Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Reverse (-)

57091471 .. 57092430

Gene Structure 960 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G034670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTAGGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTCCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAGTATTCTCCTCCAGAGACCCCAGAGATCGCGGCAAGGCTCACCCAACGTTTTGATGATACAGAAGAAAAGGACCCCGTAATCAGGCCACTATATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAACTGAAATTCCATTGTGGATTAACCTCTCCCGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

126

Amino Acids

14.68

Weight (kDa)

4.78

Isoelectric Point (pI)

61.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	2 - 91	1.3e-12	Adenylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	141
AccII	CGCG	1 cut(s)	245
AciI	CCGC	1 cut(s)	245
AclI	AACGTT	1 cut(s)	262
AclWI	GGATC	2 cut(s)	126, 179
AcsI	RAATTY	2 cut(s)	101, 348
AcuI	CTGAAG	2 cut(s)	165, 233
AcyI	GRCGYC	1 cut(s)	138
AfiI	CCNNNNNNNGG	2 cut(s)	194, 297
AflII	CTTAAG	1 cut(s)	95
AjuI	GAANNNNNNNTTGG	2 cut(s)	311, 343
AluBI	AGCT	1 cut(s)	75
AluI	AGCT	1 cut(s)	75
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	126, 179
Ama87I	CYCGRG	1 cut(s)	36
AoxI	GGCC	1 cut(s)	299
ApoI	RAATTY	2 cut(s)	101, 348
Asp700I	GAANNNNTTC	2 cut(s)	150, 336
AspA2I	CCTAGG	1 cut(s)	68
AspS9I	GGNCC	1 cut(s)	286
AsuHPI	GGTGA	2 cut(s)	19, 247
AvaI	CYCGRG	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	286
AvrII	CCTAGG	1 cut(s)	68
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BccI	CCATC	2 cut(s)	53, 216
BciVI	GTATCC	1 cut(s)	56
BcoDI	GTCTC	1 cut(s)	224
BfaI	CTAG	1 cut(s)	69
BfrI	CTTAAG	1 cut(s)	95
BfuI	GTATCC	1 cut(s)	56
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	1 cut(s)	246
BlnI	CCTAGG	1 cut(s)	68
BlsI	GCNGC	1 cut(s)	247
Bme18I	GGWCC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	36
BmgT120I	GGNCC	1 cut(s)	286
BmiI	GGNNCC	1 cut(s)	288
BpmI	CTGGAG	2 cut(s)	210, 335
BsaHI	GRCGYC	1 cut(s)	138
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	194, 297
Bse1I	ACTGG	2 cut(s)	199, 318
BseDI	CCNNGG	1 cut(s)	68
BseGI	GGATG	1 cut(s)	64
BseLI	CCNNNNNNNGG	2 cut(s)	194, 297
BseNI	ACTGG	2 cut(s)	199, 318
BseRI	GAGGAG	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	301
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	125
BslI	CCNNNNNNNGG	2 cut(s)	194, 297
BsmAI	GTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	125
BsnI	GGCC	1 cut(s)	301
Bso31I	GGTCTC	1 cut(s)	224
BsoBI	CYCGRG	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	4 cut(s)	118, 184, 201, 240
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	1 cut(s)	301
BspFNI	CGCG	1 cut(s)	245
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	126, 179
BspTI	CTTAAG	1 cut(s)	95
BspTNI	GGTCTC	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	199, 318
BssECI	CCNNGG	1 cut(s)	68
BssMI	GATC	4 cut(s)	118, 184, 201, 240
BssNI	GRCGYC	1 cut(s)	138
BssT1I	CCWWGG	1 cut(s)	68
Bst6I	CTCTTC	1 cut(s)	141
BstACI	GRCGYC	1 cut(s)	138
BstAFI	CTTAAG	1 cut(s)	95
BstC8I	GCNNGC	2 cut(s)	50, 84
BstF5I	GGATG	1 cut(s)	64
BstFNI	CGCG	1 cut(s)	245
BstKTI	GATC	4 cut(s)	121, 187, 204, 243
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	118, 184, 201, 240
BstUI	CGCG	1 cut(s)	245
BstX2I	RGATCY	3 cut(s)	118, 184, 201
BstYI	RGATCY	3 cut(s)	118, 184, 201
BsuI	GTATCC	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	301
BtgZI	GCGATG	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	50, 84
Cfr13I	GGNCC	1 cut(s)	286
CseI	GACGC	1 cut(s)	5
