Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Reverse (-)

15817263 .. 15820307

Gene Structure 3045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G240300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGGTAAGGGAGGAAAGCCTGATGGAGGTGATGGTTTTGAGGAAGCCAGCAGAGATGGTTGTGAACAAGAGAACATGGCTGTTTGGCTTCTTGGTGTTAACACCCTCAAAATCCAACCCTTCAAGCTCCCTAATCTCGGACCTCGTGATGTTTTAATTCGACTCAAGGCTGTTGGCATATGTGGCAGTGATGTTCACCACTTCAAGAACATGAGATGTGCAGATTTTGTGGTGAAAGAGCCAATGGTAATCGGGCATGAGTGTGCTGGGTTCGTAGAGGAAGTTGGGAGTGAGGTGAAGCATCTGGTGCCTGGTGACCGTGTGGCACTAGAGCCCGGCATCAATTGCAAGCGATGTGAGCTATGCAAACAAGGCCGATATAACCTATGCCCCGAGATGAAGTTTTTCGGGTTCCCTCCTCCAACTCATGGTTGCCTGGCAAATCAGGTTGTCCATCCTGGAGACCTGTGTTTTAAACTACCAGACAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCCTTAAGTGTTGGTGTTCATGCTTGTCGTCGGGCTAGTGTTGGTCCAGAAACAAATGTTTTGGTCATGGGAGCAGGACCTATAGGACTTGTTACATTGTTGGCTGCTCGTGCCTTCGAAGCACCTAGAATTGTCGTGGCAGATGTGAATGACCACTGTTTATCCGTTGCAAAGGCTCTTGGTGCGCATGAGATTGTCAAAGTTTCTACAAATATAGAGGAGGTTGCTGAAGAAGTTGCTAAAATAAAAGAAGCTATGGGAACTCGAGTGGATGTAAGCTTCGATTGTGCAGGGTTTAATAAAACCATGGCGACAGCTCTAAGTGCTACTGGTTCCGGTGGCAAAGTTTGCCTTGTGGGAATGGGCCAGAGGGAGCTGACTCTCCCACTCACTTCAGCTGCTGCCAGAGAGGTCGATGTGATTGGAATTTTCCGATACAAGAACACATGGCCCCTGTGCCTCGAATTGTTGAGAAGTAGTAAGGTTGATGTGAAGCCCCTGATAACACATCGTTTTGGATTCTCTCAAAAGGAAGTGGAAAAAGCATTTGAAACCAGTGCTGGTGGAGGCAATGCCATTAAGGTCATGTTTAATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

373

Amino Acids

39.9

Weight (kDa)

6.38

Isoelectric Point (pI)

