pycom01g20580

Sorbitol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
18945060 .. 18946380
1321 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g20580.2

Sequence Viewer

Length: 1110 bp
ATGGGTAAGGGTGGGCAAAAGATTTATGGATTGGCTAAGAAAGCCAAACCTGTTCAGCAAGAAAACATGGCTGCTTATCTTGTTGATGTCAACACCATCAAGATCCTACCTTTCAAGCTCCCCAGTATCGGACCCAATGATGTCCGGATTCGGATTAAGGCGGTTGGTATTTGTGGAAGCGATGTTCACTACCTCAAGACCATGAAATGTGCGGATTTTGAGGTCAAGGAGCCGATGGTGATGGGACATGAGTGTGCTGGATCGATCGTAGACAAAGTTGGGAGTGAGGTGAAGCATCTGGTGCCTGGTGACCGGGTGGCGGTTGAGCCCGGTATCAGTTGCTCACGGTGTCAGCAGTGCAAAGGAGGGCAGTACAATCTTTGCCCCGACATGAAGTTTTTCGCCACCCCACCGGTTCATGGTTCCTTGGCAAATCAGATTGTGCATCCTGCGGATCTATGCTTCAAGCTGCCAGAGAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCCTTGAGTGTTGGAGTTCATGCATGTCGGCGAGCCAATGTTGGTCCCGAAACAACTGTTCTGATCATCGGAGCAGGGCCTATTGGTCTAGTTTCAGTTTTGGCCGCTCGTGCTTTCGGGGCACCAAGAATTGTCATTGTGGATATGGATGACAAGCGTTTAGCCATGGCAAAGTCTGTCGGCGCTGATGGCACCGTCAAAGTTTCAACAAAAATGGAGGATTTGGATGACGAAGTTGCCAAGATTAAAGAAGCCATGGAATCCGAGGTGGATGTGACCTTTGATTGTGTGGGTTTTAATAAAACCATGTCGACGGGTCTCAACGCCACTCGTCCCGGCGGCAAAGTCTGCCTCGTCGGAATAGGACACGGCATGATGACAGTGCCTCTCACTCCAGCTGCTGCCAGGGAGGTTGATGTGGTTGGTGTTTTCCGGTACAAGAACACATGGCCACTTTGCCTCGATTTTTTGAGAAGTGGGAAGATCGACGTGAAACCGCTTATTACTCACCGGTTTGGATTTACCGAGAAGGAGGTGGAAGAAGCCTTTGCTACCAGTGCTCGTGGGGGTGACGCCATCAAAGTCATGTTTAATCTATAG

Protein Analysis

370

Amino Acids

39.56

Weight (kDa)

7.9

Isoelectric Point (pI)

