Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Forward (+)

15994437 .. 15996971

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G142900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGGTAAGGGAGGAAAGCCTGATGGAGGTGATGGCTTTGGAGATGCAAGCAGGGATGGTGTTGAACAAGAGAACATGGCTGCTTGGCTTCTTGGTGTTAACACCCTCAAAATCCAACCTTTCAAGCTCCCTAATCTCGGACCCTGTGATGTTTTAGTTCGACTCAAGGCTGTTGGCATATGCGGCAGTGATGTTCACCACTTCAAGAACATGAGATGTGCAGATTTTGTGGTGAAAGAGCCAATGGTAATTGGGCATGAGTGTGCTGGGATCGTAGAGGAAGTTGGGAGTGAGGTGAAGCATCTGGTGCCTGGTGACCGTGTGGCAGTAGAGCCCGGCATCAATTGCAAGCGATGTGAGCTATGCAAACGAGGTCGATATAATCTATGCTCCGGGATGAAGTTTTTCGGGTCCCCTCCAACTCATGGTTGCCTGGCAAATCAGGTTGTCCATCCTGGAGACCTGTGTTTTAAACTACCAGACAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCCTTAAGTGTTGGTGTTCATGCTTGTCGTCGGGCTAATGTCTGTCCAGAAACAAATGTTTTGGTCATGGGAGCAGGACCTATCGGACTTGTTACAGTGTTGGCTGCTCGTGCCTTTGAAGCATCTAGAATTGTCGTGGCGGATGTGAATGACCACCGTTTATCTGTTGCAAAGGCTCTTGGTGCACATGAGATTGTCAAAGTTTCCACAAATATCGAGGAGGTTGCTGAAGAAGTGGCTAAGATAAAAGAAGCTATGGGAACTCGAGTGGATGTAAGCTTTGATTGTGCAGGGTTTAATAAAACCATGGCGACAGCTCTGAGTGCTACTGGTTCCGGTGGCAAAGTTTGCCTTGTGGGAATGGGCCAGAGAGAGTTGACTCTCCCACTCACGTCAGCTACTGCCAGAGAGGTCGATGTGATTGGAATTTTCCGATACAAGAACACATGGCCCTTGTGCCTTGAATTGTTGAGAAGTGGTAAGGTTGATGTGAAGCCCCTGATAACACATCGTTTTGGATTCTCCCAAACGGAAGTGGAAAAAGCATTTGAAACCAGTGCTGGTGGAGCCAATGCCATTAAGGTCATGTTTAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

372

Amino Acids

39.54

Weight (kDa)

6.79

Isoelectric Point (pI)

