Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Forward (+)

21111445 .. 21113403

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G51970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGGGAAAGGAGGGATGTCTCAAGGAGAAGGCTCAAAGGTTGAAGAAGAAAACATGGCTGCTTGGTTGGTTGGTATCAATACCCTCAAGATCCAACCTTTTCTTCTTCCTTCCGTTGGTCCTCATGATGTGAGAGTTAGGATGAAAGCTGTTGGTATTTGTGGAAGTGATGTTCATTACCTTAAGACCATGAGATGTGCGGATTTTGTGGTGAAAGAGCCGATGGTGATTGGACATGAATGTGCTGGGATCATTGAAGAAGTAGGTGAAGAAGTGAAACATTTAGTGGTTGGTGACCGTGTAGCTCTTGAACCTGGGATTAGTTGTTGGAGATGCAATCTCTGCAGGGAAGGACGATACAACCTTTGTCCAGAAATGAAGTTCTTTGCAACTCCACCGGTTCATGGCTCTTTAGCTAACCAAGTGGTACACCCTGCGGACCTATGCTTCAAATTGCCTGAGAATGTGAGTTTGGAGGAAGGAGCAATGTGTGAACCACTTAGTGTTGGTGTCCATGCTTGTCGCCGAGCTGAGGTTGGTCCTGAAACAAACGTTTTGGTAATGGGAGCTGGACCTATTGGCCTTGTTACAATGTTGGCTGCTCGGGCTTTCAGTGTGCCTAGAATTGTTATTGTGGATGTTGATGAGAACCGTTTAGCCGTAGCAAAACAGCTCGGCGCAGATGAGATTGTACAAGTGACAACAAACTTAGAGGATGTTGGTTCTGAGGTTGAACAGATTCAGAAAGCTATGGGGTCAAACATCGATGTAACATTCGACTGTGCGGGTTTTAACAAAACCATGTCGACAGCATTAGCAGCCACTCGTTGTGGCGGTAAAGTCTGTCTTGTCGGAATGGGTCACGGTATAATGACTGTCCCTCTCACTCCTGCAGCTGCAAGGGAGGTAGATGTGGTGGGTGTGTTCAGGTACAAGAACACATGGCCATTGTGTCTTGAGTTCCTGACAAGTGGTAAGATTGATGTAAAGCCACTCATAACCCACAGATTCGGTTTCTCTCAAAAGGAAGTGGAAGATGCCTTTGAAACCAGTGCTCGTGGGAGCAATGCCATCAAAGTTATGTTCAATCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

364

Amino Acids

39.26

Weight (kDa)

5.67

Isoelectric Point (pI)

