Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Forward (+)

18936915 .. 18937558

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g20560.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGGTAAGGGAGGCCAATCCTGCAATGGCGTTGTTAGAGACGCCAAACCTGCTGAGCAGGAAAACATGGCTGCTTGGCTCGTTGATGTTAACACCATCAAGATCCTACCTTTCAAGCTCCCCGCTATTGGACCGAATGATGTTCGAATTCGGATTAAGGCTGTTGGCATTTGCGGAAGTGATATTCACTACCTCAAGACCATGAAATGTGGGGATTTTCAGGTTAAGGATCCGATGGTGATCGGACATGAGTGTGCTGGGATCGTAGACAAAGTTGGGAGCGAGGTGAAGCATCTGGTGCCTGGTGATCGTGTGGCTGTTGAACCCGGCATCAGCTGCGCACATTGCCAGCAGTGCAAAGGCGGCCGCTACAATCTATGCCCTGACATGAAGTTTTTCGCCACCCCACCTGTTGATGGTTCATTGGCGAATCAGATTGTGCACCCCGCGGATCGATCATGTTTATGGATAATTGCCAGAAAATGTGAGCTTGGAAGAAGGGGCAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

171

Amino Acids

18.38

Weight (kDa)

8.7

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	44 - 152	3.8e-28	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	340
Acc36I	ACCTGC	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	298
AccI	GTMKAC	1 cut(s)	267
AccII	CGCG	1 cut(s)	449
AciI	CCGC	6 cut(s)	123, 174, 363, 367, 447, 449
AclWI	GGATC	5 cut(s)	97, 224, 237, 269, 459
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	42
AfiI	CCNNNNNNNGG	2 cut(s)	128, 416
AgsI	TTSAA	2 cut(s)	115, 323
AjnI	CCWGG	1 cut(s)	301
AluBI	AGCT	3 cut(s)	118, 336, 490
AluI	AGCT	3 cut(s)	118, 336, 490
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	1 cut(s)	33
Alw44I	GTGCAC	1 cut(s)	440
AlwI	GGATC	5 cut(s)	97, 224, 237, 269, 459
AoxI	GGCC	2 cut(s)	13, 364
ApaLI	GTGCAC	1 cut(s)	440
ApeKI	GCWGC	2 cut(s)	71, 336
ApoI	RAATTY	1 cut(s)	147
Asp700I	GAANNNNTTC	1 cut(s)	395
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	1 cut(s)	131
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	3 cut(s)	250, 298, 317
AsuII	TTCGAA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	131
BaeGI	GKGCMC	1 cut(s)	444
BamHI	GGATCC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	444
BbvI	GCAGC	2 cut(s)	58, 323
BccI	CCATC	3 cut(s)	104, 229, 410
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	33
BfuAI	ACCTGC	1 cut(s)	58
BisI	GCNGC	4 cut(s)	72, 337, 364, 367
BlpI	GCTNAGC	1 cut(s)	54
BlsI	GCNGC	4 cut(s)	73, 338, 365, 368
Bme1390I	CCNGG	2 cut(s)	303, 327
Bme18I	GGWCC	1 cut(s)	131
BmgT120I	GGNCC	1 cut(s)	131
BmiI	GGNNCC	2 cut(s)	231, 300
BmrFI	CCNGG	2 cut(s)	303, 327
BmsI	GCATC	2 cut(s)	301, 339
Bpu1102I	GCTNAGC	1 cut(s)	54
Bpu14I	TTCGAA	1 cut(s)	145
BpuEI	CTTGAG	1 cut(s)	179
BpuMI	CCSGG	1 cut(s)	327
Bsa29I	ATCGAT	1 cut(s)	454
BsaBI	GATNNNNATC	1 cut(s)	239
BsaHI	GRCGYC	1 cut(s)	42
BsaJI	CCNNGG	1 cut(s)	447
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 416
Bse3DI	GCAATG	3 cut(s)	31, 343, 511
Bse8I	GATNNNNATC	1 cut(s)	239
BseBI	CCWGG	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	454
BseDI	CCNNGG	1 cut(s)	447
BseJI	GATNNNNATC	1 cut(s)	239
BseLI	CCNNNNNNNGG	2 cut(s)	128, 416
BseMI	GCAATG	3 cut(s)	31, 343, 511
BseMII	CTCAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	444
BseX3I	CGGCCG	1 cut(s)	364
BseXI	GCAGC	2 cut(s)	58, 323
BseYI	CCCAGC	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	449
