Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002440

Physical Location & Seq

Genomic Coordinates Forward (+)

12795815 .. 12803633

Gene Structure 7819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032264

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGATACCAGTTGCTAAGTATGATTTGATACATGTCGCTGCTGGAGATTTACTTAGAGCGGAAATTGCATCTGGGAGTGAAAATGGGAAGCGTGCAAGGGCGTACATGGACAAAGGACAATTGGTTCCAGATGAAATAGTTGTTATGATGGTGAAAGAGCGTCTATTACAGCCAGATTCTCGAGAAAAAGGCTGGCTCTTGGATGGATACCCTACGAGCTCATCGCAAGCAATTGCTCTTAAGGAATTCGGCTTCGAGCCGGATCTTTTCATTCTTCTTGACGTAATAGTTGGAAGAAGGTTAGATCCTGTTACTGGAAAGATCATTTGCCTATTAATTAATGACGCCGTAATCAGGCCACTACATGAACTGGAGAAAAGTAACTTGGAAGATATTCTAACTGAAATTCCATTGTGGATAAAATGCCCCGATTACGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004017 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009165 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0032501 GO:0034641 GO:0034654 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046940 GO:0048871 GO:0050145 GO:0055086 GO:0065007 GO:0065008 GO:0071704 GO:0090407 GO:0097009 GO:1901293 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00730 ko01100 ko01110 ko01130 map00230 map00730 map01100 map01110 map01130

Pfam Domains

Protein Families

ADK

Protein Analysis

147

Amino Acids

16.39

Weight (kDa)