23.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 301, 631, 701
AccBSI CCGCTC 1 cut(s) 617
AccI GTMKAC 2 cut(s) 270, 821
AccIII TCCGGA 1 cut(s) 144
AciI CCGC 7 cut(s) 161, 212, 320, 452, 615, 849, 1007
AclWI GGATC 3 cut(s) 97, 268, 462
AcoI YGGCCR 2 cut(s) 612, 959
AcyI GRCGYC 1 cut(s) 1083
AfaI GTAC 2 cut(s) 374, 947
AfiI CCNNNNNNNGG 3 cut(s) 128, 319, 419
AgeI ACCGGT 2 cut(s) 412, 1020
AgsI TTSAA 3 cut(s) 115, 466, 717
AjiI CACGTC 1 cut(s) 1000
AjnI CCWGG 2 cut(s) 304, 914
AjuI GAANNNNNNNTTGG 2 cut(s) 470, 502
AloI GAACNNNNNNTCC 2 cut(s) 168, 200
AluBI AGCT 4 cut(s) 118, 469, 486, 908
AluI AGCT 4 cut(s) 118, 469, 486, 908
Alw21I GWGCWC 1 cut(s) 1072
Alw26I GTCTC 1 cut(s) 833
AlwI GGATC 3 cut(s) 97, 268, 462
AlwNI CAGNNNCTG 1 cut(s) 911
Aor13HI TCCGGA 1 cut(s) 144
AoxI GGCC 3 cut(s) 587, 612, 959
ApeKI GCWGC 4 cut(s) 71, 469, 908, 911
AsiGI ACCGGT 2 cut(s) 412, 1020
Asp700I GAANNNNTTC 1 cut(s) 398
AspLEI GCGC 1 cut(s) 695
AspS9I GGNCC 3 cut(s) 131, 554, 587
AsuC2I CCSGG 3 cut(s) 314, 330, 846
AsuHPI GGTGA 5 cut(s) 250, 301, 320, 1010, 1091
AvaII GGWCC 2 cut(s) 131, 554
BaeGI GKGCMC 1 cut(s) 634
BalI TGGCCA 1 cut(s) 961
BanI GGYRCC 3 cut(s) 301, 631, 701
BanII GRGCYC 2 cut(s) 330, 513
BauI CACGAG 2 cut(s) 618, 1071
Bbv12I GWGCWC 1 cut(s) 1072
BbvI GCAGC 4 cut(s) 58, 456, 895, 898
BccI CCATC 5 cut(s) 104, 229, 235, 692, 1094
BceAI ACGGC 1 cut(s) 895
BciT130I CCWGG 2 cut(s) 306, 916
BclI TGATCA 1 cut(s) 573
BcnI CCSGG 3 cut(s) 314, 330, 846
BcoDI GTCTC 1 cut(s) 833
BfaI CTAG 1 cut(s) 599
BfmI CTRYAG 1 cut(s) 1106
BfoI RGCGCY 1 cut(s) 696
BisI GCNGC 6 cut(s) 72, 470, 615, 850, 909, 912
BlsI GCNGC 6 cut(s) 73, 471, 616, 851, 910, 913
Bme1390I CCNGG 5 cut(s) 306, 314, 330, 846, 916
Bme18I GGWCC 2 cut(s) 131, 554
BmgBI CACGTC 1 cut(s) 1000
BmgT120I GGNCC 3 cut(s) 131, 554, 587
BmiI GGNNCC 7 cut(s) 133, 231, 303, 424, 556, 633, 703
BmrFI CCNGG 5 cut(s) 306, 314, 330, 846, 916
BmrI ACTGGG 1 cut(s) 117
BmsI GCATC 2 cut(s) 304, 454
BmuI ACTGGG 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 888
BpuEI CTTGAG 2 cut(s) 179, 535
BpuMI CCSGG 3 cut(s) 314, 330, 846
Bsa29I ATCGAT 1 cut(s) 263
BsaHI GRCGYC 1 cut(s) 1083
BsaI GGTCTC 1 cut(s) 833
BsaJI CCNNGG 5 cut(s) 426, 675, 765, 774, 915
BsaWI WCCGGW 4 cut(s) 144, 412, 942, 1020
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 319, 419
Bse118I RCCGGY 2 cut(s) 412, 1020
Bse1I ACTGG 2 cut(s) 123, 1065
Bse3DI GCAATG 1 cut(s) 507
BseAI TCCGGA 1 cut(s) 144
BseBI CCWGG 2 cut(s) 306, 916
BseCI ATCGAT 1 cut(s) 263
BseDI CCNNGG 5 cut(s) 426, 675, 765, 774, 915
BseGI GGATG 4 cut(s) 445, 664, 742, 787
BseLI CCNNNNNNNGG 3 cut(s) 128, 319, 419
BseMI GCAATG 1 cut(s) 507