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	2 cut(s)	15, 366
BshNI	GGYRCC	1 cut(s)	298
BshVI	ATCGAT	1 cut(s)	454
BsiEI	CGRYCG	1 cut(s)	367
BsiHKAI	GWGCWC	1 cut(s)	444
BsiSI	CCGG	1 cut(s)	327
BslI	CCNNNNNNNGG	2 cut(s)	128, 416
BsmAI	GTCTC	1 cut(s)	33
BsmBI	CGTCTC	1 cut(s)	33
BsnI	GGCC	2 cut(s)	15, 366
Bsp119I	TTCGAA	1 cut(s)	145
Bsp1286I	GDGCHC	1 cut(s)	444
Bsp143I	GATC	7 cut(s)	102, 229, 240, 261, 307, 451, 455
Bsp1720I	GCTNAGC	1 cut(s)	54
BspACI	CCGC	6 cut(s)	123, 174, 363, 367, 447, 449
BspANI	GGCC	2 cut(s)	15, 366
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	449
BspLI	GGNNCC	2 cut(s)	231, 300
BspMI	ACCTGC	1 cut(s)	58
BspPI	GGATC	5 cut(s)	97, 224, 237, 269, 459
BspT104I	TTCGAA	1 cut(s)	145
BspT107I	GGYRCC	1 cut(s)	298
BsrDI	GCAATG	3 cut(s)	31, 343, 511
BssECI	CCNNGG	1 cut(s)	447
BssMI	GATC	7 cut(s)	102, 229, 240, 261, 307, 451, 455
BssNI	GRCGYC	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	303
BstACI	GRCGYC	1 cut(s)	42
BstAPI	GCANNNNNTGC	2 cut(s)	298, 336
BstBI	TTCGAA	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	1 cut(s)	54
BstDSI	CCRYGG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	449
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	7 cut(s)	105, 232, 243, 264, 310, 454, 458
BstMAI	GTCTC	1 cut(s)	33
BstMBI	GATC	7 cut(s)	102, 229, 240, 261, 307, 451, 455
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	7 cut(s)	21, 50, 298, 336, 345, 354, 363
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	301, 325
BstSLI	GKGCMC	1 cut(s)	444
BstUI	CGCG	1 cut(s)	449
BstV1I	GCAGC	2 cut(s)	58, 323
BstX2I	RGATCY	2 cut(s)	102, 229
BstYI	RGATCY	2 cut(s)	102, 229
BstZI	CGGCCG	1 cut(s)	364
Bsu15I	ATCGAT	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	15, 366
BsuTUI	ATCGAT	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	447
BtsI	GCAGTG	1 cut(s)	359
BtsIMutI	CAGTG	1 cut(s)	359
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	1 cut(s)	350
CciNI	GCGGCCGC	1 cut(s)	364
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	1 cut(s)	131
Cfr42I	CCGCGG	1 cut(s)	450
ClaI	ATCGAT	1 cut(s)	454
CseI	GACGC	1 cut(s)	50
CviAII	CATG	5 cut(s)	67, 202, 248, 388, 459
CviJI	RGCY	9 cut(s)	15, 71, 79, 118, 161, 317, 336, 366, 490
CviKI_1	RGCY	9 cut(s)	15, 71, 79, 118, 161, 317, 336, 366, 490
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	7 cut(s)	104, 231, 242, 263, 309, 453, 457
DpnII	GATC	7 cut(s)	102, 229, 240, 261, 307, 451, 455
EaeI	YGGCCR	1 cut(s)	364
EagI	CGGCCG	1 cut(s)	364
EclXI	CGGCCG	1 cut(s)	364
Eco47I	GGWCC	1 cut(s)	131
Eco52I	CGGCCG	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	33
FaeI	CATG	5 cut(s)	70, 205, 251, 391, 462
FaiI	YATR	7 cut(s)	68, 203, 249, 379, 389, 460, 466
FatI	CATG	5 cut(s)	66, 201, 247, 387, 458
FauI	CCCGC	2 cut(s)	130, 454
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	4 cut(s)	72, 337, 364, 367
Fsp4HI	GCNGC	4 cut(s)	72, 337, 364, 367
FspI	TGCGCA	1 cut(s)	340
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	4 cut(s)	72, 337, 364, 367
GsaI	CCCAGC	1 cut(s)	261
HaeIII	GGCC	2 cut(s)	15, 366
HapII	CCGG	1 cut(s)	327
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	1 cut(s)	341
