Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

40457592 .. 40466582

Gene Structure 8991 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034316

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGATTTGGCATGGCAATGGAGGACTGGTTCAGAGGGTGAGTGGGTTTCTTCGTGGAGAAGGTCAGCGAACGAGAAAGGAGAAGATGGGGGTTGGATTTGGGACTCAATTGCAGGGTTTTCTGGAGTATGATTTGATACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGTGAAAATGGGAAGCGTGCAAGGGCGTACATGGACAAAGGACAATTGGTTCCAGATGAAATAGTTGTTATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTACGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTAATAGTTGGAAGAAGGTTAGATGCTGTTACTGGAAAGATCATTTGCCTATTAATTAATGACGCCGTAATCAGGCCACTACATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAACTGAAATTCCATTTTTATTTGAAGAGGGAGGTGATTGGGAAAGGAAGAATCGATTGAAGGTATATGAAGGCTTGTACTGCATGTCCACTCGAAATTTTAAGAAGGCAGCCGATTTGTTCCTGGATTCCATTTCTACCTTCACCACTTACACAATATTTCCCTATGACATCTTCATATTTTATACCGTCCTGACAAGCATTATATCTTTGGACAGAGTTTCTTTAAAACAGAAGAGAGAAAATGAGAAGCTTCATTCAGAAATAATTGAATTGAAAGACCAGCTCCAAGCCAAACAGGCAGTGAATGAGGATTTTGAAGCCCAGAAGAAGATTAAAGCACTTGAACAAACGTTAAAGGAGAAGGAGCAGGAGCTTACTGATCTGTCAGAAATTTACAGCGGACTGAAAAATCATTCAAAAATCTATATTGGCGTGAAGACATTGGGTGATCTTGACTTGAAGGCATTTCAAGTTGCAGCCAAGAGAAGATATACTGCATTAGAAGAAGCAAATGAGAGGGCAGCGGAGTTGTGCTCTATGTGGGAGGATTATGTTGGGGATTCTAAATGGAACCCATACAAGGAAATTATTGATGAAGAAGATAAAAAGTTGAAAATTTTGAAGACTGAGCTGGGGGATGAAGTATACAAGGTGGTGACAACTTCGTTAATGGAATTGAATGAACATAAGTCCAGTGGGAGGTATAAGATACAAGAGCTTTGGAATTTTAAAGCAGGGAGGAAGGCAACACTTAAAGAGGGAGTTGCTTACATTCTGAAGCAATGGAACGCCCTTAAGAACACGAAGCGGCGAAGAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

443

Amino Acids

50.79

Weight (kDa)

6.66

Isoelectric Point (pI)

