Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Reverse (-)

69587307 .. 69592447

Gene Structure 5141 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035641

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGATAAAAAGGACTAGAATTGCGTACAATCGCAGCAAACAAGATCTTCACAGCTTCCATGTAGTCCTGCAAGGCCTCCTTGACACAAATACCACACCGGGGTCCGAGTATGATTTGATACATGTCGCTGCTGGAGATTTACTTAGAGCAGAAATTGCATCTGGGAGTGAAAATGGGAAGCCTGCAAGGGCGTACATGGACAAAGGACAATTGGTTCCAGATGAAATAATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTACGAGCTCATCGCAAGAAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCATTTGCCTATTAATTAATGTTGTTTTAACCTCCCATATTCTTATTTTGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

161

Amino Acids

17.93

Weight (kDa)

5.51

Isoelectric Point (pI)

53.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	36 - 138	4.1e-26	Adenylate kinase
AAA_17	PF13207	36 - 135	1.2e-14	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	351, 404
AcsI	RAATTY	1 cut(s)	326
AcuI	CTGAAG	1 cut(s)	390
AfaI	GTAC	2 cut(s)	26, 194
AfiI	CCNNNNNNNGG	2 cut(s)	99, 419
AflII	CTTAAG	1 cut(s)	320
AflIII	ACRYGT	1 cut(s)	121
AloI	GAACNNNNNNTCC	2 cut(s)	198, 230
AluBI	AGCT	2 cut(s)	54, 300
AluI	AGCT	2 cut(s)	54, 300
Alw21I	GWGCWC	1 cut(s)	302
AlwI	GGATC	2 cut(s)	351, 404
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	33, 128
ApoI	RAATTY	1 cut(s)	326
AseI	ATTAAT	2 cut(s)	440, 444
Asp700I	GAANNNNTTC	1 cut(s)	375
AspS9I	GGNCC	1 cut(s)	102
AsuC2I	CCSGG	1 cut(s)	99
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	302
Bbv12I	GWGCWC	1 cut(s)	302
BbvI	GCAGC	2 cut(s)	45, 115
BccI	CCATC	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	281
BcnI	CCSGG	1 cut(s)	99
BfaI	CTAG	2 cut(s)	15, 481
BfrI	CTTAAG	1 cut(s)	320
BfuI	GTATCC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	43
BisI	GCNGC	2 cut(s)	34, 129
BlsI	GCNGC	2 cut(s)	35, 130
Bme1390I	CCNGG	1 cut(s)	99
Bme18I	GGWCC	1 cut(s)	102
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	2 cut(s)	103, 216
BmrFI	CCNGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	99
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 419
Bse1I	ACTGG	1 cut(s)	424
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	1 cut(s)	289
BseLI	CCNNNNNNNGG	2 cut(s)	99, 419
BseNI	ACTGG	1 cut(s)	424
BseXI	GCAGC	2 cut(s)	45, 115
BshFI	GGCC	1 cut(s)	75
BsiHKAI	GWGCWC	1 cut(s)	302
BsiHKCI	CYCGRG	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	98, 341
BslI	CCNNNNNNNGG	2 cut(s)	99, 419
BsnI	GGCC	1 cut(s)	75
BsoBI	CYCGRG	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	302
Bsp143I	GATC	4 cut(s)	43, 343, 409, 426
BspANI	GGCC	1 cut(s)	75
BspLI	GGNNCC	2 cut(s)	103, 216
BspPI	GGATC	2 cut(s)	351, 404
BspTI	CTTAAG	1 cut(s)	320
BsrI	ACTGG	1 cut(s)	424
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	4 cut(s)	43, 343, 409, 426
Bst6I	CTCTTC	1 cut(s)	366
BstAFI	CTTAAG	1 cut(s)	320
BstAPI	GCANNNNNTGC	1 cut(s)	155
BstC8I	GCNNGC	2 cut(s)	183, 275
BstDEI	CTNAG	1 cut(s)	143
BstF5I	GGATG	1 cut(s)	289
BstKTI	GATC	4 cut(s)	46, 346, 412, 429
BstMBI	GATC	4 cut(s)	43, 343, 409, 426
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	97
BstV1I	GCAGC	2 cut(s)	45, 115
BstX2I	RGATCY	3 cut(s)	43, 343, 409
BstYI	RGATCY	3 cut(s)	43, 343, 409
BsuI	GTATCC	1 cut(s)	281
BsuRI	GGCC	1 cut(s)	75
BtgZI	GCGATG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	289
Cac8I	GCNNGC	2 cut(s)	183, 275
Cfr13I	GGNCC	1 cut(s)	102
CseI	GACGC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	25, 193
CviAII	CATG	3 cut(s)	59, 122, 196
CviJI	RGCY	9 cut(s)	54, 75, 181, 253, 273, 277, 300, 333, 340
CviKI_1	RGCY	9 cut(s)	54, 75, 181, 253, 273, 277, 300, 333, 340
CviQI	GTAC	2 cut(s)	25, 193
DdeI	CTNAG	1 cut(s)	143
DpnI	GATC	4 cut(s)	45, 345, 411, 428
DpnII	GATC	4 cut(s)	43, 343, 409, 426