Hin1I	GRCGYC	1 cut(s)	42
Hin1II	CATG	5 cut(s)	70, 205, 251, 391, 462
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	1 cut(s)	430
HpaI	GTTAAC	1 cut(s)	91
HpaII	CCGG	1 cut(s)	327
HphI	GGTGA	3 cut(s)	250, 298, 317
Hpy166II	GTNNAC	3 cut(s)	91, 268, 442
Hpy188I	TCNGA	4 cut(s)	153, 234, 245, 435
Hpy188III	TCNNGA	2 cut(s)	100, 196
Hpy8I	GTNNAC	3 cut(s)	91, 268, 442
HpyAV	CCTTC	1 cut(s)	492
HpyCH4V	TGCA	3 cut(s)	24, 357, 442
HpyF10VI	GCNNNNNNNGC	7 cut(s)	21, 50, 298, 336, 345, 354, 363
HpyF3I	CTNAG	1 cut(s)	54
Hsp92I	GRCGYC	1 cut(s)	42
Hsp92II	CATG	5 cut(s)	70, 205, 251, 391, 462
HspAI	GCGC	1 cut(s)	339
KspAI	GTTAAC	1 cut(s)	91
KspI	CCGCGG	1 cut(s)	450
Kzo9I	GATC	7 cut(s)	102, 229, 240, 261, 307, 451, 455
LmnI	GCTCC	2 cut(s)	123, 279
Lsp1109I	GCAGC	2 cut(s)	58, 323
LweI	GCATC	2 cut(s)	301, 339
MalI	GATC	7 cut(s)	104, 231, 242, 263, 309, 453, 457
MboI	GATC	7 cut(s)	102, 229, 240, 261, 307, 451, 455
MboII	GAAGA	1 cut(s)	507
MflI	RGATCY	2 cut(s)	102, 229
MhlI	GDGCHC	1 cut(s)	444
MluCI	AATT	2 cut(s)	147, 471
MnlI	CCTC	3 cut(s)	5, 203, 277
MroXI	GAANNNNTTC	1 cut(s)	395
MseI	TTAA	3 cut(s)	90, 156, 225
MslI	CAYNNNNRTG	2 cut(s)	252, 463
MspA1I	CMGCKG	2 cut(s)	336, 449
MspI	CCGG	1 cut(s)	327
MspR9I	CCNGG	2 cut(s)	303, 327
MvaI	CCWGG	1 cut(s)	303
MvnI	CGCG	1 cut(s)	449
MwoI	GCNNNNNNNGC	7 cut(s)	21, 50, 298, 336, 345, 354, 363
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	7 cut(s)	102, 229, 240, 261, 307, 451, 455
NlaIII	CATG	5 cut(s)	70, 205, 251, 391, 462
NlaIV	GGNNCC	2 cut(s)	231, 300
NotI	GCGGCCGC	1 cut(s)	364
NsbI	TGCGCA	1 cut(s)	340
NspV	TTCGAA	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	395
PfeI	GAWTC	1 cut(s)	430
PkrI	GCNGC	4 cut(s)	73, 338, 365, 368
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	257
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	2 cut(s)	231, 300
PspPI	GGNCC	1 cut(s)	131
PsuI	RGATCY	2 cut(s)	102, 229
PvuII	CAGCTG	1 cut(s)	336
RseI	CAYNNNNRTG	2 cut(s)	252, 463
SacII	CCGCGG	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	90, 156, 225
SatI	GCNGC	4 cut(s)	72, 337, 364, 367
Sau3AI	GATC	7 cut(s)	102, 229, 240, 261, 307, 451, 455
Sau96I	GGNCC	1 cut(s)	131
ScrFI	CCNGG	2 cut(s)	303, 327
SduI	GDGCHC	1 cut(s)	444
SetI	ASST	9 cut(s)	52, 112, 120, 195, 225, 288, 338, 412, 492
SfaNI	GCATC	2 cut(s)	301, 339
Sfr303I	CCGCGG	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	145
SgrBI	CCGCGG	1 cut(s)	450
SinI	GGWCC	1 cut(s)	131
SmiMI	CAYNNNNRTG	2 cut(s)	252, 463
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	2 cut(s)	147, 471
SsiI	CCGC	6 cut(s)	123, 174, 363, 367, 447, 449
StyD4I	CCNGG	2 cut(s)	301, 325
TaqI	TCGA	2 cut(s)	145, 454
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	147, 471
TauI	GCSGC	2 cut(s)	366, 369
TfiI	GAWTC	1 cut(s)	430
Tru1I	TTAA	3 cut(s)	90, 156, 225
Tru9I	TTAA	3 cut(s)	90, 156, 225
TscAI	CASTG	1 cut(s)	359
TseI	GCWGC	2 cut(s)	71, 336
TspDTI	ATGAA	3 cut(s)	218, 404, 411
TspRI	CASTG	1 cut(s)	359
VneI	GTGCAC	1 cut(s)	440
VpaK11BI	GGWCC	1 cut(s)	131
XapI	RAATTY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	267
XmnI	GAANNNNTTC	1 cut(s)	395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.