Rroxscaffold_3G00232500

Belongs to the adenylate kinase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
18144207 .. 18150827
6621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232500.1

Sequence Viewer

Length: 903 bp
ATGGCTTGCCATGTCAATTTGGTTCCCCAATCCATGGCCACAGCGTCAGCTAAACCCAAAGCTCCTCCGCCTCCCGCCGCGTGTTCCATTTCAAAGCCATTCATCTCCGCAAAGCTTGTTCACTCGTCGCAATCCTCTTTCGTTTCCACCTTCTCTCCCTCTCGCCCTCAAACCCTAACTCCTCTCCGTTCCAGCAGATCTATGACTGACCTGGCGGTGCGGTGTGCTTCTAAGGCTGAGCCGCCCAGAATTATGATATCCGGGCCGCCCGCTTCGGGTAAAGGAACGCAATGCGAGCTCATTACTCAGAAATATGATTTGGTACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAATGAAAATGGGAAGCGTGCAAGGGCCTACATGGACAAAGGACAATTGGTGCCAGATGAAATAGTTGTCATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTAGGAGCTCATCACAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTTCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAGTATTCTCCTCCAGAGACTCCAGAGATCGCGGCAAGGCTCACCCAGCGTTTTGATGATACAGAAGAAAAGGTGAAACTTCGATTGCACACTCATCATCAAAATGTGGAGGCAGTACTTTCATTATATGAAGACATAACCCTTAAGGTGGACGGGAGTGTTACCAAGGATGATGTGTTTGCCCAAATTGATGGTGCACTGGCAAAGCTTCTTGAGAAAAAGCGGGCTACCACAGAATCTTTGGCAGCTTAG

Protein Analysis

300

Amino Acids

32.88

Weight (kDa)

8.26

Isoelectric Point (pI)

