Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

1405880 .. 1406768

Gene Structure 889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG023700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTAGGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTCCCTGAAGAGATTCTTGTTGACAGAGTAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCTACCATCTGAAGTATTCTCCTCCAGAGACCCCAGAGATCGCGGCAAGGCTCACCCAACGTTTTGATGATACAGAAGAAAAGGACCCCGTAATCAGGCCACTATATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAACTGAAATTCCATTGTGGATTAACCTCTCCCGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

125

Amino Acids

14.55

Weight (kDa)

4.78

Isoelectric Point (pI)

61.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADK	PF00406	1 - 90	1.9e-12	Adenylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
AccII	CGCG	1 cut(s)	242
AciI	CCGC	1 cut(s)	242
AclI	AACGTT	1 cut(s)	259
AclWI	GGATC	2 cut(s)	123, 176
AcsI	RAATTY	2 cut(s)	98, 345
AcuI	CTGAAG	2 cut(s)	162, 230
AcyI	GRCGYC	1 cut(s)	135
AfiI	CCNNNNNNNGG	2 cut(s)	191, 294
AflII	CTTAAG	1 cut(s)	92
AjuI	GAANNNNNNNTTGG	2 cut(s)	308, 340
AluBI	AGCT	1 cut(s)	72
AluI	AGCT	1 cut(s)	72
Alw21I	GWGCWC	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	123, 176
Ama87I	CYCGRG	1 cut(s)	33
AoxI	GGCC	1 cut(s)	296
ApoI	RAATTY	2 cut(s)	98, 345
Asp700I	GAANNNNTTC	2 cut(s)	147, 333
AspA2I	CCTAGG	1 cut(s)	65
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	2 cut(s)	16, 244
AvaI	CYCGRG	1 cut(s)	33
AvaII	GGWCC	1 cut(s)	283
AvrII	CCTAGG	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	74
Bbv12I	GWGCWC	1 cut(s)	74
BccI	CCATC	2 cut(s)	50, 213
BciVI	GTATCC	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	1 cut(s)	66
BfrI	CTTAAG	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	53
BglII	AGATCT	1 cut(s)	198
BisI	GCNGC	1 cut(s)	243
BlnI	CCTAGG	1 cut(s)	65
BlsI	GCNGC	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	33
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	285
BpmI	CTGGAG	2 cut(s)	207, 332
BsaHI	GRCGYC	1 cut(s)	135
BsaI	GGTCTC	1 cut(s)	221
BsaJI	CCNNGG	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 294
Bse1I	ACTGG	2 cut(s)	196, 315
BseDI	CCNNGG	1 cut(s)	65
BseGI	GGATG	1 cut(s)	61
BseLI	CCNNNNNNNGG	2 cut(s)	191, 294
BseNI	ACTGG	2 cut(s)	196, 315
BseRI	GAGGAG	1 cut(s)	210
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	74
BsiHKCI	CYCGRG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	122
BslI	CCNNNNNNNGG	2 cut(s)	191, 294
BsmAI	GTCTC	1 cut(s)	221
BsmFI	GGGAC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	221
BsoBI	CYCGRG	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	115, 181, 198, 237
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	1 cut(s)	285
BspPI	GGATC	2 cut(s)	123, 176
BspTI	CTTAAG	1 cut(s)	92
BspTNI	GGTCTC	1 cut(s)	221
BsrI	ACTGG	2 cut(s)	196, 315
BssECI	CCNNGG	1 cut(s)	65
BssMI	GATC	4 cut(s)	115, 181, 198, 237
BssNI	GRCGYC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	65
Bst6I	CTCTTC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	135
BstAFI	CTTAAG	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	47, 81
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	1 cut(s)	242
BstKTI	GATC	4 cut(s)	118, 184, 201, 240
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	4 cut(s)	115, 181, 198, 237
BstUI	CGCG	1 cut(s)	242
BstX2I	RGATCY	3 cut(s)	115, 181, 198
BstYI	RGATCY	3 cut(s)	115, 181, 198
BsuI	GTATCC	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	298
BtgZI	GCGATG	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	47, 81
Cfr13I	GGNCC	1 cut(s)	283
