Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Reverse (-)

46565324 .. 46568586

Gene Structure 3263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG361700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGACTGACCTGGCGGTGCGGTGTGCTTCTAAGGCTGAGCCGCTCAGAGTTATGATATCCGGGGCGCCTGCTTCGGGTAAAGGAACGCAATGCGATCTCATTACTCAGAAATATGATTTGGTACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGCGAAAATGGGAAGCGTGCAAGGGCCTACATGGACAAAGGACAATTGGTGCCAGATGAAATAGTTGTCATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCCCTAGGAGCTCATCGCAACCAATTGCTCTTAAGGAATTCAGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGGAGAGATTCTTGTTGACAGTAGTTGGAAGAAGAGGGCTCACCCAGCGTTTTGATGATACAGAAGAAAAGGTGAAACTTCGATTGCACACTCATCATCAAAATGTGGAGGCAGTACTTTCATTATATGAAGACATAACCCTTAAGGTGGACGGGAGTGGTACCAAGGATGATGTGTTTGCCCAAATTGATGCCGCACTGGCAAAGCTTCTTGAGAAAAAGCGGGCTACCACAGAACCTTTGGCAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

210

Amino Acids

23.31

Weight (kDa)

8.5

Isoelectric Point (pI)

31.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	19 - 172	1.1e-38	Adenylate kinase
AAA_17	PF13207	21 - 112	1.2e-20	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	542
AccB1I	GGYRCC	3 cut(s)	64, 217, 542
AccBSI	CCGCTC	2 cut(s)	43, 152
AciI	CCGC	6 cut(s)	14, 19, 41, 152, 576, 604
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	1 cut(s)	340
AcyI	GRCGYC	1 cut(s)	65
AfaI	GTAC	3 cut(s)	123, 498, 544
AfiI	CCNNNNNNNGG	2 cut(s)	74, 529
AflII	CTTAAG	2 cut(s)	334, 524
AflIII	ACRYGT	1 cut(s)	124
AjnI	CCWGG	2 cut(s)	9, 381
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	4 cut(s)	314, 347, 589, 629
AluI	AGCT	4 cut(s)	314, 347, 589, 629
Alw21I	GWGCWC	1 cut(s)	316
AlwI	GGATC	1 cut(s)	365
Ama87I	CYCGRG	1 cut(s)	273
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	131, 626
ApoI	RAATTY	1 cut(s)	340
Asp718I	GGTACC	1 cut(s)	542
AspA2I	CCTAGG	1 cut(s)	307
AspLEI	GCGC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	3 cut(s)	256, 415, 466
AvaI	CYCGRG	1 cut(s)	273
AvrII	CCTAGG	1 cut(s)	307
BanI	GGYRCC	3 cut(s)	64, 217, 542
BanII	GRGCYC	2 cut(s)	316, 423
BbsI	GAAGAC	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	235, 290
BciT130I	CCWGG	2 cut(s)	11, 383
BciVI	GTATCC	1 cut(s)	293
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	68
BfrI	CTTAAG	2 cut(s)	334, 524
BfuI	GTATCC	1 cut(s)	293
BglI	GCCNNNNNGGC	1 cut(s)	581
BisI	GCNGC	4 cut(s)	41, 132, 576, 627
BlnI	CCTAGG	1 cut(s)	307
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	4 cut(s)	42, 133, 577, 628
BmcAI	AGTACT	1 cut(s)	498
Bme1390I	CCNGG	3 cut(s)	11, 61, 383