23.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	307
AccB7I	CCANNNNNTGG	1 cut(s)	425
AciI	CCGC	2 cut(s)	183, 656
AclWI	GGATC	1 cut(s)	278
AcsI	RAATTY	1 cut(s)	942
AcuI	CTGAAG	1 cut(s)	765
AfiI	CCNNNNNNNGG	3 cut(s)	26, 137, 425
AflII	CTTAAG	1 cut(s)	520
AgsI	TTSAA	6 cut(s)	65, 124, 205, 635, 980, 1067
AjiI	CACGTC	1 cut(s)	909
AjnI	CCWGG	3 cut(s)	310, 432, 454
AluBI	AGCT	7 cut(s)	127, 361, 492, 770, 795, 833, 914
AluI	AGCT	7 cut(s)	127, 361, 492, 770, 795, 833, 914
Alw21I	GWGCWC	1 cut(s)	703
Alw26I	GTCTC	1 cut(s)	453
Alw44I	GTGCAC	1 cut(s)	699
AlwI	GGATC	1 cut(s)	278
AlwNI	CAGNNNCTG	1 cut(s)	917
Ama87I	CYCGRG	1 cut(s)	780
AoxI	GGCC	2 cut(s)	880, 965
ApaLI	GTGCAC	1 cut(s)	699
ApeKI	GCWGC	2 cut(s)	80, 620
ApoI	RAATTY	1 cut(s)	942
Asp700I	GAANNNNTTC	1 cut(s)	404
AspS9I	GGNCC	5 cut(s)	140, 411, 593, 880, 966
AsuC2I	CCSGG	2 cut(s)	336, 394
AsuHPI	GGTGA	5 cut(s)	41, 188, 244, 307, 326
AvaI	CYCGRG	1 cut(s)	780
AvaII	GGWCC	3 cut(s)	140, 411, 593
BaeGI	GKGCMC	1 cut(s)	703
BanI	GGYRCC	1 cut(s)	307
BanII	GRGCYC	2 cut(s)	336, 519
BauI	CACGAG	1 cut(s)	624
Bbv12I	GWGCWC	1 cut(s)	703
BbvI	GCAGC	2 cut(s)	67, 607
BccI	CCATC	4 cut(s)	17, 26, 50, 459
BcgI	CGANNNNNNTGC	2 cut(s)	722, 756
BciT130I	CCWGG	3 cut(s)	312, 434, 456
BcnI	CCSGG	2 cut(s)	336, 394
BcoDI	GTCTC	1 cut(s)	453
BfaI	CTAG	1 cut(s)	642
BfrI	CTTAAG	1 cut(s)	520
BisI	GCNGC	3 cut(s)	81, 184, 621
BlsI	GCNGC	3 cut(s)	82, 185, 622
Bme1390I	CCNGG	5 cut(s)	312, 336, 394, 434, 456
Bme18I	GGWCC	3 cut(s)	140, 411, 593
BmeT110I	CYCGRG	1 cut(s)	780
BmgBI	CACGTC	1 cut(s)	909
BmgT120I	GGNCC	5 cut(s)	140, 411, 593, 880, 966
BmiI	GGNNCC	6 cut(s)	142, 309, 412, 413, 850, 1084
BmrFI	CCNGG	5 cut(s)	312, 336, 394, 434, 456
BmsI	GCATC	4 cut(s)	34, 310, 348, 647
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	149
BpuMI	CCSGG	2 cut(s)	336, 394
BsaI	GGTCTC	1 cut(s)	453
BsaJI	CCNNGG	1 cut(s)	822
BsaWI	WCCGGW	1 cut(s)	851
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 137, 425
Bse1I	ACTGG	2 cut(s)	850, 1071
Bse3DI	GCAATG	1 cut(s)	513
BseBI	CCWGG	3 cut(s)	312, 434, 456
BseDI	CCNNGG	1 cut(s)	822
BseGI	GGATG	5 cut(s)	61, 402, 451, 664, 793
BseLI	CCNNNNNNNGG	3 cut(s)	26, 137, 425
BseMI	GCAATG	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	827
BseNI	ACTGG	2 cut(s)	850, 1071
BseRI	GAGGAG	1 cut(s)	749
BseSI	GKGCMC	1 cut(s)	703
BseXI	GCAGC	2 cut(s)	67, 607
BseYI	CCCAGC	1 cut(s)	266
BsgI	GTGCAG	2 cut(s)	240, 825
BshFI	GGCC	2 cut(s)	882, 967
BshNI	GGYRCC	1 cut(s)	307
BsiHKAI	GWGCWC	1 cut(s)	703
BsiHKCI	CYCGRG	1 cut(s)	780
BsiSI	CCGG	3 cut(s)	336, 393, 852
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	26, 137, 425
BsmAI	GTCTC	1 cut(s)	453
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	2 cut(s)	882, 967
Bso31I	GGTCTC	1 cut(s)	453
BsoBI	CYCGRG	1 cut(s)	780
Bsp1286I	GDGCHC	3 cut(s)	336, 519, 703
Bsp143I	GATC	1 cut(s)	270
Bsp19I	CCATGG	1 cut(s)	822
BspACI	CCGC	2 cut(s)	183, 656
BspANI	GGCC	2 cut(s)	882, 967
BspCNI	CTCAG	1 cut(s)	828
BspLI	GGNNCC	6 cut(s)	142, 309, 412, 413, 850, 1084