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
Ecl136II	GAGCTC	1 cut(s)	300
Eco147I	AGGCCT	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	102
Eco53kI	GAGCTC	1 cut(s)	300
Eco57I	CTGAAG	1 cut(s)	390
Eco88I	CYCGRG	1 cut(s)	261
EcoICRI	GAGCTC	1 cut(s)	300
EcoRI	GAATTC	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	302
FaeI	CATG	3 cut(s)	62, 125, 199
FaiI	YATR	5 cut(s)	60, 111, 123, 197, 465
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 363, 395
FatI	CATG	3 cut(s)	58, 121, 195
Fnu4HI	GCNGC	2 cut(s)	34, 129
FokI	GGATG	1 cut(s)	296
FriOI	GRGCYC	1 cut(s)	302
Fsp4HI	GCNGC	2 cut(s)	34, 129
FspBI	CTAG	2 cut(s)	15, 481
GluI	GCNGC	2 cut(s)	34, 129
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	2 cut(s)	98, 341
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	62, 125, 199
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	2 cut(s)	257, 376
HpaII	CCGG	2 cut(s)	98, 341
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	106
Hpy188III	TCNNGA	5 cut(s)	218, 261, 263, 359, 368
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	1 cut(s)	396
HpyCH4IV	ACGT	1 cut(s)	363
HpyCH4V	TGCA	4 cut(s)	70, 158, 185, 478
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	143
HpySE526I	ACGT	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	62, 125, 199
Kzo9I	GATC	4 cut(s)	43, 343, 409, 426
Lsp1109I	GCAGC	2 cut(s)	45, 115
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	15, 481
MaeII	ACGT	1 cut(s)	363
MaeIII	GTNAC	1 cut(s)	415
MalI	GATC	4 cut(s)	45, 345, 411, 428
MboI	GATC	4 cut(s)	43, 343, 409, 426
MboII	GAAGA	4 cut(s)	38, 347, 383, 411
MfeI	CAATTG	1 cut(s)	209
MflI	RGATCY	3 cut(s)	43, 343, 409
MhlI	GDGCHC	1 cut(s)	302
MluCI	AATT	6 cut(s)	18, 153, 209, 312, 326, 441
MmeI	TCCRAC	1 cut(s)	376
MnlI	CCTC	2 cut(s)	86, 469
MroXI	GAANNNNTTC	1 cut(s)	375
MseI	TTAA	4 cut(s)	321, 440, 444, 455
MspCI	CTTAAG	1 cut(s)	320
MspI	CCGG	2 cut(s)	98, 341
MspR9I	CCNGG	1 cut(s)	99
MunI	CAATTG	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	155
NciI	CCSGG	1 cut(s)	99
NdeII	GATC	4 cut(s)	43, 343, 409, 426
NlaIII	CATG	3 cut(s)	62, 125, 199
NlaIV	GGNNCC	2 cut(s)	103, 216
NspI	RCATGY	1 cut(s)	125
PacI	TTAATTAA	1 cut(s)	444
PaeR7I	CTCGAG	1 cut(s)	261
PceI	AGGCCT	1 cut(s)	75
PciI	ACATGT	1 cut(s)	121
PdmI	GAANNNNTTC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	257, 376
PkrI	GCNGC	2 cut(s)	35, 130
PscI	ACATGT	1 cut(s)	121
PshBI	ATTAAT	2 cut(s)	440, 444
Psp124BI	GAGCTC	1 cut(s)	302
PspN4I	GGNNCC	2 cut(s)	103, 216
PspPI	GGNCC	1 cut(s)	102
PsuI	RGATCY	3 cut(s)	43, 343, 409
RsaI	GTAC	2 cut(s)	26, 194
RsaNI	GTAC	2 cut(s)	25, 193
SacI	GAGCTC	1 cut(s)	302
SaqAI	TTAA	4 cut(s)	321, 440, 444, 455
SatI	GCNGC	2 cut(s)	34, 129
Sau3AI	GATC	4 cut(s)	43, 343, 409, 426
Sau96I	GGNCC	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	99
SduI	GDGCHC	1 cut(s)	302
SetI	ASST	5 cut(s)	56, 302, 366, 407, 461
SfaNI	GCATC	1 cut(s)	167
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	102
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	2 cut(s)	261, 320
SmoI	CTYRAG	2 cut(s)	261, 320
Sse9I	AATT	6 cut(s)	18, 153, 209, 312, 326, 441
SseBI	AGGCCT	1 cut(s)	75
SspMI	CTAG	2 cut(s)	15, 481
SstI	GAGCTC	1 cut(s)	302
StuI	AGGCCT	1 cut(s)	75
StyD4I	CCNGG	1 cut(s)	97
TaiI	ACGT	1 cut(s)	366
TaqI	TCGA	2 cut(s)	262, 336
TasI	AATT	6 cut(s)	18, 153, 209, 312, 326, 441
TfiI	GAWTC	2 cut(s)	257, 376
Tru1I	TTAA	4 cut(s)	321, 440, 444, 455
Tru9I	TTAA	4 cut(s)	321, 440, 444, 455
TseI	GCWGC	2 cut(s)	33, 128
TspDTI	ATGAA	2 cut(s)	237, 340
Vha464I	CTTAAG	1 cut(s)	320
VpaK11BI	GGWCC	1 cut(s)	102
VspI	ATTAAT	2 cut(s)	440, 444
XapI	RAATTY	1 cut(s)	326
XceI	RCATGY	1 cut(s)	125
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	375
XspI	CTAG	2 cut(s)	15, 481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.