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	192
BmiI	GGNNCC	3 cut(s)	66, 219, 544
BmrFI	CCNGG	3 cut(s)	11, 61, 383
BmsI	GCATC	2 cut(s)	170, 562
BpiI	GAAGAC	1 cut(s)	519
BpmI	CTGGAG	2 cut(s)	156, 404
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	65
BsaJI	CCNNGG	3 cut(s)	60, 307, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 529
Bse1I	ACTGG	1 cut(s)	585
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	11, 383
BseDI	CCNNGG	3 cut(s)	60, 307, 546
BseGI	GGATG	2 cut(s)	301, 556
BseLI	CCNNNNNNNGG	2 cut(s)	74, 529
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	3 cut(s)	27, 58, 119
BseNI	ACTGG	1 cut(s)	585
BseXI	GCAGC	1 cut(s)	118
BseYI	CCCAGC	1 cut(s)	426
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	3 cut(s)	64, 217, 542
BsiHKAI	GWGCWC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	2 cut(s)	60, 355
BslI	CCNNNNNNNGG	2 cut(s)	74, 529
BsnI	GGCC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	273
Bsp1286I	GDGCHC	2 cut(s)	316, 423
Bsp143I	GATC	2 cut(s)	94, 357
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	6 cut(s)	14, 19, 41, 152, 576, 604
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	3 cut(s)	28, 57, 118
BspHI	TCATGA	1 cut(s)	237
BspLI	GGNNCC	3 cut(s)	66, 219, 544
BspPI	GGATC	1 cut(s)	365
BspT107I	GGYRCC	3 cut(s)	64, 217, 542
BspTI	CTTAAG	2 cut(s)	334, 524
BsrBI	CCGCTC	2 cut(s)	43, 152
BsrDI	GCAATG	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	3 cut(s)	60, 307, 546
BssMI	GATC	2 cut(s)	94, 357
BssNI	GRCGYC	1 cut(s)	65
BssT1I	CCWWGG	2 cut(s)	307, 546
Bst2UI	CCWGG	2 cut(s)	11, 383
Bst4CI	ACNGT	1 cut(s)	403
Bst6I	CTCTTC	1 cut(s)	409
BstACI	GRCGYC	1 cut(s)	65
BstAFI	CTTAAG	2 cut(s)	334, 524
BstC8I	GCNNGC	4 cut(s)	69, 186, 287, 606
BstDEI	CTNAG	6 cut(s)	30, 36, 44, 105, 146, 630
BstF5I	GGATG	2 cut(s)	301, 556
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	1 cut(s)	67
BstKTI	GATC	2 cut(s)	97, 360
BstMBI	GATC	2 cut(s)	94, 357
BstMWI	GCNNNNNNNGC	4 cut(s)	32, 158, 427, 581
BstNI	CCWGG	2 cut(s)	11, 383
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	9, 59, 381
BstV1I	GCAGC	1 cut(s)	118
BstV2I	GAAGAC	1 cut(s)	519
BstX2I	RGATCY	1 cut(s)	357
BstYI	RGATCY	1 cut(s)	357
BsuI	GTATCC	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	194
BtgZI	GCGATG	1 cut(s)	302
BtsCI	GGATG	2 cut(s)	301, 556
BtsIMutI	CAGTG	1 cut(s)	578
Cac8I	GCNNGC	4 cut(s)	69, 186, 287, 606
CciI	TCATGA	1 cut(s)	237
CfoI	GCGC	1 cut(s)	67
Cfr13I	GGNCC	1 cut(s)	192
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	3 cut(s)	122, 497, 543