CseI	GACGC	1 cut(s)	2
CviJI	RGCY	8 cut(s)	25, 45, 49, 72, 105, 112, 250, 298
CviKI_1	RGCY	8 cut(s)	25, 45, 49, 72, 105, 112, 250, 298
DpnI	GATC	4 cut(s)	117, 183, 200, 239
DpnII	GATC	4 cut(s)	115, 181, 198, 237
Eam1104I	CTCTTC	1 cut(s)	138
EarI	CTCTTC	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	72
Eco130I	CCWWGG	1 cut(s)	65
Eco24I	GRGCYC	1 cut(s)	74
Eco31I	GGTCTC	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	283
Eco53kI	GAGCTC	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	162, 230
Eco88I	CYCGRG	1 cut(s)	33
EcoICRI	GAGCTC	1 cut(s)	72
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	98
EcoT14I	CCWWGG	1 cut(s)	65
EcoT38I	GRGCYC	1 cut(s)	74
ErhI	CCWWGG	1 cut(s)	65
FaiI	YATR	3 cut(s)	304, 306, 376
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	122
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	68
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	2 cut(s)	207, 332
HaeIII	GGCC	1 cut(s)	298
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	2
Hin1I	GRCGYC	1 cut(s)	135
HincII	GTYRAC	1 cut(s)	157
HindII	GTYRAC	1 cut(s)	157
HinfI	GANTC	2 cut(s)	29, 148
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	16, 244
Hpy166II	GTNNAC	1 cut(s)	157
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	5 cut(s)	33, 35, 131, 224, 369
Hpy8I	GTNNAC	1 cut(s)	157
HpyAV	CCTTC	1 cut(s)	168
HpyCH4IV	ACGT	2 cut(s)	135, 259
HpySE526I	ACGT	2 cut(s)	135, 259
Hsp92I	GRCGYC	1 cut(s)	135
Kzo9I	GATC	4 cut(s)	115, 181, 198, 237
LmnI	GCTCC	1 cut(s)	69
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	2 cut(s)	135, 259
MaeIII	GTNAC	2 cut(s)	187, 320
MalI	GATC	4 cut(s)	117, 183, 200, 239
MboI	GATC	4 cut(s)	115, 181, 198, 237
MboII	GAAGA	5 cut(s)	119, 155, 183, 287, 341
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	3 cut(s)	115, 181, 198
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	3 cut(s)	84, 98, 345
MmeI	TCCRAC	1 cut(s)	148
MnlI	CCTC	2 cut(s)	231, 374
MroXI	GAANNNNTTC	2 cut(s)	147, 333
MseI	TTAA	2 cut(s)	93, 360
MspCI	CTTAAG	1 cut(s)	92
MspI	CCGG	1 cut(s)	113
MunI	CAATTG	1 cut(s)	84
MvnI	CGCG	1 cut(s)	242
NdeII	GATC	4 cut(s)	115, 181, 198, 237
NlaIV	GGNNCC	1 cut(s)	285
PaeR7I	CTCGAG	1 cut(s)	33
PdmI	GAANNNNTTC	2 cut(s)	147, 333
PfeI	GAWTC	2 cut(s)	29, 148
PkrI	GCNGC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	74
Psp1406I	AACGTT	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	283
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	283
PspPPI	RGGWCCY	1 cut(s)	283
PsuI	RGATCY	3 cut(s)	115, 181, 198
SacI	GAGCTC	1 cut(s)	74
SaqAI	TTAA	2 cut(s)	93, 360
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	4 cut(s)	115, 181, 198, 237
Sau96I	GGNCC	1 cut(s)	283
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	5 cut(s)	74, 138, 179, 262, 366
Sfr274I	CTCGAG	1 cut(s)	33
SinI	GGWCC	1 cut(s)	283
SlaI	CTCGAG	1 cut(s)	33
SmlI	CTYRAG	2 cut(s)	33, 92
SmoI	CTYRAG	2 cut(s)	33, 92
Sse9I	AATT	3 cut(s)	84, 98, 345
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	66
SstI	GAGCTC	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	65
TaiI	ACGT	2 cut(s)	138, 262
TaqI	TCGA	2 cut(s)	34, 108
TasI	AATT	3 cut(s)	84, 98, 345
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	2 cut(s)	29, 148
Tru1I	TTAA	2 cut(s)	93, 360
Tru9I	TTAA	2 cut(s)	93, 360
TspDTI	ATGAA	2 cut(s)	112, 321
Vha464I	CTTAAG	1 cut(s)	92
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	2 cut(s)	98, 345
XhoI	CTCGAG	1 cut(s)	33
XmaJI	CCTAGG	1 cut(s)	65
XmnI	GAANNNNTTC	2 cut(s)	147, 333
XspI	CTAG	1 cut(s)	66
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.