54.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADK PF00406 86 - 262 1.8e-48 Adenylate kinase
AAA_17 PF13207 88 - 206 1.9e-26 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 418
AccB7I CCANNNNNTGG 1 cut(s) 34
AccBSI CCGCTC 1 cut(s) 353
AccII CGCG 2 cut(s) 80, 683
AclWI GGATC 2 cut(s) 564, 617
AcoI YGGCCR 1 cut(s) 36
AcsI RAATTY 1 cut(s) 539
AcuI CTGAAG 2 cut(s) 603, 671
AfaI GTAC 2 cut(s) 324, 768
AfiI CCNNNNNNNGG 4 cut(s) 34, 275, 632, 799
AflII CTTAAG 2 cut(s) 533, 794
AflIII ACRYGT 1 cut(s) 325
AgsI TTSAA 1 cut(s) 93
AjnI CCWGG 1 cut(s) 210
AjuI GAANNNNNNNTTGG 2 cut(s) 302, 334
AluBI AGCT 7 cut(s) 50, 62, 115, 298, 513, 859, 899
AluI AGCT 7 cut(s) 50, 62, 115, 298, 513, 859, 899
Alw21I GWGCWC 3 cut(s) 300, 515, 850
Alw26I GTCTC 1 cut(s) 662
Alw44I GTGCAC 1 cut(s) 846
AlwI GGATC 2 cut(s) 564, 617
Ama87I CYCGRG 1 cut(s) 474
AoxI GGCC 3 cut(s) 36, 263, 393
ApaLI GTGCAC 1 cut(s) 846
ApeKI GCWGC 2 cut(s) 332, 896
ApoI RAATTY 1 cut(s) 539
Asp700I GAANNNNTTC 1 cut(s) 588
AspA2I CCTAGG 1 cut(s) 506
AspS9I GGNCC 2 cut(s) 263, 393
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 3 cut(s) 457, 685, 736
AvaI CYCGRG 1 cut(s) 474
AvrII CCTAGG 1 cut(s) 506
BaeGI GKGCMC 1 cut(s) 850
BalI TGGCCA 1 cut(s) 38
BanI GGYRCC 1 cut(s) 418
BanII GRGCYC 2 cut(s) 300, 515
BbsI GAAGAC 1 cut(s) 789
Bbv12I GWGCWC 3 cut(s) 300, 515, 850
BbvI GCAGC 1 cut(s) 319
BccI CCATC 4 cut(s) 436, 491, 654, 836
BciT130I CCWGG 1 cut(s) 212
BciVI GTATCC 1 cut(s) 494
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 662
BfaI CTAG 1 cut(s) 507
BfrI CTTAAG 2 cut(s) 533, 794
BfuI GTATCC 1 cut(s) 494
BglII AGATCT 2 cut(s) 197, 639
BisI GCNGC 6 cut(s) 78, 242, 266, 333, 684, 897
BlnI CCTAGG 1 cut(s) 506
BlpI GCTNAGC 1 cut(s) 237
BlsI GCNGC 6 cut(s) 79, 243, 267, 334, 685, 898
BmcAI AGTACT 1 cut(s) 768
Bme1390I CCNGG 2 cut(s) 212, 262
BmeT110I CYCGRG 1 cut(s) 474
BmgT120I GGNCC 2 cut(s) 263, 393
BmiI GGNNCC 2 cut(s) 24, 420
BmrFI CCNGG 2 cut(s) 212, 262
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 789
BpmI CTGGAG 3 cut(s) 357, 648, 657
Bpu1102I GCTNAGC 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 884
BpuMI CCSGG 1 cut(s) 262
BsaJI CCNNGG 3 cut(s) 33, 506, 816
BsaXI ACNNNNNCTCC 4 cut(s) 139, 163, 169, 193
Bsc4I CCNNNNNNNGG 4 cut(s) 34, 275, 632, 799
Bse1I ACTGG 2 cut(s) 637, 855
Bse3DI GCAATG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 212
BseDI CCNNGG 3 cut(s) 33, 506, 816
BseGI GGATG 2 cut(s) 502, 826
BseLI CCNNNNNNNGG 4 cut(s) 34, 275, 632, 799
BseMI GCAATG 1 cut(s) 296