39.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	30 - 131	7.2e-27	Adenylate kinase
AAA_17	PF13207	30 - 131	5.2e-14	AAA domain
RPN7	PF10602	167 - 247	8.5e-28	26S proteasome subunit RPN7
XH	PF03469	315 - 436	8.5e-43	XH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	1152
AciI	CCGC	4 cut(s)	167, 906, 1031, 1315
AclI	AACGTT	1 cut(s)	857
AclWI	GGATC	1 cut(s)	378
AcsI	RAATTY	6 cut(s)	353, 513, 601, 897, 1122, 1231
AcuI	CTGAAG	1 cut(s)	1304
AcyI	GRCGYC	1 cut(s)	453
AfaI	GTAC	2 cut(s)	212, 584
AfiI	CCNNNNNNNGG	3 cut(s)	462, 1087, 1206
AflII	CTTAAG	2 cut(s)	347, 1301
AflIII	ACRYGT	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	627
AjuI	GAANNNNNNNTTGG	2 cut(s)	476, 508
AloI	GAACNNNNNNTCC	4 cut(s)	12, 44, 216, 248
AluBI	AGCT	6 cut(s)	327, 757, 790, 880, 1138, 1225
AluI	AGCT	6 cut(s)	327, 757, 790, 880, 1138, 1225
Alw21I	GWGCWC	2 cut(s)	329, 1043
AlwI	GGATC	1 cut(s)	378
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	1 cut(s)	464
ApeKI	GCWGC	4 cut(s)	146, 614, 983, 1028
ApoI	RAATTY	6 cut(s)	353, 513, 601, 897, 1122, 1231
AseI	ATTAAT	2 cut(s)	443, 447
Asp700I	GAANNNNTTC	1 cut(s)	501
AsuHPI	GGTGA	6 cut(s)	49, 271, 551, 640, 965, 1174
AvaI	CYCGRG	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	329
BbsI	GAAGAC	2 cut(s)	950, 1136
Bbv12I	GWGCWC	2 cut(s)	329, 1043
BbvI	GCAGC	4 cut(s)	133, 626, 995, 1040
BccI	CCATC	3 cut(s)	79, 250, 305
BceAI	ACGGC	1 cut(s)	440
BciT130I	CCWGG	1 cut(s)	629
BciVI	GTATCC	1 cut(s)	308
BfaI	CTAG	1 cut(s)	1327
BfrI	CTTAAG	2 cut(s)	347, 1301
BfuI	GTATCC	1 cut(s)	308
BglI	GCCNNNNNGGC	1 cut(s)	803
BisI	GCNGC	5 cut(s)	147, 615, 984, 1029, 1316
BlsI	GCNGC	5 cut(s)	148, 616, 985, 1030, 1317
Bme1390I	CCNGG	1 cut(s)	629
BmeT110I	CYCGRG	1 cut(s)	288
BmiI	GGNNCC	2 cut(s)	234, 1079
BmrFI	CCNGG	1 cut(s)	629
BmsI	GCATC	2 cut(s)	185, 403
BpiI	GAAGAC	2 cut(s)	950, 1136
BplI	GAGNNNNNCTC	2 cut(s)	1025, 1057
BpmI	CTGGAG	3 cut(s)	143, 171, 500
Bsa29I	ATCGAT	1 cut(s)	559
BsaHI	GRCGYC	1 cut(s)	453
BsaXI	ACNNNNNCTCC	2 cut(s)	12, 42
Bsc4I	CCNNNNNNNGG	3 cut(s)	462, 1087, 1206
Bse1I	ACTGG	4 cut(s)	30, 427, 483, 1200
Bse3DI	GCAATG	2 cut(s)	22, 1295
BseBI	CCWGG	1 cut(s)	629
BseCI	ATCGAT	1 cut(s)	559
BseGI	GGATG	2 cut(s)	316, 1150
BseLI	CCNNNNNNNGG	3 cut(s)	462, 1087, 1206
BseMI	GCAATG	2 cut(s)	22, 1295
BseMII	CTCAG	1 cut(s)	1125
BseNI	ACTGG	4 cut(s)	30, 427, 483, 1200
BseXI	GCAGC	4 cut(s)	133, 626, 995, 1040
BseYI	CCCAGC	1 cut(s)	1138
BshFI	GGCC	1 cut(s)	466
BshVI	ATCGAT	1 cut(s)	559
BsiHKAI	GWGCWC	2 cut(s)	329, 1043
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	3 cut(s)	462, 1087, 1206
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	466
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	2 cut(s)	329, 1043
Bsp143I	GATC	4 cut(s)	370, 429, 886, 955
BspACI	CCGC	4 cut(s)	167, 906, 1031, 1315
BspANI	GGCC	1 cut(s)	466
BspCNI	CTCAG	1 cut(s)	1126
BspDI	ATCGAT	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	234, 1079
BspPI	GGATC	1 cut(s)	378