BseNI ACTGG 2 cut(s) 123, 1065
BseSI GKGCMC 1 cut(s) 634
BseXI GCAGC 4 cut(s) 58, 456, 895, 898
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 3 cut(s) 589, 614, 961
BshNI GGYRCC 3 cut(s) 301, 631, 701
BshTI ACCGGT 2 cut(s) 412, 1020
BshVI ATCGAT 1 cut(s) 263
BsiEI CGRYCG 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 1072
BsiSI CCGG 7 cut(s) 145, 313, 330, 413, 846, 943, 1021
BslFI GGGAC 3 cut(s) 258, 540, 828
BslI CCNNNNNNNGG 3 cut(s) 128, 319, 419
BsmAI GTCTC 1 cut(s) 833
BsmFI GGGAC 3 cut(s) 258, 540, 828
BsnI GGCC 3 cut(s) 589, 614, 961
Bso31I GGTCTC 1 cut(s) 833
Bsp1286I GDGCHC 4 cut(s) 330, 513, 634, 1072
Bsp13I TCCGGA 1 cut(s) 144
Bsp143I GATC 6 cut(s) 102, 260, 264, 454, 573, 993
Bsp19I CCATGG 2 cut(s) 675, 765
BspACI CCGC 7 cut(s) 161, 212, 320, 452, 615, 849, 1007
BspANI GGCC 3 cut(s) 589, 614, 961
BspDI ATCGAT 1 cut(s) 263
BspEI TCCGGA 1 cut(s) 144
BspLI GGNNCC 7 cut(s) 133, 231, 303, 424, 556, 633, 703
BspPI GGATC 3 cut(s) 97, 268, 462
BspT107I GGYRCC 3 cut(s) 301, 631, 701
BspTNI GGTCTC 1 cut(s) 833
BsrBI CCGCTC 1 cut(s) 617
BsrDI GCAATG 1 cut(s) 507
BsrFI RCCGGY 2 cut(s) 412, 1020
BsrI ACTGG 2 cut(s) 123, 1065
BssAI RCCGGY 2 cut(s) 412, 1020
BssECI CCNNGG 5 cut(s) 426, 675, 765, 774, 915
BssMI GATC 6 cut(s) 102, 260, 264, 454, 573, 993
BssNI GRCGYC 1 cut(s) 1083
BssSI CACGAG 2 cut(s) 618, 1071
BssT1I CCWWGG 3 cut(s) 426, 675, 765
Bst2BI CACGAG 2 cut(s) 618, 1071
Bst2UI CCWGG 2 cut(s) 306, 916
Bst4CI ACNGT 4 cut(s) 348, 568, 706, 892
BstACI GRCGYC 1 cut(s) 1083
BstAPI GCANNNNNTGC 2 cut(s) 301, 858
BstC8I GCNNGC 1 cut(s) 543
BstDEI CTNAG 1 cut(s) 36
BstDSI CCRYGG 2 cut(s) 675, 765
BstEII GGTNACC 1 cut(s) 308
BstF5I GGATG 4 cut(s) 445, 664, 742, 787
BstH2I RGCGCY 1 cut(s) 696
BstHHI GCGC 1 cut(s) 695
BstKTI GATC 6 cut(s) 105, 263, 267, 457, 576, 996
BstMAI GTCTC 1 cut(s) 833
BstMBI GATC 6 cut(s) 102, 260, 264, 454, 573, 993
BstMCI CGRYCG 1 cut(s) 267
BstMWI GCNNNNNNNGC 7 cut(s) 41, 301, 620, 629, 699, 858, 1067
BstNI CCWGG 2 cut(s) 306, 916
BstNSI RCATGY 1 cut(s) 537
BstPI GGTNACC 1 cut(s) 308
BstSCI CCNGG 5 cut(s) 304, 312, 328, 844, 914
BstSFI CTRYAG 1 cut(s) 1106
BstSLI GKGCMC 1 cut(s) 634
BstV1I GCAGC 4 cut(s) 58, 456, 895, 898
BstX2I RGATCY 2 cut(s) 102, 454
BstYI RGATCY 2 cut(s) 102, 454
Bsu15I ATCGAT 1 cut(s) 263
BsuRI GGCC 3 cut(s) 589, 614, 961
BsuTUI ATCGAT 1 cut(s) 263
BtgI CCRYGG 2 cut(s) 675, 765
BtgZI GCGATG 1 cut(s) 195
BtrI CACGTC 1 cut(s) 1000
BtsCI GGATG 4 cut(s) 445, 664, 742, 787
BtsI GCAGTG 1 cut(s) 362
BtsIMutI CAGTG 3 cut(s) 362, 897, 1072
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 911
CfoI GCGC 1 cut(s) 695
Cfr10I RCCGGY 2 cut(s) 412, 1020