BseMII CTCAG 2 cut(s) 228, 320
BseNI ACTGG 2 cut(s) 637, 855
BseRI GAGGAG 3 cut(s) 54, 171, 651
BseSI GKGCMC 1 cut(s) 850
BseXI GCAGC 1 cut(s) 319
BseYI CCCAGC 1 cut(s) 696
Bsh1236I CGCG 2 cut(s) 80, 683
BshFI GGCC 3 cut(s) 38, 265, 395
BshNI GGYRCC 1 cut(s) 418
BsiHKAI GWGCWC 3 cut(s) 300, 515, 850
BsiHKCI CYCGRG 1 cut(s) 474
BsiSI CCGG 2 cut(s) 261, 554
BslI CCNNNNNNNGG 4 cut(s) 34, 275, 632, 799
BsmAI GTCTC 1 cut(s) 662
BsnI GGCC 3 cut(s) 38, 265, 395
BsoBI CYCGRG 1 cut(s) 474
Bsp1286I GDGCHC 3 cut(s) 300, 515, 850
Bsp143I GATC 5 cut(s) 197, 556, 622, 639, 678
Bsp1720I GCTNAGC 1 cut(s) 237
Bsp19I CCATGG 1 cut(s) 33
BspANI GGCC 3 cut(s) 38, 265, 395
BspCNI CTCAG 2 cut(s) 229, 319
BspFNI CGCG 2 cut(s) 80, 683
BspHI TCATGA 1 cut(s) 438
BspLI GGNNCC 2 cut(s) 24, 420
BspPI GGATC 2 cut(s) 564, 617
BspT107I GGYRCC 1 cut(s) 418
BspTI CTTAAG 2 cut(s) 533, 794
BsrBI CCGCTC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 296
BsrI ACTGG 2 cut(s) 637, 855
BssECI CCNNGG 3 cut(s) 33, 506, 816
BssMI GATC 5 cut(s) 197, 556, 622, 639, 678
BssT1I CCWWGG 3 cut(s) 33, 506, 816
Bst2UI CCWGG 1 cut(s) 212
Bst6I CTCTTC 1 cut(s) 579
BstAFI CTTAAG 2 cut(s) 533, 794
BstC8I GCNNGC 6 cut(s) 7, 270, 296, 387, 488, 876
BstDEI CTNAG 5 cut(s) 231, 237, 306, 347, 900
BstDSI CCRYGG 1 cut(s) 33
BstF5I GGATG 2 cut(s) 502, 826
BstFNI CGCG 2 cut(s) 80, 683
BstKTI GATC 5 cut(s) 200, 559, 625, 642, 681
BstMAI GTCTC 1 cut(s) 662
BstMBI GATC 5 cut(s) 197, 556, 622, 639, 678
BstMWI GCNNNNNNNGC 4 cut(s) 233, 295, 359, 697
BstNI CCWGG 1 cut(s) 212
BstNSI RCATGY 1 cut(s) 329
BstSCI CCNGG 2 cut(s) 210, 260
BstSLI GKGCMC 1 cut(s) 850
BstUI CGCG 2 cut(s) 80, 683
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 1 cut(s) 789
BstX2I RGATCY 4 cut(s) 197, 556, 622, 639
BstXI CCANNNNNNTGG 1 cut(s) 842
BstYI RGATCY 4 cut(s) 197, 556, 622, 639
BsuI GTATCC 1 cut(s) 494
BsuRI GGCC 3 cut(s) 38, 265, 395
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 2 cut(s) 502, 826
BtsIMutI CAGTG 1 cut(s) 848
Cac8I GCNNGC 6 cut(s) 7, 270, 296, 387, 488, 876
CciI TCATGA 1 cut(s) 438
Cfr13I GGNCC 2 cut(s) 263, 393
CseI GACGC 2 cut(s) 33, 443
Csp6I GTAC 2 cut(s) 323, 767
CviAII CATG 5 cut(s) 11, 34, 326, 400, 439
CviQI GTAC 2 cut(s) 323, 767
DdeI CTNAG 5 cut(s) 231, 237, 306, 347, 900
DpnI GATC 5 cut(s) 199, 558, 624, 641, 680
DpnII GATC 5 cut(s) 197, 556, 622, 639, 678
EaeI YGGCCR 1 cut(s) 36
Eam1104I CTCTTC 1 cut(s) 579
EarI CTCTTC 1 cut(s) 579
EciI GGCGGA 1 cut(s) 57
Ecl136II GAGCTC 2 cut(s) 298, 513
Eco130I CCWWGG 3 cut(s) 33, 506, 816