BspTI	CTTAAG	2 cut(s)	347, 1301
BsrBI	CCGCTC	1 cut(s)	167
BsrDI	GCAATG	2 cut(s)	22, 1295
BsrI	ACTGG	4 cut(s)	30, 427, 483, 1200
BssMI	GATC	4 cut(s)	370, 429, 886, 955
BssNAI	GTATAC	1 cut(s)	1153
BssNI	GRCGYC	1 cut(s)	453
Bst1107I	GTATAC	1 cut(s)	1153
Bst2UI	CCWGG	1 cut(s)	629
Bst4CI	ACNGT	1 cut(s)	694
Bst6I	CTCTTC	2 cut(s)	525, 734
BstACI	GRCGYC	1 cut(s)	453
BstAFI	CTTAAG	2 cut(s)	347, 1301
BstC8I	GCNNGC	3 cut(s)	201, 302, 336
BstDEI	CTNAG	2 cut(s)	161, 1134
BstF5I	GGATG	2 cut(s)	316, 1150
BstKTI	GATC	4 cut(s)	373, 432, 889, 958
BstMBI	GATC	4 cut(s)	370, 429, 886, 955
BstMWI	GCNNNNNNNGC	3 cut(s)	173, 585, 803
BstNI	CCWGG	1 cut(s)	629
BstNSI	RCATGY	2 cut(s)	143, 592
BstSCI	CCNGG	1 cut(s)	627
BstV1I	GCAGC	4 cut(s)	133, 626, 995, 1040
BstV2I	GAAGAC	2 cut(s)	950, 1136
BstX2I	RGATCY	1 cut(s)	370
BstYI	RGATCY	1 cut(s)	370
BstZ17I	GTATAC	1 cut(s)	1153
Bsu15I	ATCGAT	1 cut(s)	559
BsuI	GTATCC	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	466
BsuTUI	ATCGAT	1 cut(s)	559
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	316, 1150
BtsI	GCAGTG	1 cut(s)	813
BtsIMutI	CAGTG	2 cut(s)	813, 1207
Cac8I	GCNNGC	3 cut(s)	201, 302, 336
ClaI	ATCGAT	1 cut(s)	559
CseI	GACGC	2 cut(s)	257, 461
Csp6I	GTAC	2 cut(s)	211, 583
CviAII	CATG	5 cut(s)	11, 140, 214, 473, 589
CviQI	GTAC	2 cut(s)	211, 583
DdeI	CTNAG	2 cut(s)	161, 1134
DpnI	GATC	4 cut(s)	372, 431, 888, 957
DpnII	GATC	4 cut(s)	370, 429, 886, 955
DraI	TTTAAA	2 cut(s)	732, 1237
Eam1104I	CTCTTC	2 cut(s)	525, 734
EarI	CTCTTC	2 cut(s)	525, 734
Ecl136II	GAGCTC	1 cut(s)	327
Eco24I	GRGCYC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	327
Eco57I	CTGAAG	1 cut(s)	1304
Eco88I	CYCGRG	1 cut(s)	288
EcoICRI	GAGCTC	1 cut(s)	327
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	627
EcoT38I	GRGCYC	1 cut(s)	329
FaeI	CATG	5 cut(s)	14, 143, 217, 476, 592
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	5 cut(s)	10, 139, 213, 472, 588
FblI	GTMKAC	1 cut(s)	1152
Fnu4HI	GCNGC	5 cut(s)	147, 615, 984, 1029, 1316
FokI	GGATG	2 cut(s)	323, 1157
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	5 cut(s)	147, 615, 984, 1029, 1316
FspBI	CTAG	1 cut(s)	1327
GluI	GCNGC	5 cut(s)	147, 615, 984, 1029, 1316
GsaI	CCCAGC	1 cut(s)	1142
GsuI	CTGGAG	3 cut(s)	143, 171, 500
HaeIII	GGCC	1 cut(s)	466
HapII	CCGG	1 cut(s)	368
HgaI	GACGC	2 cut(s)	257, 461
Hin1I	GRCGYC	1 cut(s)	453
Hin1II	CATG	5 cut(s)	14, 143, 217, 476, 592
HindIII	AAGCTT	1 cut(s)	755
HinfI	GANTC	5 cut(s)	103, 284, 556, 632, 1067
HpaII	CCGG	1 cut(s)	368
HphI	GGTGA	6 cut(s)	49, 271, 551, 640, 965, 1174
Hpy166II	GTNNAC	2 cut(s)	594, 1153
Hpy188I	TCNGA	4 cut(s)	33, 766, 895, 1284
Hpy188III	TCNNGA	7 cut(s)	122, 236, 288, 290, 386, 697, 959
Hpy8I	GTNNAC	2 cut(s)	594, 1153
HpyAV	CCTTC	9 cut(s)	53, 399, 559, 569, 604, 655, 862, 961, 1243
HpyCH4III	ACNGT	1 cut(s)	694
HpyCH4IV	ACGT	2 cut(s)	390, 857
HpyCH4V	TGCA	6 cut(s)	112, 176, 203, 588, 983, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	173, 585, 803
HpyF3I	CTNAG	2 cut(s)	161, 1134