Cfr13I GGNCC 3 cut(s) 131, 554, 587
ClaI ATCGAT 1 cut(s) 263
CseI GACGC 1 cut(s) 1091
Csp6I GTAC 2 cut(s) 373, 946
CspAI ACCGGT 2 cut(s) 412, 1020
CviQI GTAC 2 cut(s) 373, 946
DdeI CTNAG 1 cut(s) 36
DpnI GATC 6 cut(s) 104, 262, 266, 456, 575, 995
DpnII GATC 6 cut(s) 102, 260, 264, 454, 573, 993
EaeI YGGCCR 2 cut(s) 612, 959
Eco130I CCWWGG 3 cut(s) 426, 675, 765
Eco24I GRGCYC 2 cut(s) 330, 513
Eco31I GGTCTC 1 cut(s) 833
Eco47I GGWCC 2 cut(s) 131, 554
Eco91I GGTNACC 1 cut(s) 308
EcoO109I RGGNCCY 1 cut(s) 587
EcoO65I GGTNACC 1 cut(s) 308
EcoRII CCWGG 2 cut(s) 304, 914
EcoT14I CCWWGG 3 cut(s) 426, 675, 765
EcoT22I ATGCAT 1 cut(s) 535
EcoT38I GRGCYC 2 cut(s) 330, 513
ErhI CCWWGG 3 cut(s) 426, 675, 765
FaqI GGGAC 3 cut(s) 258, 540, 828
FbaI TGATCA 1 cut(s) 573
FblI GTMKAC 2 cut(s) 270, 821
Fnu4HI GCNGC 6 cut(s) 72, 470, 615, 850, 909, 912
FokI GGATG 4 cut(s) 432, 671, 749, 794
FriOI GRGCYC 2 cut(s) 330, 513
Fsp4HI GCNGC 6 cut(s) 72, 470, 615, 850, 909, 912
FspBI CTAG 1 cut(s) 599
GlaI GCGC 1 cut(s) 694
GluI GCNGC 6 cut(s) 72, 470, 615, 850, 909, 912
GsuI CTGGAG 1 cut(s) 888
HaeII RGCGCY 1 cut(s) 696
HaeIII GGCC 3 cut(s) 589, 614, 961
HapII CCGG 7 cut(s) 145, 313, 330, 413, 846, 943, 1021
HgaI GACGC 1 cut(s) 1091
HhaI GCGC 1 cut(s) 695
Hin1I GRCGYC 1 cut(s) 1083
Hin6I GCGC 1 cut(s) 693
HinP1I GCGC 1 cut(s) 693
HincII GTYRAC 2 cut(s) 91, 822
HindII GTYRAC 2 cut(s) 91, 822
HinfI GANTC 2 cut(s) 148, 770
HpaII CCGG 7 cut(s) 145, 313, 330, 413, 846, 943, 1021
HphI GGTGA 5 cut(s) 250, 301, 320, 1010, 1091
Hpy166II GTNNAC 4 cut(s) 91, 187, 271, 822
Hpy188I TCNGA 7 cut(s) 131, 153, 438, 573, 581, 775, 869
Hpy188III TCNNGA 4 cut(s) 100, 145, 196, 557
Hpy8I GTNNAC 4 cut(s) 91, 187, 271, 822
Hpy99I CGWCG 3 cut(s) 826, 869, 1001
HpyAV CCTTC 2 cut(s) 488, 1033
HpyCH4III ACNGT 4 cut(s) 348, 568, 706, 892
HpyCH4IV ACGT 1 cut(s) 999
HpyCH4V TGCA 3 cut(s) 360, 445, 533
HpyF10VI GCNNNNNNNGC 7 cut(s) 41, 301, 620, 629, 699, 858, 1067
HpyF3I CTNAG 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 999
Hsp92I GRCGYC 1 cut(s) 1083
HspAI GCGC 1 cut(s) 693
Kpn2I TCCGGA 1 cut(s) 144
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 6 cut(s) 102, 260, 264, 454, 573, 993
LmnI GCTCC 3 cut(s) 123, 229, 581
Lsp1109I GCAGC 4 cut(s) 58, 456, 895, 898
LweI GCATC 2 cut(s) 304, 454
MaeI CTAG 1 cut(s) 599
MaeII ACGT 1 cut(s) 999
MaeIII GTNAC 3 cut(s) 308, 784, 1079
MalI GATC 6 cut(s) 104, 262, 266, 456, 575, 995
MbiI CCGCTC 1 cut(s) 617
MboI GATC 6 cut(s) 102, 260, 264, 454, 573, 993
MboII GAAGA 2 cut(s) 1003, 1061
MflI RGATCY 2 cut(s) 102, 454
MhlI GDGCHC 4 cut(s) 330, 513, 634, 1072
MlsI TGGCCA 1 cut(s) 961
MluCI AATT 1 cut(s) 639