25.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	705
AccB1I	GGYRCC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	428
AcsI	RAATTY	1 cut(s)	945
AcuI	CTGAAG	2 cut(s)	768, 897
AfiI	CCNNNNNNNGG	3 cut(s)	26, 137, 428
AflII	CTTAAG	1 cut(s)	523
AgsI	TTSAA	3 cut(s)	124, 205, 1070
AjnI	CCWGG	3 cut(s)	310, 435, 457
AluBI	AGCT	8 cut(s)	127, 361, 495, 773, 798, 836, 895, 917
AluI	AGCT	8 cut(s)	127, 361, 495, 773, 798, 836, 895, 917
Alw26I	GTCTC	1 cut(s)	456
AlwNI	CAGNNNCTG	1 cut(s)	920
Ama87I	CYCGRG	2 cut(s)	392, 783
AoxI	GGCC	3 cut(s)	373, 883, 968
ApeKI	GCWGC	3 cut(s)	623, 917, 920
ApoI	RAATTY	1 cut(s)	945
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	706
AspS9I	GGNCC	5 cut(s)	140, 563, 596, 883, 969
AsuC2I	CCSGG	1 cut(s)	336
AsuHPI	GGTGA	5 cut(s)	41, 188, 244, 307, 326
AsuII	TTCGAA	1 cut(s)	636
AvaI	CYCGRG	2 cut(s)	392, 783
AvaII	GGWCC	3 cut(s)	140, 563, 596
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	336, 522
BauI	CACGAG	2 cut(s)	144, 627
BbvI	GCAGC	3 cut(s)	610, 904, 907
BccI	CCATC	4 cut(s)	17, 26, 50, 462
BciT130I	CCWGG	3 cut(s)	312, 437, 459
BcnI	CCSGG	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	456
BfaI	CTAG	3 cut(s)	329, 555, 645
BfmI	CTRYAG	2 cut(s)	600, 1115
BfrI	CTTAAG	1 cut(s)	523
BisI	GCNGC	3 cut(s)	624, 918, 921
BlsI	GCNGC	3 cut(s)	625, 919, 922
Bme1390I	CCNGG	4 cut(s)	312, 336, 437, 459
Bme18I	GGWCC	3 cut(s)	140, 563, 596
BmeT110I	CYCGRG	2 cut(s)	392, 783
BmgT120I	GGNCC	5 cut(s)	140, 563, 596, 883, 969
BmiI	GGNNCC	4 cut(s)	309, 413, 853, 971
BmrFI	CCNGG	4 cut(s)	312, 336, 437, 459
BmsI	GCATC	2 cut(s)	310, 348
BpmI	CTGGAG	1 cut(s)	480
Bpu14I	TTCGAA	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	336
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	825
BsaWI	WCCGGW	1 cut(s)	854
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 137, 428
Bse1I	ACTGG	2 cut(s)	853, 1074
Bse3DI	GCAATG	2 cut(s)	516, 1096
BseBI	CCWGG	3 cut(s)	312, 437, 459
BseDI	CCNNGG	1 cut(s)	825
BseGI	GGATG	2 cut(s)	454, 796
BseLI	CCNNNNNNNGG	3 cut(s)	26, 137, 428
BseMI	GCAATG	2 cut(s)	516, 1096
BseNI	ACTGG	2 cut(s)	853, 1074
BseRI	GAGGAG	2 cut(s)	408, 752
BseXI	GCAGC	3 cut(s)	610, 904, 907
BseYI	CCCAGC	1 cut(s)	266
BsgI	GTGCAG	2 cut(s)	240, 828
BshFI	GGCC	3 cut(s)	375, 885, 970
BshNI	GGYRCC	1 cut(s)	307
BsiHKCI	CYCGRG	2 cut(s)	392, 783
BsiSI	CCGG	2 cut(s)	336, 855
BslI	CCNNNNNNNGG	3 cut(s)	26, 137, 428
BsmAI	GTCTC	1 cut(s)	456
BsnI	GGCC	3 cut(s)	375, 885, 970
Bso31I	GGTCTC	1 cut(s)	456
BsoBI	CYCGRG	2 cut(s)	392, 783
Bsp119I	TTCGAA	1 cut(s)	636
Bsp1286I	GDGCHC	2 cut(s)	336, 522
Bsp19I	CCATGG	1 cut(s)	825
BspANI	GGCC	3 cut(s)	375, 885, 970
BspLI	GGNNCC	4 cut(s)	309, 413, 853, 971
BspT104I	TTCGAA	1 cut(s)	636
BspT107I	GGYRCC	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	523
BspTNI	GGTCTC	1 cut(s)	456
BsrDI	GCAATG	2 cut(s)	516, 1096
BsrI	ACTGG	2 cut(s)	853, 1074