HpySE526I	ACGT	2 cut(s)	390, 857
Hsp92I	GRCGYC	1 cut(s)	453
Hsp92II	CATG	5 cut(s)	14, 143, 217, 476, 592
Kzo9I	GATC	4 cut(s)	370, 429, 886, 955
LmnI	GCTCC	3 cut(s)	795, 871, 877
Lsp1109I	GCAGC	4 cut(s)	133, 626, 995, 1040
LweI	GCATC	2 cut(s)	185, 403
MaeI	CTAG	1 cut(s)	1327
MaeII	ACGT	2 cut(s)	390, 857
MaeIII	GTNAC	3 cut(s)	418, 488, 1162
MalI	GATC	4 cut(s)	372, 431, 888, 957
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	4 cut(s)	370, 429, 886, 955
MfeI	CAATTG	3 cut(s)	107, 227, 339
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	329, 1043
MlyI	GAGTC	1 cut(s)	97
MmeI	TCCRAC	2 cut(s)	73, 379
MroXI	GAANNNNTTC	1 cut(s)	501
MslI	CAYNNNNRTG	1 cut(s)	15
MspA1I	CMGCKG	2 cut(s)	906, 1031
MspCI	CTTAAG	2 cut(s)	347, 1301
MspI	CCGG	1 cut(s)	368
MspR9I	CCNGG	1 cut(s)	629
MunI	CAATTG	3 cut(s)	107, 227, 339
MvaI	CCWGG	1 cut(s)	629
MwoI	GCNNNNNNNGC	3 cut(s)	173, 585, 803
NdeII	GATC	4 cut(s)	370, 429, 886, 955
NlaIII	CATG	5 cut(s)	14, 143, 217, 476, 592
NlaIV	GGNNCC	2 cut(s)	234, 1079
NmuCI	GTSAC	1 cut(s)	1162
NspI	RCATGY	2 cut(s)	143, 592
PacI	TTAATTAA	1 cut(s)	447
PaeR7I	CTCGAG	1 cut(s)	288
PciI	ACATGT	1 cut(s)	139
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	4 cut(s)	284, 556, 632, 1067
PfoI	TCCNGGA	1 cut(s)	627
PkrI	GCNGC	5 cut(s)	148, 616, 985, 1030, 1317
PleI	GAGTC	1 cut(s)	97
PpsI	GAGTC	1 cut(s)	97
PscI	ACATGT	1 cut(s)	139
PshBI	ATTAAT	2 cut(s)	443, 447
Psp124BI	GAGCTC	1 cut(s)	329
Psp1406I	AACGTT	1 cut(s)	857
Psp6I	CCWGG	1 cut(s)	627
PspFI	CCCAGC	1 cut(s)	1138
PspGI	CCWGG	1 cut(s)	627
PspN4I	GGNNCC	2 cut(s)	234, 1079
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	2 cut(s)	212, 584
RsaNI	GTAC	2 cut(s)	211, 583
RseI	CAYNNNNRTG	1 cut(s)	15
SacI	GAGCTC	1 cut(s)	329
SatI	GCNGC	5 cut(s)	147, 615, 984, 1029, 1316
Sau3AI	GATC	4 cut(s)	370, 429, 886, 955
SchI	GAGTC	1 cut(s)	97
ScrFI	CCNGG	1 cut(s)	629
SduI	GDGCHC	2 cut(s)	329, 1043
SfaNI	GCATC	2 cut(s)	185, 403
Sfr274I	CTCGAG	1 cut(s)	288
SlaI	CTCGAG	1 cut(s)	288
SmiMI	CAYNNNNRTG	1 cut(s)	15
SmlI	CTYRAG	3 cut(s)	288, 347, 1301
SmoI	CTYRAG	3 cut(s)	288, 347, 1301
SsiI	CCGC	4 cut(s)	167, 906, 1031, 1315
SspI	AATATT	1 cut(s)	663
SspMI	CTAG	1 cut(s)	1327
SstI	GAGCTC	1 cut(s)	329
StyD4I	CCNGG	1 cut(s)	627
TaaI	ACNGT	1 cut(s)	694
TaiI	ACGT	2 cut(s)	393, 860
TaqI	TCGA	4 cut(s)	289, 363, 559, 598
TatI	WGTACW	1 cut(s)	582
TauI	GCSGC	1 cut(s)	1318
TfiI	GAWTC	4 cut(s)	284, 556, 632, 1067
TscAI	CASTG	2 cut(s)	813, 1207
TseFI	GTSAC	1 cut(s)	1162
TseI	GCWGC	4 cut(s)	146, 614, 983, 1028
Tsp45I	GTSAC	1 cut(s)	1162
TspDTI	ATGAA	9 cut(s)	255, 367, 489, 588, 670, 749, 1116, 1161, 1203
TspRI	CASTG	2 cut(s)	813, 1207
Vha464I	CTTAAG	2 cut(s)	347, 1301
VspI	ATTAAT	2 cut(s)	443, 447
XapI	RAATTY	6 cut(s)	353, 513, 601, 897, 1122, 1231
XceI	RCATGY	2 cut(s)	143, 592
XhoI	CTCGAG	1 cut(s)	288
XmiI	GTMKAC	1 cut(s)	1152
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	1 cut(s)	1327

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.