26.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	40 - 154	9.1e-29	Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C	PF16912	161 - 289	2.5e-09	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	192 - 323	4.6e-26	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	225 - 356	1.3e-06	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	806
AciI	CCGC	4 cut(s)	200, 437, 785, 834
AclI	AACGTT	1 cut(s)	552
AclWI	GGATC	2 cut(s)	85, 257
AcoI	YGGCCR	1 cut(s)	944
AdeI	CACNNNGTG	1 cut(s)	503
AfaI	GTAC	3 cut(s)	429, 693, 932
AfiI	CCNNNNNNNGG	3 cut(s)	116, 404, 532
AflII	CTTAAG	1 cut(s)	182
AgeI	ACCGGT	1 cut(s)	397
AgsI	TTSAA	7 cut(s)	44, 257, 311, 451, 734, 1046, 1087
AjnI	CCWGG	1 cut(s)	313
AjuI	GAANNNNNNNTTGG	4 cut(s)	87, 119, 455, 487
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	8 cut(s)	149, 305, 416, 530, 569, 673, 749, 896
AluI	AGCT	8 cut(s)	149, 305, 416, 530, 569, 673, 749, 896
Alw21I	GWGCWC	1 cut(s)	1057
Alw26I	GTCTC	1 cut(s)	24
AlwI	GGATC	2 cut(s)	85, 257
Ama87I	CYCGRG	1 cut(s)	603
AoxI	GGCC	2 cut(s)	580, 944
ApeKI	GCWGC	5 cut(s)	59, 599, 818, 893, 896
AsiGI	ACCGGT	1 cut(s)	397
Asp700I	GAANNNNTTC	1 cut(s)	738
AspLEI	GCGC	1 cut(s)	680
AspS9I	GGNCC	4 cut(s)	119, 439, 539, 572
AsuHPI	GGTGA	4 cut(s)	223, 238, 278, 305
AvaI	CYCGRG	1 cut(s)	603
AvaII	GGWCC	4 cut(s)	119, 439, 539, 572
BalI	TGGCCA	1 cut(s)	946
BauI	CACGAG	1 cut(s)	1056
Bbv12I	GWGCWC	1 cut(s)	1057
BbvCI	CCTCAGC	1 cut(s)	531
BbvI	GCAGC	5 cut(s)	46, 586, 830, 883, 905
BccI	CCATC	2 cut(s)	217, 1079
BceAI	ACGGC	1 cut(s)	644
BciT130I	CCWGG	1 cut(s)	315
BcoDI	GTCTC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	621
BfmI	CTRYAG	2 cut(s)	343, 891
BfrI	CTTAAG	1 cut(s)	182
BisI	GCNGC	5 cut(s)	60, 600, 819, 894, 897
BlsI	GCNGC	5 cut(s)	61, 601, 820, 895, 898
Bme1390I	CCNGG	1 cut(s)	315
Bme18I	GGWCC	4 cut(s)	119, 439, 539, 572
BmeT110I	CYCGRG	1 cut(s)	603
BmgT120I	GGNCC	4 cut(s)	119, 439, 539, 572
BmrFI	CCNGG	1 cut(s)	315
BmsI	GCATC	2 cut(s)	323, 1027
Bpu10I	CCTNAGC	1 cut(s)	531
BpuEI	CTTGAG	3 cut(s)	6, 71, 977
Bsa29I	ATCGAT	1 cut(s)	765
BsaJI	CCNNGG	1 cut(s)	314
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	3 cut(s)	116, 404, 532
Bse118I	RCCGGY	1 cut(s)	397
Bse1I	ACTGG	1 cut(s)	1050
Bse3DI	GCAATG	2 cut(s)	492, 1072
BseBI	CCWGG	1 cut(s)	315
BseCI	ATCGAT	1 cut(s)	765
BseDI	CCNNGG	1 cut(s)	314
BseGI	GGATG	4 cut(s)	21, 147, 643, 721
BseLI	CCNNNNNNNGG	3 cut(s)	116, 404, 532
BseMI	GCAATG	2 cut(s)	492, 1072
BseMII	CTCAG	3 cut(s)	450, 522, 717
BseNI	ACTGG	1 cut(s)	1050
BseXI	GCAGC	5 cut(s)	46, 586, 830, 883, 905
BseYI	CCCAGC	1 cut(s)	245
BshFI	GGCC	2 cut(s)	582, 946
BshTI	ACCGGT	1 cut(s)	397
BshVI	ATCGAT	1 cut(s)	765
BsiHKAI	GWGCWC	1 cut(s)	1057
BsiHKCI	CYCGRG	1 cut(s)	603
BsiSI	CCGG	1 cut(s)	398
BslFI	GGGAC	1 cut(s)	863
BslI	CCNNNNNNNGG	3 cut(s)	116, 404, 532
BsmAI	GTCTC	1 cut(s)	24
BsmFI	GGGAC	1 cut(s)	863
BsnI	GGCC	2 cut(s)	582, 946
BsoBI	CYCGRG	1 cut(s)	603
Bsp1286I	GDGCHC	1 cut(s)	1057
Bsp1407I	TGTACA	1 cut(s)	691
Bsp143I	GATC	2 cut(s)	90, 249
BspACI	CCGC	4 cut(s)	200, 437, 785, 834
BspANI	GGCC	2 cut(s)	582, 946
BspCNI	CTCAG	3 cut(s)	451, 523, 718