CviAII	CATG	3 cut(s)	125, 199, 238
CviQI	GTAC	3 cut(s)	122, 497, 543
DdeI	CTNAG	6 cut(s)	30, 36, 44, 105, 146, 630
DinI	GGCGCC	1 cut(s)	66
DpnI	GATC	2 cut(s)	96, 359
DpnII	GATC	2 cut(s)	94, 357
Eam1104I	CTCTTC	1 cut(s)	409
EarI	CTCTTC	1 cut(s)	409
Ecl136II	GAGCTC	1 cut(s)	314
Eco130I	CCWWGG	2 cut(s)	307, 546
Eco24I	GRGCYC	2 cut(s)	316, 423
Eco32I	GATATC	1 cut(s)	57
Eco53kI	GAGCTC	1 cut(s)	314
Eco88I	CYCGRG	1 cut(s)	273
EcoICRI	GAGCTC	1 cut(s)	314
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRI	GAATTC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	9, 381
EcoRV	GATATC	1 cut(s)	57
EcoT14I	CCWWGG	2 cut(s)	307, 546
EcoT38I	GRGCYC	2 cut(s)	316, 423
EgeI	GGCGCC	1 cut(s)	66
EheI	GGCGCC	1 cut(s)	66
ErhI	CCWWGG	2 cut(s)	307, 546
FaeI	CATG	3 cut(s)	128, 202, 241
FaiI	YATR	8 cut(s)	53, 114, 126, 200, 239, 508, 510, 518
FatI	CATG	3 cut(s)	124, 198, 237
FauI	CCCGC	1 cut(s)	597
Fnu4HI	GCNGC	4 cut(s)	41, 132, 576, 627
FokI	GGATG	2 cut(s)	308, 563
FriOI	GRGCYC	2 cut(s)	316, 423
Fsp4HI	GCNGC	4 cut(s)	41, 132, 576, 627
FspBI	CTAG	1 cut(s)	308
GlaI	GCGC	1 cut(s)	66
GluI	GCNGC	4 cut(s)	41, 132, 576, 627
GsaI	CCCAGC	1 cut(s)	430
GsuI	CTGGAG	2 cut(s)	156, 404
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	2 cut(s)	60, 355
HgaI	GACGC	1 cut(s)	242
HhaI	GCGC	1 cut(s)	67
Hin1I	GRCGYC	1 cut(s)	65
Hin1II	CATG	3 cut(s)	128, 202, 241
Hin6I	GCGC	1 cut(s)	65
HinP1I	GCGC	1 cut(s)	65
HincII	GTYRAC	1 cut(s)	399
HindII	GTYRAC	1 cut(s)	399
HindIII	AAGCTT	1 cut(s)	587
HinfI	GANTC	2 cut(s)	269, 390
HpaII	CCGG	2 cut(s)	60, 355
HphI	GGTGA	3 cut(s)	256, 415, 466
Hpy166II	GTNNAC	2 cut(s)	399, 532
Hpy188I	TCNGA	2 cut(s)	47, 108
Hpy188III	TCNNGA	5 cut(s)	238, 273, 275, 373, 593
Hpy8I	GTNNAC	2 cut(s)	399, 532
HpyCH4III	ACNGT	1 cut(s)	403
HpyCH4IV	ACGT	1 cut(s)	377
HpyCH4V	TGCA	3 cut(s)	161, 188, 469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	32, 158, 427, 581
HpyF3I	CTNAG	6 cut(s)	30, 36, 44, 105, 146, 630
HpySE526I	ACGT	1 cut(s)	377
Hsp92I	GRCGYC	1 cut(s)	65
Hsp92II	CATG	3 cut(s)	128, 202, 241
HspAI	GCGC	1 cut(s)	65
KasI	GGCGCC	1 cut(s)	64
KpnI	GGTACC	1 cut(s)	546
Kzo9I	GATC	2 cut(s)	94, 357
LmnI	GCTCC	2 cut(s)	168, 311
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	2 cut(s)	170, 562
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	1 cut(s)	377
MalI	GATC	2 cut(s)	96, 359
MbiI	CCGCTC	2 cut(s)	43, 152
MboI	GATC	2 cut(s)	94, 357
MboII	GAAGA	5 cut(s)	361, 423, 426, 458, 524
MfeI	CAATTG	2 cut(s)	212, 326
MflI	RGATCY	1 cut(s)	357
MhlI	GDGCHC	2 cut(s)	316, 423
MluCI	AATT	5 cut(s)	156, 212, 326, 340, 567