BssECI	CCNNGG	1 cut(s)	825
BssSI	CACGAG	2 cut(s)	144, 627
BssT1I	CCWWGG	1 cut(s)	825
Bst2BI	CACGAG	2 cut(s)	144, 627
Bst2UI	CCWGG	3 cut(s)	312, 437, 459
Bst4CI	ACNGT	2 cut(s)	320, 677
BstAFI	CTTAAG	1 cut(s)	523
BstAPI	GCANNNNNTGC	3 cut(s)	307, 345, 867
BstBI	TTCGAA	1 cut(s)	636
BstC8I	GCNNGC	2 cut(s)	49, 350
BstDEI	CTNAG	1 cut(s)	839
BstDSI	CCRYGG	1 cut(s)	825
BstEII	GGTNACC	1 cut(s)	314
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	2 cut(s)	454, 796
BstHHI	GCGC	1 cut(s)	706
BstMAI	GTCTC	1 cut(s)	456
BstNI	CCWGG	3 cut(s)	312, 437, 459
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	4 cut(s)	310, 334, 435, 457
BstSFI	CTRYAG	2 cut(s)	600, 1115
BstV1I	GCAGC	3 cut(s)	610, 904, 907
BsuRI	GGCC	3 cut(s)	375, 885, 970
BtgI	CCRYGG	1 cut(s)	825
BtgZI	GCGATG	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	454, 796
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	3 cut(s)	193, 673, 1081
Cac8I	GCNNGC	2 cut(s)	49, 350
CaiI	CAGNNNCTG	1 cut(s)	920
CfoI	GCGC	1 cut(s)	706
Cfr13I	GGNCC	5 cut(s)	140, 563, 596, 883, 969
DdeI	CTNAG	1 cut(s)	839
DraI	TTTAAA	1 cut(s)	475
Eco130I	CCWWGG	1 cut(s)	825
Eco24I	GRGCYC	2 cut(s)	336, 522
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	3 cut(s)	140, 563, 596
Eco57I	CTGAAG	2 cut(s)	768, 897
Eco88I	CYCGRG	2 cut(s)	392, 783
Eco91I	GGTNACC	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	596
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	310, 435, 457
EcoT14I	CCWWGG	1 cut(s)	825
EcoT38I	GRGCYC	2 cut(s)	336, 522
ErhI	CCWWGG	1 cut(s)	825
FalI	AAGNNNNNCTT	2 cut(s)	855, 887
FauNDI	CATATG	1 cut(s)	179
Fnu4HI	GCNGC	3 cut(s)	624, 918, 921
FokI	GGATG	2 cut(s)	441, 803
FriOI	GRGCYC	2 cut(s)	336, 522
Fsp4HI	GCNGC	3 cut(s)	624, 918, 921
FspAI	RTGCGCAY	1 cut(s)	705
FspBI	CTAG	3 cut(s)	329, 555, 645
FspI	TGCGCA	1 cut(s)	705
GlaI	GCGC	1 cut(s)	705
GluI	GCNGC	3 cut(s)	624, 918, 921
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	480
HaeIII	GGCC	3 cut(s)	375, 885, 970
HapII	CCGG	2 cut(s)	336, 855
HhaI	GCGC	1 cut(s)	706
Hin6I	GCGC	1 cut(s)	704
HinP1I	GCGC	1 cut(s)	704
HincII	GTYRAC	1 cut(s)	100
HindII	GTYRAC	1 cut(s)	100
HindIII	AAGCTT	1 cut(s)	796
HinfI	GANTC	3 cut(s)	162, 898, 1038
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	2 cut(s)	336, 855
HphI	GGTGA	5 cut(s)	41, 188, 244, 307, 326
Hpy166II	GTNNAC	3 cut(s)	65, 100, 196
Hpy188I	TCNGA	2 cut(s)	140, 953
Hpy188III	TCNNGA	3 cut(s)	146, 205, 566
Hpy8I	GTNNAC	3 cut(s)	65, 100, 196
Hpy99I	CGWCG	1 cut(s)	552
HpyAV	CCTTC	3 cut(s)	130, 497, 643
HpyCH4III	ACNGT	2 cut(s)	320, 677
HpyCH4V	TGCA	5 cut(s)	221, 348, 366, 689, 809
HpyF3I	CTNAG	1 cut(s)	839
HspAI	GCGC	1 cut(s)	704
KspAI	GTTAAC	1 cut(s)	100
LmnI	GCTCC	3 cut(s)	132, 590, 892
Lsp1109I	GCAGC	3 cut(s)	610, 904, 907
LweI	GCATC	2 cut(s)	310, 348
MaeI	CTAG	3 cut(s)	329, 555, 645
MaeIII	GTNAC	2 cut(s)	314, 610