4.86

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_17	PF13207	4 - 95	5.3e-14	AAA domain
ADK	PF00406	5 - 95	8.6e-27	Adenylate kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47840 AT5G47840
fragaria_vesca	FvH4_5g31400 FvH4_5g31400 FvH4_5g31400 FvH4_5g31400
malus_domestica	MD08G1217400.v1.1 MD15G1404700.v1.1
prunus_persica	Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1 Prupe.1G556600_v2.0.a1
pyrus_communis	pycom15g36210
rosa_chinensis	RchiOBHm_Chr1g0329011 RchiOBHm_Chr7g0223711 RchiOBHm_Chr7g0226671
rosa_laevigata	RLG00000001708 RLG00000009936 RLG00000032182 RLG00000032264 RLG00000034316 RLG00000035641 RLG00000036166
rosa_multiflora	Rmu_sc0001903.1_g000022 Rmu_sc0009538.1_g000003
rosa_roxburghii	Rroxscaffold_3G00232500
rosa_rugosa	Rorug07G0218900 Rorug07G0239100
rosa_samantha	Rh2DG023700 Rh4AG027300 Rh7AG361700 Rh7AG387100 Rh7BG353200 Rh7BG373300 Rh7CG380300 Rh7CG406300 Rh7DG357100 Rh7DG385400
rosa_wichuraiana	Rw2G034670 Rw5G032960 Rw7G030750 Rw7G032460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	59
AciI	CCGC	1 cut(s)	59
AclWI	GGATC	2 cut(s)	270, 299
AcsI	RAATTY	2 cut(s)	245, 405
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	314, 354
AflII	CTTAAG	1 cut(s)	239
AflIII	ACRYGT	1 cut(s)	31
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AloI	GAACNNNNNNTCC	2 cut(s)	108, 140
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
Alw21I	GWGCWC	1 cut(s)	221
AlwI	GGATC	2 cut(s)	270, 299
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	1 cut(s)	356
ApeKI	GCWGC	1 cut(s)	38
ApoI	RAATTY	2 cut(s)	245, 405
AseI	ATTAAT	2 cut(s)	335, 339
Asp700I	GAANNNNTTC	1 cut(s)	393
AsuHPI	GGTGA	1 cut(s)	163
AvaI	CYCGRG	1 cut(s)	180
BanII	GRGCYC	1 cut(s)	221
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	25
BccI	CCATC	2 cut(s)	142, 197
BceAI	ACGGC	1 cut(s)	332
BciVI	GTATCC	1 cut(s)	200
BfrI	CTTAAG	1 cut(s)	239
BfuI	GTATCC	1 cut(s)	200
BisI	GCNGC	1 cut(s)	39
BlsI	GCNGC	1 cut(s)	40
BmeT110I	CYCGRG	1 cut(s)	180
BmiI	GGNNCC	1 cut(s)	126
BmsI	GCATC	1 cut(s)	77
BpmI	CTGGAG	2 cut(s)	63, 392
BsaHI	GRCGYC	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 354
Bse1I	ACTGG	3 cut(s)	8, 319, 375
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	2 cut(s)	314, 354
BseNI	ACTGG	3 cut(s)	8, 319, 375
BseXI	GCAGC	1 cut(s)	25
BshFI	GGCC	1 cut(s)	358
BsiHKAI	GWGCWC	1 cut(s)	221
BsiHKCI	CYCGRG	1 cut(s)	180
BsiSI	CCGG	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	314, 354
BsnI	GGCC	1 cut(s)	358
BsoBI	CYCGRG	1 cut(s)	180
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	3 cut(s)	262, 304, 321
BspACI	CCGC	1 cut(s)	59
BspANI	GGCC	1 cut(s)	358
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	2 cut(s)	270, 299
BspTI	CTTAAG	1 cut(s)	239
BsrBI	CCGCTC	1 cut(s)	59
BsrI	ACTGG	3 cut(s)	8, 319, 375
BssMI	GATC	3 cut(s)	262, 304, 321
BssNI	GRCGYC	1 cut(s)	345
BstACI	GRCGYC	1 cut(s)	345
BstAFI	CTTAAG	1 cut(s)	239
BstC8I	GCNNGC	3 cut(s)	93, 194, 228
BstDEI	CTNAG	2 cut(s)	15, 53
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	3 cut(s)	265, 307, 324
BstMBI	GATC	3 cut(s)	262, 304, 321
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNSI	RCATGY	1 cut(s)	35
BstV1I	GCAGC	1 cut(s)	25
BstX2I	RGATCY	2 cut(s)	262, 304
BstYI	RGATCY	2 cut(s)	262, 304
BsuI	GTATCC	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	358
BtgZI	GCGATG	1 cut(s)	207
