Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Reverse (-)

55911055 .. 55911944

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGACAAAGGACAATTGGTTCCAGATGAAATAGTTGTTATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTAGGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCAGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTCCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAGTATTCTCCTCCAGAGACCCCAGAGATCGCGGCAAGGCTCACCCAACGTTTTGATGATACAGAAGAAAAGTTATTATTCAAATTTATTCTTCCTACTTGTAATACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

120

Amino Acids

13.85

Weight (kDa)

4.91

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	1 - 104	2.9e-20	Adenylate kinase
AAA_17	PF13207	1 - 73	7e-09	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
AccII	CGCG	1 cut(s)	284
AciI	CCGC	1 cut(s)	284
AclI	AACGTT	1 cut(s)	301
AclWI	GGATC	2 cut(s)	165, 218
AcsI	RAATTY	2 cut(s)	140, 335
AcuI	CTGAAG	2 cut(s)	204, 272
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	233
AflII	CTTAAG	1 cut(s)	134
AgsI	TTSAA	1 cut(s)	334
AloI	GAACNNNNNNTCC	1 cut(s)	35
AluBI	AGCT	2 cut(s)	114, 147
AluI	AGCT	2 cut(s)	114, 147
Alw21I	GWGCWC	1 cut(s)	116
Alw26I	GTCTC	1 cut(s)	263
AlwI	GGATC	2 cut(s)	165, 218
Ama87I	CYCGRG	1 cut(s)	75
ApoI	RAATTY	2 cut(s)	140, 335
Asp700I	GAANNNNTTC	1 cut(s)	189
AspA2I	CCTAGG	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	58, 286
AvaI	CYCGRG	1 cut(s)	75
AvrII	CCTAGG	1 cut(s)	107
BanII	GRGCYC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	116
BccI	CCATC	3 cut(s)	37, 92, 255
BciVI	GTATCC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	108
BfrI	CTTAAG	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	95
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	1 cut(s)	285
BlnI	CCTAGG	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	286
BmeT110I	CYCGRG	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	263
BsaJI	CCNNGG	1 cut(s)	107
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	238
BseDI	CCNNGG	1 cut(s)	107
BseGI	GGATG	1 cut(s)	103
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	1 cut(s)	252
Bsh1236I	CGCG	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	116
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	155
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	263
BsoBI	CYCGRG	1 cut(s)	75
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	4 cut(s)	157, 223, 240, 279
BspACI	CCGC	1 cut(s)	284
BspFNI	CGCG	1 cut(s)	284
BspLI	GGNNCC	1 cut(s)	21
BspPI	GGATC	2 cut(s)	165, 218
BspTI	CTTAAG	1 cut(s)	134
BspTNI	GGTCTC	1 cut(s)	263
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	1 cut(s)	107
BssMI	GATC	4 cut(s)	157, 223, 240, 279
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	107
Bst6I	CTCTTC	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	134
BstC8I	GCNNGC	2 cut(s)	89, 123
BstF5I	GGATG	1 cut(s)	103
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	4 cut(s)	160, 226, 243, 282
BstMAI	GTCTC	1 cut(s)	263
BstMBI	GATC	4 cut(s)	157, 223, 240, 279
BstUI	CGCG	1 cut(s)	284
BstX2I	RGATCY	3 cut(s)	157, 223, 240
BstYI	RGATCY	3 cut(s)	157, 223, 240
BsuI	GTATCC	1 cut(s)	95
BtgZI	GCGATG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	89, 123
CseI	GACGC	1 cut(s)	44
CviJI	RGCY	7 cut(s)	67, 87, 91, 114, 147, 154, 292