MboII	GAAGA	1 cut(s)	761
MfeI	CAATTG	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	336, 522
MluCI	AATT	5 cut(s)	156, 343, 648, 945, 983
MlyI	GAGTC	2 cut(s)	156, 892
MmeI	TCCRAC	2 cut(s)	139, 446
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	7 cut(s)	99, 155, 474, 524, 816, 1098, 1110
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	917
MspCI	CTTAAG	1 cut(s)	523
MspI	CCGG	2 cut(s)	336, 855
MspR9I	CCNGG	4 cut(s)	312, 336, 437, 459
MunI	CAATTG	1 cut(s)	343
MvaI	CCWGG	3 cut(s)	312, 437, 459
NciI	CCSGG	1 cut(s)	336
NcoI	CCATGG	1 cut(s)	825
NdeI	CATATG	1 cut(s)	179
NlaIV	GGNNCC	4 cut(s)	309, 413, 853, 971
NmuCI	GTSAC	1 cut(s)	314
NsbI	TGCGCA	1 cut(s)	705
NspV	TTCGAA	1 cut(s)	636
PaeR7I	CTCGAG	1 cut(s)	783
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	1038
PflMI	CCANNNNNTGG	1 cut(s)	428
PfoI	TCCNGGA	1 cut(s)	457
PkrI	GCNGC	3 cut(s)	625, 919, 922
PleI	GAGTC	2 cut(s)	156, 892
PpsI	GAGTC	2 cut(s)	156, 892
PpuMI	RGGWCCY	1 cut(s)	596
Psp5II	RGGWCCY	1 cut(s)	596
Psp6I	CCWGG	3 cut(s)	310, 435, 457
PspEI	GGTNACC	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	3 cut(s)	310, 435, 457
PspN4I	GGNNCC	4 cut(s)	309, 413, 853, 971
PspPI	GGNCC	5 cut(s)	140, 563, 596, 883, 969
PspPPI	RGGWCCY	1 cut(s)	596
PspXI	VCTCGAGB	1 cut(s)	783
PstNI	CAGNNNCTG	1 cut(s)	920
PvuII	CAGCTG	1 cut(s)	917
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	7 cut(s)	99, 155, 474, 524, 816, 1098, 1110
SatI	GCNGC	3 cut(s)	624, 918, 921
Sau96I	GGNCC	5 cut(s)	140, 563, 596, 883, 969
SchI	GAGTC	2 cut(s)	156, 892
ScrFI	CCNGG	4 cut(s)	312, 336, 437, 459
SduI	GDGCHC	2 cut(s)	336, 522
SfaNI	GCATC	2 cut(s)	310, 348
SfcI	CTRYAG	2 cut(s)	600, 1115
Sfr274I	CTCGAG	1 cut(s)	783
SfuI	TTCGAA	1 cut(s)	636
SinI	GGWCC	3 cut(s)	140, 563, 596
SlaI	CTCGAG	1 cut(s)	783
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	164, 523, 783
SmoI	CTYRAG	3 cut(s)	164, 523, 783
Sse9I	AATT	5 cut(s)	156, 343, 648, 945, 983
SspMI	CTAG	3 cut(s)	329, 555, 645
StyD4I	CCNGG	4 cut(s)	310, 334, 435, 457
StyI	CCWWGG	1 cut(s)	825
TaaI	ACNGT	2 cut(s)	320, 677
TaqI	TCGA	6 cut(s)	160, 636, 784, 801, 933, 981
TasI	AATT	5 cut(s)	156, 343, 648, 945, 983
TfiI	GAWTC	1 cut(s)	1038
Tru1I	TTAA	7 cut(s)	99, 155, 474, 524, 816, 1098, 1110
Tru9I	TTAA	7 cut(s)	99, 155, 474, 524, 816, 1098, 1110
TscAI	CASTG	3 cut(s)	193, 680, 1081
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	3 cut(s)	623, 917, 920
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	413, 527
TspGWI	ACGGA	1 cut(s)	673
TspRI	CASTG	3 cut(s)	193, 680, 1081
Van91I	CCANNNNNTGG	1 cut(s)	428
Vha464I	CTTAAG	1 cut(s)	523
VpaK11BI	GGWCC	3 cut(s)	140, 563, 596
XagI	CCTNNNNNAGG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	945
XhoI	CTCGAG	1 cut(s)	783
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	3 cut(s)	329, 555, 645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.