Mly113I	GGCGCC	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	2 cut(s)	410, 484
MseI	TTAA	2 cut(s)	335, 525
MslI	CAYNNNNRTG	2 cut(s)	242, 483
MspCI	CTTAAG	2 cut(s)	334, 524
MspI	CCGG	2 cut(s)	60, 355
MspR9I	CCNGG	3 cut(s)	11, 61, 383
MunI	CAATTG	2 cut(s)	212, 326
MvaI	CCWGG	2 cut(s)	11, 383
MwoI	GCNNNNNNNGC	4 cut(s)	32, 158, 427, 581
NarI	GGCGCC	1 cut(s)	65
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	94, 357
NlaIII	CATG	3 cut(s)	128, 202, 241
NlaIV	GGNNCC	3 cut(s)	66, 219, 544
NspI	RCATGY	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	273
PagI	TCATGA	1 cut(s)	237
PciI	ACATGT	1 cut(s)	124
PfeI	GAWTC	2 cut(s)	269, 390
PfoI	TCCNGGA	1 cut(s)	381
PkrI	GCNGC	4 cut(s)	42, 133, 577, 628
PluTI	GGCGCC	1 cut(s)	68
PscI	ACATGT	1 cut(s)	124
Psp124BI	GAGCTC	1 cut(s)	316
Psp6I	CCWGG	2 cut(s)	9, 381
PspFI	CCCAGC	1 cut(s)	426
PspGI	CCWGG	2 cut(s)	9, 381
PspN4I	GGNNCC	3 cut(s)	66, 219, 544
PspPI	GGNCC	1 cut(s)	192
PsuI	RGATCY	1 cut(s)	357
RsaI	GTAC	3 cut(s)	123, 498, 544
RsaNI	GTAC	3 cut(s)	122, 497, 543
RseI	CAYNNNNRTG	2 cut(s)	242, 483
SacI	GAGCTC	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	335, 525
SatI	GCNGC	4 cut(s)	41, 132, 576, 627
Sau3AI	GATC	2 cut(s)	94, 357
Sau96I	GGNCC	1 cut(s)	192
ScaI	AGTACT	1 cut(s)	498
ScrFI	CCNGG	3 cut(s)	11, 61, 383
SduI	GDGCHC	2 cut(s)	316, 423
SetI	ASST	9 cut(s)	12, 316, 349, 380, 456, 531, 591, 622, 631
SfaNI	GCATC	2 cut(s)	170, 562
SfoI	GGCGCC	1 cut(s)	66
Sfr274I	CTCGAG	1 cut(s)	273
SlaI	CTCGAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	2 cut(s)	242, 483
SmlI	CTYRAG	4 cut(s)	273, 334, 524, 593
SmoI	CTYRAG	4 cut(s)	273, 334, 524, 593
Sse9I	AATT	5 cut(s)	156, 212, 326, 340, 567
SsiI	CCGC	6 cut(s)	14, 19, 41, 152, 576, 604
SspDI	GGCGCC	1 cut(s)	64
SspMI	CTAG	1 cut(s)	308
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	3 cut(s)	9, 59, 381
StyI	CCWWGG	2 cut(s)	307, 546
TaaI	ACNGT	1 cut(s)	403
TaiI	ACGT	1 cut(s)	380
TaqI	TCGA	3 cut(s)	274, 350, 463
TasI	AATT	5 cut(s)	156, 212, 326, 340, 567
TatI	WGTACW	1 cut(s)	496
TauI	GCSGC	2 cut(s)	43, 578
TfiI	GAWTC	2 cut(s)	269, 390
Tru1I	TTAA	2 cut(s)	335, 525
Tru9I	TTAA	2 cut(s)	335, 525
TscAI	CASTG	1 cut(s)	585
TseI	GCWGC	2 cut(s)	131, 626
TspDTI	ATGAA	4 cut(s)	240, 354, 492, 525
TspRI	CASTG	1 cut(s)	585
Vha464I	CTTAAG	2 cut(s)	334, 524
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	128
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XhoI	CTCGAG	1 cut(s)	273
XmaJI	CCTAGG	1 cut(s)	307
XspI	CTAG	1 cut(s)	308
ZrmI	AGTACT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.