BspDI	ATCGAT	1 cut(s)	765
BspHI	TCATGA	1 cut(s)	124
BspMAI	CTGCAG	2 cut(s)	347, 895
BspPI	GGATC	2 cut(s)	85, 257
BspTI	CTTAAG	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	492, 1072
BsrFI	RCCGGY	1 cut(s)	397
BsrGI	TGTACA	1 cut(s)	691
BsrI	ACTGG	1 cut(s)	1050
BssAI	RCCGGY	1 cut(s)	397
BssECI	CCNNGG	1 cut(s)	314
BssMI	GATC	2 cut(s)	90, 249
BssSI	CACGAG	1 cut(s)	1056
Bst2BI	CACGAG	1 cut(s)	1056
Bst2UI	CCWGG	1 cut(s)	315
Bst4CI	ACNGT	5 cut(s)	299, 653, 782, 866, 877
BstAFI	CTTAAG	1 cut(s)	182
BstAPI	GCANNNNNTGC	1 cut(s)	342
BstAUI	TGTACA	1 cut(s)	691
BstDEI	CTNAG	5 cut(s)	459, 500, 531, 709, 726
BstEII	GGTNACC	1 cut(s)	293
BstF5I	GGATG	4 cut(s)	21, 147, 643, 721
BstHHI	GCGC	1 cut(s)	680
BstKTI	GATC	2 cut(s)	93, 252
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	2 cut(s)	90, 249
BstMWI	GCNNNNNNNGC	3 cut(s)	342, 605, 818
BstNI	CCWGG	1 cut(s)	315
BstPI	GGTNACC	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	313
BstSFI	CTRYAG	2 cut(s)	343, 891
BstV1I	GCAGC	5 cut(s)	46, 586, 830, 883, 905
BstX2I	RGATCY	1 cut(s)	90
BstYI	RGATCY	1 cut(s)	90
Bsu15I	ATCGAT	1 cut(s)	765
BsuRI	GGCC	2 cut(s)	582, 946
BsuTUI	ATCGAT	1 cut(s)	765
BtsCI	GGATG	4 cut(s)	21, 147, 643, 721
BtsIMutI	CAGTG	2 cut(s)	619, 1057
CciI	TCATGA	1 cut(s)	124
CfoI	GCGC	1 cut(s)	680
Cfr10I	RCCGGY	1 cut(s)	397
Cfr13I	GGNCC	4 cut(s)	119, 439, 539, 572
ClaI	ATCGAT	1 cut(s)	765
Csp6I	GTAC	3 cut(s)	428, 692, 931
CspAI	ACCGGT	1 cut(s)	397
CviAII	CATG	8 cut(s)	55, 125, 190, 236, 404, 515, 802, 942
CviQI	GTAC	3 cut(s)	428, 692, 931
DdeI	CTNAG	5 cut(s)	459, 500, 531, 709, 726
DpnI	GATC	2 cut(s)	92, 251
DpnII	GATC	2 cut(s)	90, 249
DraIII	CACNNNGTG	1 cut(s)	503
EaeI	YGGCCR	1 cut(s)	944
Eco47I	GGWCC	4 cut(s)	119, 439, 539, 572
Eco88I	CYCGRG	1 cut(s)	603
Eco91I	GGTNACC	1 cut(s)	293
EcoO65I	GGTNACC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	313
FaeI	CATG	8 cut(s)	58, 128, 193, 239, 407, 518, 805, 945
FalI	AAGNNNNNCTT	2 cut(s)	831, 863
FaqI	GGGAC	1 cut(s)	863
FatI	CATG	8 cut(s)	54, 124, 189, 235, 403, 514, 801, 941
FauI	CCCGC	1 cut(s)	778
FblI	GTMKAC	1 cut(s)	806
Fnu4HI	GCNGC	5 cut(s)	60, 600, 819, 894, 897
FokI	GGATG	4 cut(s)	28, 154, 650, 728
Fsp4HI	GCNGC	5 cut(s)	60, 600, 819, 894, 897
FspBI	CTAG	1 cut(s)	621
GlaI	GCGC	1 cut(s)	679
GluI	GCNGC	5 cut(s)	60, 600, 819, 894, 897
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	582, 946
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	1 cut(s)	680
Hin1II	CATG	8 cut(s)	58, 128, 193, 239, 407, 518, 805, 945
Hin6I	GCGC	1 cut(s)	678
HinP1I	GCGC	1 cut(s)	678
HincII	GTYRAC	1 cut(s)	807
HindII	GTYRAC	1 cut(s)	807
HinfI	GANTC	2 cut(s)	739, 1008
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	4 cut(s)	223, 238, 278, 305
Hpy166II	GTNNAC	3 cut(s)	430, 494, 807
Hpy188I	TCNGA	4 cut(s)	727, 744, 854, 1094
Hpy188III	TCNNGA	7 cut(s)	88, 125, 308, 371, 542, 956, 964
Hpy8I	GTNNAC	3 cut(s)	430, 494, 807
HpyAV	CCTTC	4 cut(s)	23, 120, 344, 473
HpyCH4III	ACNGT	5 cut(s)	299, 653, 782, 866, 877
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	5 cut(s)	336, 345, 389, 893, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	342, 605, 818