BtsCI	GGATG	1 cut(s)	208
Cac8I	GCNNGC	3 cut(s)	93, 194, 228
CseI	GACGC	2 cut(s)	149, 353
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	3 cut(s)	32, 106, 365
CviJI	RGCY	7 cut(s)	172, 192, 196, 219, 252, 259, 358
CviKI_1	RGCY	7 cut(s)	172, 192, 196, 219, 252, 259, 358
CviQI	GTAC	1 cut(s)	103
DdeI	CTNAG	2 cut(s)	15, 53
DpnI	GATC	3 cut(s)	264, 306, 323
DpnII	GATC	3 cut(s)	262, 304, 321
Ecl136II	GAGCTC	1 cut(s)	219
Eco24I	GRGCYC	1 cut(s)	221
Eco53kI	GAGCTC	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	180
EcoICRI	GAGCTC	1 cut(s)	219
EcoRI	GAATTC	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	221
FaeI	CATG	3 cut(s)	35, 109, 368
FaiI	YATR	5 cut(s)	21, 33, 107, 146, 366
FatI	CATG	3 cut(s)	31, 105, 364
Fnu4HI	GCNGC	1 cut(s)	39
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	39
GluI	GCNGC	1 cut(s)	39
GsuI	CTGGAG	2 cut(s)	63, 392
HaeIII	GGCC	1 cut(s)	358
HapII	CCGG	1 cut(s)	260
HgaI	GACGC	2 cut(s)	149, 353
Hin1I	GRCGYC	1 cut(s)	345
Hin1II	CATG	3 cut(s)	35, 109, 368
HinfI	GANTC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	1 cut(s)	163
Hpy188III	TCNNGA	4 cut(s)	128, 180, 182, 278
HpyAV	CCTTC	1 cut(s)	291
HpyCH4IV	ACGT	1 cut(s)	282
HpyCH4V	TGCA	2 cut(s)	68, 95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	2 cut(s)	15, 53
HpySE526I	ACGT	1 cut(s)	282
Hsp92I	GRCGYC	1 cut(s)	345
Hsp92II	CATG	3 cut(s)	35, 109, 368
Kzo9I	GATC	3 cut(s)	262, 304, 321
Lsp1109I	GCAGC	1 cut(s)	25
LweI	GCATC	1 cut(s)	77
MaeII	ACGT	1 cut(s)	282
MaeIII	GTNAC	2 cut(s)	310, 380
MalI	GATC	3 cut(s)	264, 306, 323
MbiI	CCGCTC	1 cut(s)	59
MboI	GATC	3 cut(s)	262, 304, 321
MboII	GAAGA	3 cut(s)	266, 306, 401
MfeI	CAATTG	2 cut(s)	119, 231
MflI	RGATCY	2 cut(s)	262, 304
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	6 cut(s)	63, 119, 231, 245, 336, 405
MmeI	TCCRAC	1 cut(s)	271
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	3 cut(s)	240, 335, 339
MspCI	CTTAAG	1 cut(s)	239
MspI	CCGG	1 cut(s)	260
MunI	CAATTG	2 cut(s)	119, 231
MwoI	GCNNNNNNNGC	1 cut(s)	65
NdeII	GATC	3 cut(s)	262, 304, 321
NlaIII	CATG	3 cut(s)	35, 109, 368
NlaIV	GGNNCC	1 cut(s)	126
NspI	RCATGY	1 cut(s)	35
PacI	TTAATTAA	1 cut(s)	339
PaeR7I	CTCGAG	1 cut(s)	180
PciI	ACATGT	1 cut(s)	31
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	1 cut(s)	40
PscI	ACATGT	1 cut(s)	31
PshBI	ATTAAT	2 cut(s)	335, 339
Psp124BI	GAGCTC	1 cut(s)	221
PspN4I	GGNNCC	1 cut(s)	126
PsuI	RGATCY	2 cut(s)	262, 304
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SacI	GAGCTC	1 cut(s)	221
SaqAI	TTAA	3 cut(s)	240, 335, 339
SatI	GCNGC	1 cut(s)	39
Sau3AI	GATC	3 cut(s)	262, 304, 321
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	3 cut(s)	221, 285, 302
SfaNI	GCATC	1 cut(s)	77
Sfr274I	CTCGAG	1 cut(s)	180
SlaI	CTCGAG	1 cut(s)	180
SmlI	CTYRAG	2 cut(s)	180, 239
SmoI	CTYRAG	2 cut(s)	180, 239
Sse9I	AATT	6 cut(s)	63, 119, 231, 245, 336, 405
SsiI	CCGC	1 cut(s)	59
SstI	GAGCTC	1 cut(s)	221
TaiI	ACGT	1 cut(s)	285
TaqI	TCGA	2 cut(s)	181, 255
TasI	AATT	6 cut(s)	63, 119, 231, 245, 336, 405
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	3 cut(s)	240, 335, 339
Tru9I	TTAA	3 cut(s)	240, 335, 339
TseI	GCWGC	1 cut(s)	38
TspDTI	ATGAA	3 cut(s)	147, 259, 381
Vha464I	CTTAAG	1 cut(s)	239
VspI	ATTAAT	2 cut(s)	335, 339
XapI	RAATTY	2 cut(s)	245, 405
XceI	RCATGY	1 cut(s)	35
XhoI	CTCGAG	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.