GGNCC	1 cut(s)	634
SchI	GAGTC	1 cut(s)	115
SduI	GDGCHC	2 cut(s)	30, 425
SetI	ASST	8 cut(s)	25, 154, 175, 425, 442, 489, 530, 613
SfaNI	GCATC	1 cut(s)	281
Sfr274I	CTCGAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	634
SlaI	CTCGAG	1 cut(s)	384
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	6 cut(s)	133, 203, 267, 323, 449, 696
SsiI	CCGC	2 cut(s)	263, 593
SspMI	CTAG	2 cut(s)	86, 417
SstI	GAGCTC	1 cut(s)	425
StyI	CCWWGG	2 cut(s)	142, 416
TaiI	ACGT	3 cut(s)	154, 489, 613
TaqI	TCGA	2 cut(s)	385, 459
TasI	AATT	6 cut(s)	133, 203, 267, 323, 449, 696
TauI	GCSGC	1 cut(s)	596
TfiI	GAWTC	2 cut(s)	380, 499
Tru1I	TTAA	1 cut(s)	197
Tru9I	TTAA	1 cut(s)	197
TseFI	GTSAC	2 cut(s)	63, 152
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	2 cut(s)	63, 152
TspDTI	ATGAA	4 cut(s)	146, 351, 463, 672
VpaK11BI	GGWCC	1 cut(s)	634
XapI	RAATTY	3 cut(s)	133, 449, 696
XceI	RCATGY	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	384
XmaJI	CCTAGG	1 cut(s)	416
XmnI	GAANNNNTTC	3 cut(s)	449, 498, 684
XspI	CTAG	2 cut(s)	86, 417
ZraI	GACGTC	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.