HpyF3I	CTNAG	5 cut(s)	459, 500, 531, 709, 726
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	8 cut(s)	58, 128, 193, 239, 407, 518, 805, 945
HspAI	GCGC	1 cut(s)	678
Kzo9I	GATC	2 cut(s)	90, 249
LmnI	GCTCC	3 cut(s)	482, 566, 1062
Lsp1109I	GCAGC	5 cut(s)	46, 586, 830, 883, 905
LweI	GCATC	2 cut(s)	323, 1027
MaeI	CTAG	1 cut(s)	621
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	5 cut(s)	293, 586, 697, 769, 860
MalI	GATC	2 cut(s)	92, 251
MboI	GATC	2 cut(s)	90, 249
MboII	GAAGA	7 cut(s)	56, 59, 95, 98, 269, 281, 1046
MflI	RGATCY	1 cut(s)	90
MhlI	GDGCHC	1 cut(s)	1057
MlsI	TGGCCA	1 cut(s)	946
MluCI	AATT	2 cut(s)	452, 624
MluNI	TGGCCA	1 cut(s)	946
MmeI	TCCRAC	3 cut(s)	118, 308, 832
MnlI	CCTC	9 cut(s)	5, 95, 132, 469, 526, 706, 721, 891, 898
Mox20I	TGGCCA	1 cut(s)	946
MroXI	GAANNNNTTC	1 cut(s)	738
MscI	TGGCCA	1 cut(s)	946
MseI	TTAA	2 cut(s)	183, 792
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	946
MspA1I	CMGCKG	1 cut(s)	896
MspCI	CTTAAG	1 cut(s)	182
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	315
MvaI	CCWGG	1 cut(s)	315
MwoI	GCNNNNNNNGC	3 cut(s)	342, 605, 818
NdeII	GATC	2 cut(s)	90, 249
NlaIII	CATG	8 cut(s)	58, 128, 193, 239, 407, 518, 805, 945
NmeAIII	GCCGAG	2 cut(s)	551, 654
NmuCI	GTSAC	3 cut(s)	293, 697, 860
PagI	TCATGA	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	739, 1008
PinAI	ACCGGT	1 cut(s)	397
PkrI	GCNGC	5 cut(s)	61, 601, 820, 895, 898
Psp1406I	AACGTT	1 cut(s)	552
Psp6I	CCWGG	1 cut(s)	313
PspEI	GGTNACC	1 cut(s)	293
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	1 cut(s)	313
PspPI	GGNCC	4 cut(s)	119, 439, 539, 572
PstI	CTGCAG	2 cut(s)	347, 895
PsuI	RGATCY	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	3 cut(s)	429, 693, 932
RsaNI	GTAC	3 cut(s)	428, 692, 931
RseI	CAYNNNNRTG	1 cut(s)	240
SalI	GTCGAC	1 cut(s)	805
SaqAI	TTAA	2 cut(s)	183, 792
SatI	GCNGC	5 cut(s)	60, 600, 819, 894, 897
Sau3AI	GATC	2 cut(s)	90, 249
Sau96I	GGNCC	4 cut(s)	119, 439, 539, 572
ScrFI	CCNGG	1 cut(s)	315
SduI	GDGCHC	1 cut(s)	1057
SfaNI	GCATC	2 cut(s)	323, 1027
SfcI	CTRYAG	2 cut(s)	343, 891
SinI	GGWCC	4 cut(s)	119, 439, 539, 572
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	4 cut(s)	21, 86, 182, 956
SmoI	CTYRAG	4 cut(s)	21, 86, 182, 956
Sse9I	AATT	2 cut(s)	452, 624
SsiI	CCGC	4 cut(s)	200, 437, 785, 834
SspMI	CTAG	1 cut(s)	621
StyD4I	CCNGG	1 cut(s)	313
TaaI	ACNGT	5 cut(s)	299, 653, 782, 866, 877
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	3 cut(s)	765, 777, 806
TasI	AATT	2 cut(s)	452, 624
TatI	WGTACW	1 cut(s)	691
TfiI	GAWTC	2 cut(s)	739, 1008
Tru1I	TTAA	2 cut(s)	183, 792
Tru9I	TTAA	2 cut(s)	183, 792
TscAI	CASTG	2 cut(s)	619, 1057
TseFI	GTSAC	3 cut(s)	293, 697, 860
TseI	GCWGC	5 cut(s)	59, 599, 818, 893, 896
Tsp45I	GTSAC	3 cut(s)	293, 697, 860
TspDTI	ATGAA	5 cut(s)	158, 164, 252, 392, 392
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	2 cut(s)	619, 1057
Vha464I	CTTAAG	1 cut(s)	182
VpaK11BI	GGWCC	4 cut(s)	119, 439, 539, 572
XmiI	GTMKAC	1 cut(s)	806
XmnI	GAANNNNTTC	1 cut(s)	738
XspI	CTAG	1 cut(s)	621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.