CviKI_1	RGCY	7 cut(s)	67, 87, 91, 114, 147, 154, 292
DpnI	GATC	4 cut(s)	159, 225, 242, 281
DpnII	GATC	4 cut(s)	157, 223, 240, 279
Eam1104I	CTCTTC	1 cut(s)	180
EarI	CTCTTC	1 cut(s)	180
Ecl136II	GAGCTC	1 cut(s)	114
Eco130I	CCWWGG	1 cut(s)	107
Eco24I	GRGCYC	1 cut(s)	116
Eco31I	GGTCTC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	114
Eco57I	CTGAAG	2 cut(s)	204, 272
Eco88I	CYCGRG	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	114
EcoRI	GAATTC	1 cut(s)	140
EcoT14I	CCWWGG	1 cut(s)	107
EcoT38I	GRGCYC	1 cut(s)	116
ErhI	CCWWGG	1 cut(s)	107
FaiI	YATR	1 cut(s)	41
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FaqI	GGGAC	1 cut(s)	164
Fnu4HI	GCNGC	1 cut(s)	285
FokI	GGATG	1 cut(s)	110
FriOI	GRGCYC	1 cut(s)	116
Fsp4HI	GCNGC	1 cut(s)	285
FspBI	CTAG	1 cut(s)	108
GluI	GCNGC	1 cut(s)	285
GsuI	CTGGAG	1 cut(s)	249
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	44
Hin1I	GRCGYC	1 cut(s)	177
HincII	GTYRAC	1 cut(s)	199
HindII	GTYRAC	1 cut(s)	199
HinfI	GANTC	2 cut(s)	71, 190
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	58, 286
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	5 cut(s)	23, 75, 77, 173, 266
Hpy8I	GTNNAC	1 cut(s)	199
HpyAV	CCTTC	1 cut(s)	210
HpyCH4IV	ACGT	2 cut(s)	177, 301
HpySE526I	ACGT	2 cut(s)	177, 301
Hsp92I	GRCGYC	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	157, 223, 240, 279
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	9 cut(s)	36, 73, 81, 168, 195, 219, 240, 279, 288
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	2 cut(s)	177, 301
MaeIII	GTNAC	1 cut(s)	229
MalI	GATC	4 cut(s)	159, 225, 242, 281
MboI	GATC	4 cut(s)	157, 223, 240, 279
MboII	GAAGA	5 cut(s)	161, 197, 225, 329, 335
MfeI	CAATTG	2 cut(s)	14, 126
MflI	RGATCY	3 cut(s)	157, 223, 240
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	4 cut(s)	14, 126, 140, 335
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	189
MseI	TTAA	1 cut(s)	135
MspCI	CTTAAG	1 cut(s)	134
MspI	CCGG	1 cut(s)	155
MunI	CAATTG	2 cut(s)	14, 126
MvnI	CGCG	1 cut(s)	284
NdeII	GATC	4 cut(s)	157, 223, 240, 279
NlaIV	GGNNCC	1 cut(s)	21
PaeR7I	CTCGAG	1 cut(s)	75
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	2 cut(s)	71, 190
PkrI	GCNGC	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	116
Psp1406I	AACGTT	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	21
PsuI	RGATCY	3 cut(s)	157, 223, 240
SacI	GAGCTC	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	135
SatI	GCNGC	1 cut(s)	285
Sau3AI	GATC	4 cut(s)	157, 223, 240, 279
SduI	GDGCHC	1 cut(s)	116
SetI	ASST	5 cut(s)	116, 149, 180, 221, 304
Sfr274I	CTCGAG	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	75
SmlI	CTYRAG	2 cut(s)	75, 134
SmoI	CTYRAG	2 cut(s)	75, 134
Sse9I	AATT	4 cut(s)	14, 126, 140, 335
SsiI	CCGC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	108
SstI	GAGCTC	1 cut(s)	116
StyI	CCWWGG	1 cut(s)	107
TaiI	ACGT	2 cut(s)	180, 304
TaqI	TCGA	2 cut(s)	76, 150
TasI	AATT	4 cut(s)	14, 126, 140, 335
TauI	GCSGC	1 cut(s)	287
TfiI	GAWTC	2 cut(s)	71, 190
Tru1I	TTAA	1 cut(s)	135
Tru9I	TTAA	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	42, 154
Vha464I	CTTAAG	1 cut(s)	134
XapI	RAATTY	2 cut(s)	140, 335
XhoI	CTCGAG	1 cut(s)	75
XmaJI	CCTAGG	1 cut(s)	107
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	1 cut(s)	108
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.