Eco24I GRGCYC 2 cut(s) 300, 515
Eco32I GATATC 1 cut(s) 258
Eco53kI GAGCTC 2 cut(s) 298, 513
Eco57I CTGAAG 2 cut(s) 603, 671
Eco88I CYCGRG 1 cut(s) 474
EcoICRI GAGCTC 2 cut(s) 298, 513
EcoO109I RGGNCCY 1 cut(s) 393
EcoRI GAATTC 1 cut(s) 539
EcoRII CCWGG 1 cut(s) 210
EcoRV GATATC 1 cut(s) 258
EcoT14I CCWWGG 3 cut(s) 33, 506, 816
EcoT38I GRGCYC 2 cut(s) 300, 515
ErhI CCWWGG 3 cut(s) 33, 506, 816
FaeI CATG 5 cut(s) 14, 37, 329, 403, 442
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FatI CATG 5 cut(s) 10, 33, 325, 399, 438
FauI CCCGC 3 cut(s) 82, 277, 867
Fnu4HI GCNGC 6 cut(s) 78, 242, 266, 333, 684, 897
FokI GGATG 2 cut(s) 509, 833
FriOI GRGCYC 2 cut(s) 300, 515
Fsp4HI GCNGC 6 cut(s) 78, 242, 266, 333, 684, 897
FspBI CTAG 1 cut(s) 507
GluI GCNGC 6 cut(s) 78, 242, 266, 333, 684, 897
GsaI CCCAGC 1 cut(s) 700
GsuI CTGGAG 3 cut(s) 357, 648, 657
HaeIII GGCC 3 cut(s) 38, 265, 395
HapII CCGG 2 cut(s) 261, 554
HgaI GACGC 2 cut(s) 33, 443
Hin1II CATG 5 cut(s) 14, 37, 329, 403, 442
HincII GTYRAC 1 cut(s) 598
HindII GTYRAC 1 cut(s) 598
HindIII AAGCTT 2 cut(s) 113, 857
HinfI GANTC 4 cut(s) 470, 589, 670, 887
HpaII CCGG 2 cut(s) 261, 554
HphI GGTGA 3 cut(s) 457, 685, 736
Hpy166II GTNNAC 4 cut(s) 121, 598, 802, 848
Hpy188I TCNGA 2 cut(s) 309, 651
Hpy188III TCNNGA 8 cut(s) 439, 474, 476, 572, 581, 665, 674, 863
Hpy8I GTNNAC 4 cut(s) 121, 598, 802, 848
Hpy99I CGWCG 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 160, 609
HpyCH4IV ACGT 1 cut(s) 576
HpyCH4V TGCA 4 cut(s) 362, 389, 739, 848
HpyF10VI GCNNNNNNNGC 4 cut(s) 233, 295, 359, 697
HpyF3I CTNAG 5 cut(s) 231, 237, 306, 347, 900
HpySE526I ACGT 1 cut(s) 576
Hsp92II CATG 5 cut(s) 14, 37, 329, 403, 442
Kzo9I GATC 5 cut(s) 197, 556, 622, 639, 678
LmnI GCTCC 2 cut(s) 67, 510
Lsp1109I GCAGC 1 cut(s) 319
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 507
MaeII ACGT 1 cut(s) 576
MaeIII GTNAC 2 cut(s) 628, 811
MalI GATC 5 cut(s) 199, 558, 624, 641, 680
MbiI CCGCTC 1 cut(s) 353
MboI GATC 5 cut(s) 197, 556, 622, 639, 678
MboII GAAGA 5 cut(s) 560, 596, 624, 728, 794
MfeI CAATTG 2 cut(s) 413, 525
MflI RGATCY 4 cut(s) 197, 556, 622, 639
MhlI GDGCHC 3 cut(s) 300, 515, 850
MlsI TGGCCA 1 cut(s) 38
MluCI AATT 7 cut(s) 16, 249, 357, 413, 525, 539, 837
MluNI TGGCCA 1 cut(s) 38
MlyI GAGTC 1 cut(s) 664
MmeI TCCRAC 1 cut(s) 589
MnlI CCTC 8 cut(s) 75, 81, 145, 169, 177, 192, 672, 754
Mox20I TGGCCA 1 cut(s) 38
MroXI GAANNNNTTC 1 cut(s) 588
MscI TGGCCA 1 cut(s) 38
MseI TTAA 2 cut(s) 534, 795
MslI CAYNNNNRTG 2 cut(s) 443, 753