BspPI	GGATC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	307
BspTI	CTTAAG	1 cut(s)	520
BspTNI	GGTCTC	1 cut(s)	453
BsrDI	GCAATG	1 cut(s)	513
BsrI	ACTGG	2 cut(s)	850, 1071
BssECI	CCNNGG	1 cut(s)	822
BssMI	GATC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	624
BssT1I	CCWWGG	1 cut(s)	822
Bst2BI	CACGAG	1 cut(s)	624
Bst2UI	CCWGG	3 cut(s)	312, 434, 456
Bst4CI	ACNGT	3 cut(s)	320, 613, 674
BstAFI	CTTAAG	1 cut(s)	520
BstAPI	GCANNNNNTGC	3 cut(s)	307, 345, 864
BstC8I	GCNNGC	2 cut(s)	49, 350
BstDEI	CTNAG	2 cut(s)	756, 836
BstDSI	CCRYGG	1 cut(s)	822
BstEII	GGTNACC	1 cut(s)	314
BstENI	CCTNNNNNAGG	1 cut(s)	24
BstF5I	GGATG	5 cut(s)	61, 402, 451, 664, 793
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	1 cut(s)	453
BstMBI	GATC	1 cut(s)	270
BstNI	CCWGG	3 cut(s)	312, 434, 456
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	5 cut(s)	310, 334, 392, 432, 454
BstSLI	GKGCMC	1 cut(s)	703
BstV1I	GCAGC	2 cut(s)	67, 607
BsuRI	GGCC	2 cut(s)	882, 967
BtgI	CCRYGG	1 cut(s)	822
BtgZI	GCGATG	1 cut(s)	367
BtrI	CACGTC	1 cut(s)	909
BtsCI	GGATG	5 cut(s)	61, 402, 451, 664, 793
BtsI	GCAGTG	1 cut(s)	193
BtsIMutI	CAGTG	3 cut(s)	193, 618, 1078
Cac8I	GCNNGC	2 cut(s)	49, 350
CaiI	CAGNNNCTG	1 cut(s)	917
Cfr13I	GGNCC	5 cut(s)	140, 411, 593, 880, 966
DdeI	CTNAG	2 cut(s)	756, 836
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
DraI	TTTAAA	1 cut(s)	472
EciI	GGCGGA	1 cut(s)	671
Eco130I	CCWWGG	1 cut(s)	822
Eco24I	GRGCYC	2 cut(s)	336, 519
Eco31I	GGTCTC	1 cut(s)	453
Eco47I	GGWCC	3 cut(s)	140, 411, 593
Eco57I	CTGAAG	1 cut(s)	765
Eco88I	CYCGRG	1 cut(s)	780
Eco91I	GGTNACC	1 cut(s)	314
EcoNI	CCTNNNNNAGG	1 cut(s)	24
EcoO109I	RGGNCCY	2 cut(s)	411, 593
EcoO65I	GGTNACC	1 cut(s)	314
EcoRII	CCWGG	3 cut(s)	310, 432, 454
EcoT14I	CCWWGG	1 cut(s)	822
EcoT38I	GRGCYC	2 cut(s)	336, 519
ErhI	CCWWGG	1 cut(s)	822
FalI	AAGNNNNNCTT	2 cut(s)	852, 884
FaqI	GGGAC	1 cut(s)	397
FauNDI	CATATG	1 cut(s)	179
Fnu4HI	GCNGC	3 cut(s)	81, 184, 621
FokI	GGATG	5 cut(s)	68, 409, 438, 671, 800
FriOI	GRGCYC	2 cut(s)	336, 519
Fsp4HI	GCNGC	3 cut(s)	81, 184, 621
FspBI	CTAG	1 cut(s)	642
GluI	GCNGC	3 cut(s)	81, 184, 621
GsaI	CCCAGC	1 cut(s)	270
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	882, 967
HapII	CCGG	3 cut(s)	336, 393, 852
HincII	GTYRAC	2 cut(s)	100, 894
HindII	GTYRAC	2 cut(s)	100, 894
HindIII	AAGCTT	1 cut(s)	793
HinfI	GANTC	3 cut(s)	162, 895, 1035
HpaI	GTTAAC	1 cut(s)	100
HpaII	CCGG	3 cut(s)	336, 393, 852
HphI	GGTGA	5 cut(s)	41, 188, 244, 307, 326
Hpy166II	GTNNAC	4 cut(s)	100, 196, 701, 894
Hpy188I	TCNGA	4 cut(s)	140, 602, 837, 950
Hpy188III	TCNNGA	3 cut(s)	205, 563, 642
Hpy8I	GTNNAC	4 cut(s)	100, 196, 701, 894
Hpy99I	CGWCG	1 cut(s)	549
HpyAV	CCTTC	1 cut(s)	494
HpyCH4III	ACNGT	3 cut(s)	320, 613, 674
HpyCH4IV	ACGT	1 cut(s)	908
HpyCH4V	TGCA	7 cut(s)	47, 221, 348, 366, 686, 701, 806
HpyF3I	CTNAG	2 cut(s)	756, 836
HpySE526I	ACGT	1 cut(s)	908
KflI	GGGWCCC	1 cut(s)	411
KspAI	GTTAAC	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	4 cut(s)	132, 395, 587, 1082
Lsp1109I	GCAGC	2 cut(s)	67, 607
LweI	GCATC	4 cut(s)	34, 310, 348, 647