CviJI	RGCY	8 cut(s)	28, 48, 52, 75, 108, 115, 253, 301
CviKI_1	RGCY	8 cut(s)	28, 48, 52, 75, 108, 115, 253, 301
DpnI	GATC	4 cut(s)	120, 186, 203, 242
DpnII	GATC	4 cut(s)	118, 184, 201, 240
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	68
Eco24I	GRGCYC	1 cut(s)	77
Eco31I	GGTCTC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	286
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	2 cut(s)	165, 233
Eco88I	CYCGRG	1 cut(s)	36
EcoICRI	GAGCTC	1 cut(s)	75
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRI	GAATTC	1 cut(s)	101
EcoT14I	CCWWGG	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	77
ErhI	CCWWGG	1 cut(s)	68
FaiI	YATR	3 cut(s)	307, 309, 379
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FaqI	GGGAC	1 cut(s)	125
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	71
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	1 cut(s)	69
GluI	GCNGC	1 cut(s)	246
GsuI	CTGGAG	2 cut(s)	210, 335
HaeIII	GGCC	1 cut(s)	301
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	1 cut(s)	5
Hin1I	GRCGYC	1 cut(s)	138
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	2 cut(s)	32, 151
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	2 cut(s)	19, 247
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	5 cut(s)	36, 38, 134, 227, 372
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	171
HpyCH4IV	ACGT	2 cut(s)	138, 262
HpySE526I	ACGT	2 cut(s)	138, 262
Hsp92I	GRCGYC	1 cut(s)	138
Kzo9I	GATC	4 cut(s)	118, 184, 201, 240
LmnI	GCTCC	1 cut(s)	72
MaeI	CTAG	1 cut(s)	69
MaeII	ACGT	2 cut(s)	138, 262
MaeIII	GTNAC	2 cut(s)	190, 323
MalI	GATC	4 cut(s)	120, 186, 203, 242
MboI	GATC	4 cut(s)	118, 184, 201, 240
MboII	GAAGA	5 cut(s)	122, 158, 186, 290, 344
MfeI	CAATTG	1 cut(s)	87
MflI	RGATCY	3 cut(s)	118, 184, 201
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	3 cut(s)	87, 101, 348
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	234, 377
MroXI	GAANNNNTTC	2 cut(s)	150, 336
MseI	TTAA	2 cut(s)	96, 363
MspCI	CTTAAG	1 cut(s)	95
MspI	CCGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	245
NdeII	GATC	4 cut(s)	118, 184, 201, 240
NlaIV	GGNNCC	1 cut(s)	288
PaeR7I	CTCGAG	1 cut(s)	36
PdmI	GAANNNNTTC	2 cut(s)	150, 336
PfeI	GAWTC	2 cut(s)	32, 151
PkrI	GCNGC	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	77
Psp1406I	AACGTT	1 cut(s)	262
Psp5II	RGGWCCY	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	286
PspPPI	RGGWCCY	1 cut(s)	286
PsuI	RGATCY	3 cut(s)	118, 184, 201
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	96, 363
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	4 cut(s)	118, 184, 201, 240
Sau96I	GGNCC	1 cut(s)	286
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	5 cut(s)	77, 141, 182, 265, 369
Sfr274I	CTCGAG	1 cut(s)	36
SinI	GGWCC	1 cut(s)	286
SlaI	CTCGAG	1 cut(s)	36
SmlI	CTYRAG	2 cut(s)	36, 95
SmoI	CTYRAG	2 cut(s)	36, 95
Sse9I	AATT	3 cut(s)	87, 101, 348
SsiI	CCGC	1 cut(s)	245
SspMI	CTAG	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	77
StyI	CCWWGG	1 cut(s)	68
TaiI	ACGT	2 cut(s)	141, 265
TaqI	TCGA	2 cut(s)	37, 111
TasI	AATT	3 cut(s)	87, 101, 348
TauI	GCSGC	1 cut(s)	248
TfiI	GAWTC	2 cut(s)	32, 151
Tru1I	TTAA	2 cut(s)	96, 363
Tru9I	TTAA	2 cut(s)	96, 363
TspDTI	ATGAA	2 cut(s)	115, 324
Vha464I	CTTAAG	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	286
XapI	RAATTY	2 cut(s)	101, 348
XhoI	CTCGAG	1 cut(s)	36
XmaJI	CCTAGG	1 cut(s)	68
XmnI	GAANNNNTTC	2 cut(s)	150, 336
XspI	CTAG	1 cut(s)	69
ZraI	GACGTC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.