Msp20I TGGCCA 1 cut(s) 38
MspCI CTTAAG 2 cut(s) 533, 794
MspI CCGG 2 cut(s) 261, 554
MspR9I CCNGG 2 cut(s) 212, 262
MunI CAATTG 2 cut(s) 413, 525
MvaI CCWGG 1 cut(s) 212
MvnI CGCG 2 cut(s) 80, 683
MwoI GCNNNNNNNGC 4 cut(s) 233, 295, 359, 697
NciI CCSGG 1 cut(s) 262
NcoI CCATGG 1 cut(s) 33
NdeII GATC 5 cut(s) 197, 556, 622, 639, 678
NlaIII CATG 5 cut(s) 14, 37, 329, 403, 442
NlaIV GGNNCC 2 cut(s) 24, 420
NspI RCATGY 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 474
PagI TCATGA 1 cut(s) 438
PciI ACATGT 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 588
PfeI GAWTC 3 cut(s) 470, 589, 887
PflMI CCANNNNNTGG 1 cut(s) 34
PkrI GCNGC 6 cut(s) 79, 243, 267, 334, 685, 898
PleI GAGTC 1 cut(s) 664
PpsI GAGTC 1 cut(s) 664
PscI ACATGT 1 cut(s) 325
Psp124BI GAGCTC 2 cut(s) 300, 515
Psp6I CCWGG 1 cut(s) 210
PspFI CCCAGC 1 cut(s) 696
PspGI CCWGG 1 cut(s) 210
PspN4I GGNNCC 2 cut(s) 24, 420
PspPI GGNCC 2 cut(s) 263, 393
PsuI RGATCY 4 cut(s) 197, 556, 622, 639
RsaI GTAC 2 cut(s) 324, 768
RsaNI GTAC 2 cut(s) 323, 767
RseI CAYNNNNRTG 2 cut(s) 443, 753
SacI GAGCTC 2 cut(s) 300, 515
SaqAI TTAA 2 cut(s) 534, 795
SatI GCNGC 6 cut(s) 78, 242, 266, 333, 684, 897
Sau3AI GATC 5 cut(s) 197, 556, 622, 639, 678
Sau96I GGNCC 2 cut(s) 263, 393
ScaI AGTACT 1 cut(s) 768
SchI GAGTC 1 cut(s) 664
ScrFI CCNGG 2 cut(s) 212, 262
SduI GDGCHC 3 cut(s) 300, 515, 850
SfaNI GCATC 1 cut(s) 371
Sfr274I CTCGAG 1 cut(s) 474
SlaI CTCGAG 1 cut(s) 474
SmiMI CAYNNNNRTG 2 cut(s) 443, 753
SmlI CTYRAG 4 cut(s) 474, 533, 794, 863
SmoI CTYRAG 4 cut(s) 474, 533, 794, 863
Sse9I AATT 7 cut(s) 16, 249, 357, 413, 525, 539, 837
SspMI CTAG 1 cut(s) 507
SstI GAGCTC 2 cut(s) 300, 515
StyD4I CCNGG 2 cut(s) 210, 260
StyI CCWWGG 3 cut(s) 33, 506, 816
TaiI ACGT 1 cut(s) 579
TaqI TCGA 3 cut(s) 475, 549, 733
TasI AATT 7 cut(s) 16, 249, 357, 413, 525, 539, 837
TatI WGTACW 1 cut(s) 766
TauI GCSGC 4 cut(s) 80, 244, 268, 686
TfiI GAWTC 3 cut(s) 470, 589, 887
Tru1I TTAA 2 cut(s) 534, 795
Tru9I TTAA 2 cut(s) 534, 795
TscAI CASTG 1 cut(s) 855
TseI GCWGC 2 cut(s) 332, 896
TspDTI ATGAA 6 cut(s) 91, 387, 441, 553, 762, 795
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 1 cut(s) 855
Van91I CCANNNNNTGG 1 cut(s) 34
Vha464I CTTAAG 2 cut(s) 533, 794
VneI GTGCAC 1 cut(s) 846
XapI RAATTY 1 cut(s) 539
XceI RCATGY 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 889
XhoI CTCGAG 1 cut(s) 474
XmaJI CCTAGG 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 588
XspI CTAG 1 cut(s) 507
ZrmI AGTACT 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.