MaeI	CTAG	1 cut(s)	642
MaeII	ACGT	1 cut(s)	908
MaeIII	GTNAC	2 cut(s)	314, 607
MalI	GATC	1 cut(s)	272
MboI	GATC	1 cut(s)	270
MboII	GAAGA	1 cut(s)	758
MfeI	CAATTG	1 cut(s)	343
MhlI	GDGCHC	3 cut(s)	336, 519, 703
MluCI	AATT	5 cut(s)	249, 343, 645, 942, 980
MlyI	GAGTC	2 cut(s)	156, 889
MmeI	TCCRAC	2 cut(s)	139, 443
MroXI	GAANNNNTTC	1 cut(s)	404
MseI	TTAA	6 cut(s)	99, 471, 521, 813, 1095, 1107
MslI	CAYNNNNRTG	1 cut(s)	261
MspCI	CTTAAG	1 cut(s)	520
MspI	CCGG	3 cut(s)	336, 393, 852
MspR9I	CCNGG	5 cut(s)	312, 336, 394, 434, 456
MunI	CAATTG	1 cut(s)	343
MvaI	CCWGG	3 cut(s)	312, 434, 456
NciI	CCSGG	2 cut(s)	336, 394
NcoI	CCATGG	1 cut(s)	822
NdeI	CATATG	1 cut(s)	179
NdeII	GATC	1 cut(s)	270
NlaIV	GGNNCC	6 cut(s)	142, 309, 412, 413, 850, 1084
NmuCI	GTSAC	1 cut(s)	314
PaeR7I	CTCGAG	1 cut(s)	780
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	1035
PflMI	CCANNNNNTGG	1 cut(s)	425
PfoI	TCCNGGA	2 cut(s)	392, 454
PkrI	GCNGC	3 cut(s)	82, 185, 622
PleI	GAGTC	2 cut(s)	156, 889
PpsI	GAGTC	2 cut(s)	156, 889
PpuMI	RGGWCCY	2 cut(s)	411, 593
Psp5II	RGGWCCY	2 cut(s)	411, 593
Psp6I	CCWGG	3 cut(s)	310, 432, 454
PspEI	GGTNACC	1 cut(s)	314
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	3 cut(s)	310, 432, 454
PspN4I	GGNNCC	6 cut(s)	142, 309, 412, 413, 850, 1084
PspPI	GGNCC	5 cut(s)	140, 411, 593, 880, 966
PspPPI	RGGWCCY	2 cut(s)	411, 593
PspXI	VCTCGAGB	1 cut(s)	780
PstNI	CAGNNNCTG	1 cut(s)	917
RseI	CAYNNNNRTG	1 cut(s)	261
SaqAI	TTAA	6 cut(s)	99, 471, 521, 813, 1095, 1107
SatI	GCNGC	3 cut(s)	81, 184, 621
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	5 cut(s)	140, 411, 593, 880, 966
SchI	GAGTC	2 cut(s)	156, 889
ScrFI	CCNGG	5 cut(s)	312, 336, 394, 434, 456
SduI	GDGCHC	3 cut(s)	336, 519, 703
SfaNI	GCATC	4 cut(s)	34, 310, 348, 647
Sfr274I	CTCGAG	1 cut(s)	780
SinI	GGWCC	3 cut(s)	140, 411, 593
SlaI	CTCGAG	1 cut(s)	780
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	164, 520, 780
SmoI	CTYRAG	3 cut(s)	164, 520, 780
Sse9I	AATT	5 cut(s)	249, 343, 645, 942, 980
SsiI	CCGC	2 cut(s)	183, 656
SspMI	CTAG	1 cut(s)	642
StyD4I	CCNGG	5 cut(s)	310, 334, 392, 432, 454
StyI	CCWWGG	1 cut(s)	822
TaaI	ACNGT	3 cut(s)	320, 613, 674
TaiI	ACGT	1 cut(s)	911
TaqI	TCGA	5 cut(s)	160, 376, 732, 781, 930
TasI	AATT	5 cut(s)	249, 343, 645, 942, 980
TauI	GCSGC	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	1035
Tru1I	TTAA	6 cut(s)	99, 471, 521, 813, 1095, 1107
Tru9I	TTAA	6 cut(s)	99, 471, 521, 813, 1095, 1107
TscAI	CASTG	3 cut(s)	193, 618, 1078
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	2 cut(s)	80, 620
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	2 cut(s)	413, 524
TspGWI	ACGGA	1 cut(s)	1061
TspRI	CASTG	3 cut(s)	193, 618, 1078
Van91I	CCANNNNNTGG	1 cut(s)	425
Vha464I	CTTAAG	1 cut(s)	520
VneI	GTGCAC	1 cut(s)	699
VpaK11BI	GGWCC	3 cut(s)	140, 411, 593
XagI	CCTNNNNNAGG	1 cut(s)	24
XapI	RAATTY	1 cut(s)	942
XbaI	TCTAGA	1 cut(s)	641
XhoI	CTCGAG	1 cut(s)	780
XmnI	GAANNNNTTC	1 cut(s)	404
XspI	CTAG	1 cut(s)	642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.