MluNI TGGCCA 1 cut(s) 961
MmeI TCCRAC 2 cut(s) 502, 847
Mox20I TGGCCA 1 cut(s) 961
Mph1103I ATGCAT 1 cut(s) 535
MroI TCCGGA 1 cut(s) 144
MroXI GAANNNNTTC 1 cut(s) 398
MscI TGGCCA 1 cut(s) 961
MseI TTAA 4 cut(s) 156, 756, 807, 1101
MslI CAYNNNNRTG 1 cut(s) 252
Msp20I TGGCCA 1 cut(s) 961
MspA1I CMGCKG 1 cut(s) 908
MspI CCGG 7 cut(s) 145, 313, 330, 413, 846, 943, 1021
MspR9I CCNGG 5 cut(s) 306, 314, 330, 846, 916
MvaI CCWGG 2 cut(s) 306, 916
MwoI GCNNNNNNNGC 7 cut(s) 41, 301, 620, 629, 699, 858, 1067
NciI CCSGG 3 cut(s) 314, 330, 846
NcoI CCATGG 2 cut(s) 675, 765
NdeII GATC 6 cut(s) 102, 260, 264, 454, 573, 993
NlaIV GGNNCC 7 cut(s) 133, 231, 303, 424, 556, 633, 703
NmuCI GTSAC 3 cut(s) 308, 784, 1079
NsiI ATGCAT 1 cut(s) 535
NspI RCATGY 1 cut(s) 537
PdmI GAANNNNTTC 1 cut(s) 398
PfeI GAWTC 2 cut(s) 148, 770
PinAI ACCGGT 2 cut(s) 412, 1020
PkrI GCNGC 6 cut(s) 73, 471, 616, 851, 910, 913
Ple19I CGATCG 1 cut(s) 267
Psp6I CCWGG 2 cut(s) 304, 914
PspEI GGTNACC 1 cut(s) 308
PspGI CCWGG 2 cut(s) 304, 914
PspN4I GGNNCC 7 cut(s) 133, 231, 303, 424, 556, 633, 703
PspPI GGNCC 3 cut(s) 131, 554, 587
PstNI CAGNNNCTG 1 cut(s) 911
PsuI RGATCY 2 cut(s) 102, 454
PvuI CGATCG 1 cut(s) 267
PvuII CAGCTG 1 cut(s) 908
RsaI GTAC 2 cut(s) 374, 947
RsaNI GTAC 2 cut(s) 373, 946
RseI CAYNNNNRTG 1 cut(s) 252
SalI GTCGAC 1 cut(s) 820
SaqAI TTAA 4 cut(s) 156, 756, 807, 1101
SatI GCNGC 6 cut(s) 72, 470, 615, 850, 909, 912
Sau3AI GATC 6 cut(s) 102, 260, 264, 454, 573, 993
Sau96I GGNCC 3 cut(s) 131, 554, 587
ScrFI CCNGG 5 cut(s) 306, 314, 330, 846, 916
SduI GDGCHC 4 cut(s) 330, 513, 634, 1072
SfaNI GCATC 2 cut(s) 304, 454
SfcI CTRYAG 1 cut(s) 1106
SinI GGWCC 2 cut(s) 131, 554
SmiMI CAYNNNNRTG 1 cut(s) 252
SmlI CTYRAG 2 cut(s) 194, 514
SmoI CTYRAG 2 cut(s) 194, 514
Sse9I AATT 1 cut(s) 639
SsiI CCGC 7 cut(s) 161, 212, 320, 452, 615, 849, 1007
SspMI CTAG 1 cut(s) 599
StyD4I CCNGG 5 cut(s) 304, 312, 328, 844, 914
StyI CCWWGG 3 cut(s) 426, 675, 765
TaaI ACNGT 4 cut(s) 348, 568, 706, 892
TaiI ACGT 1 cut(s) 1002
TaqI TCGA 4 cut(s) 263, 821, 972, 996
TasI AATT 1 cut(s) 639
TatI WGTACW 1 cut(s) 372
TauI GCSGC 2 cut(s) 617, 852
TfiI GAWTC 2 cut(s) 148, 770
Tru1I TTAA 4 cut(s) 156, 756, 807, 1101
Tru9I TTAA 4 cut(s) 156, 756, 807, 1101
TscAI CASTG 3 cut(s) 362, 897, 1072
TseFI GTSAC 3 cut(s) 308, 784, 1079
TseI GCWGC 4 cut(s) 71, 469, 908, 911
Tsp45I GTSAC 3 cut(s) 308, 784, 1079
TspDTI ATGAA 4 cut(s) 218, 407, 407, 518
TspRI CASTG 3 cut(s) 362, 897, 1072
VpaK11BI GGWCC 2 cut(s) 131, 554
XceI RCATGY 1 cut(s) 537
XmiI GTMKAC 2 cut(s) 270, 821
XmnI GAANNNNTTC 1 cut(s) 398
XspI CTAG 1 cut(s) 599
Zsp2I ATGCAT 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.