Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Reverse (-)

63552254 .. 63558064

Gene Structure 5811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG407600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAGGAGAACATGGCTGCTTGGCTTGTTGGTATCAACAACCTCAAGATTCAACCTTTCAAGCTCCCTGATCTTGGGACCTGGAGAGAGGCCATGAGATCTGCAAAATCTATAGTTAAAGAGCCAATGGTAATTGGGCATGAGTGTGCCGGGATCATAGAGGAAGTTGGGGCTGAGGTGAAGCATCTGGTGCCTGGTGACCGTGTGGCACTAGTGCCCGGTATCAGTTGCTGGCGGTGTGAGTCCTGCAAAGAAGGTCGATACAATCTATGCCCGGATATGAAGTTTTTCGCCACTCCACTGGTTCATGGTTCACTGGCAAACCAGGTTCTCCATCCTGAAGACCTGTGTTTTAAACTGCGAGAGAATGTGAGTTTGGAGGAAGGGGGCAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

132

Amino Acids

14.66

Weight (kDa)

5.56

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	32 - 121	2.2e-20	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	190
AciI	CCGC	1 cut(s)	235
AclWI	GGATC	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	360
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	53, 61
AhlI	ACTAGT	1 cut(s)	211
AjnI	CCWGG	3 cut(s)	80, 193, 324
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	1 cut(s)	161
AlwNI	CAGNNNCTG	1 cut(s)	231
AoxI	GGCC	1 cut(s)	90
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	287
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	3 cut(s)	151, 219, 275
AsuHPI	GGTGA	2 cut(s)	190, 209
AvaII	GGWCC	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	348
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	342
BciT130I	CCWGG	3 cut(s)	82, 195, 326
BcnI	CCSGG	3 cut(s)	151, 219, 275
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	111
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	6 cut(s)	82, 151, 195, 219, 275, 326
Bme18I	GGWCC	1 cut(s)	78
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	79, 192
BmrFI	CCNGG	6 cut(s)	82, 151, 195, 219, 275, 326
BmsI	GCATC	1 cut(s)	193
BpiI	GAAGAC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	103
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	3 cut(s)	151, 219, 275
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	306, 321
Bse3DI	GCAATG	1 cut(s)	397
BseBI	CCWGG	3 cut(s)	82, 195, 326
BseGI	GGATG	1 cut(s)	334
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	397
BseMII	CTCAG	1 cut(s)	165
BseNI	ACTGG	2 cut(s)	306, 321
BseRI	GAGGAG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	219
BseXI	GCAGC	1 cut(s)	4
BshFI	GGCC	1 cut(s)	92
BshNI	GGYRCC	1 cut(s)	190
BsiSI	CCGG	3 cut(s)	150, 219, 275
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	91
BsnI	GGCC	1 cut(s)	92
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	70, 98, 153
BspACI	CCGC	1 cut(s)	235
BspANI	GGCC	1 cut(s)	92
BspCNI	CTCAG	1 cut(s)	166
BspLI	GGNNCC	2 cut(s)	79, 192
BspPI	GGATC	1 cut(s)	161
BspT107I	GGYRCC	1 cut(s)	190
BsrDI	GCAATG	1 cut(s)	397
BsrI	ACTGG	2 cut(s)	306, 321
BssMI	GATC	3 cut(s)	70, 98, 153
Bst2UI	CCWGG	3 cut(s)	82, 195, 326
Bst4CI	ACNGT	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	174
BstEII	GGTNACC	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	334
BstKTI	GATC	3 cut(s)	73, 101, 156
BstMBI	GATC	3 cut(s)	70, 98, 153
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstNI	CCWGG	3 cut(s)	82, 195, 326
BstPI	GGTNACC	1 cut(s)	197
BstSCI	CCNGG	6 cut(s)	80, 149, 193, 217, 273, 324
BstSFI	CTRYAG	1 cut(s)	111
BstSLI	GKGCMC	1 cut(s)	219
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	348
BstX2I	RGATCY	1 cut(s)	98
BstXI	CCANNNNNNTGG	1 cut(s)	301
BstYI	RGATCY	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	92
BtsCI	GGATG	1 cut(s)	334
BtsIMutI	CAGTG	2 cut(s)	299, 314
Cac8I	GCNNGC	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	78
CsiI	ACCWGGT	1 cut(s)	324
CviAII	CATG	4 cut(s)	13, 94, 140, 308
CviJI	RGCY	6 cut(s)	17, 25, 64, 92, 124, 173
CviKI_1	RGCY	6 cut(s)	17, 25, 64, 92, 124, 173
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	3 cut(s)	72, 100, 155
DpnII	GATC	3 cut(s)	70, 98, 153
DraI	TTTAAA	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	360
Eco91I	GGTNACC	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	78
EcoO65I	GGTNACC	1 cut(s)	197
EcoRII	CCWGG	3 cut(s)	80, 193, 324
FaeI	CATG	4 cut(s)	16, 97, 143, 311
FaiI	YATR	8 cut(s)	14, 95, 113, 141, 158, 271, 281, 309
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	4 cut(s)	12, 93, 139, 307
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	212
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	1 cut(s)	92
HapII	CCGG	3 cut(s)	150, 219, 275
Hin1II	CATG	4 cut(s)	16, 97, 143, 311
HinfI	GANTC	2 cut(s)	49, 242
HpaII	CCGG	3 cut(s)	150, 219, 275
HphI	GGTGA	2 cut(s)	190, 209
Hpy166II	GTNNAC	1 cut(s)	314
Hpy188III	TCNNGA	2 cut(s)	46, 338
Hpy8I	GTNNAC	1 cut(s)	314
HpyAV	CCTTC	2 cut(s)	248, 377
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4V	TGCA	2 cut(s)	104, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
HpyF3I	CTNAG	1 cut(s)	174
Hsp92II	CATG	4 cut(s)	16, 97, 143, 311
Kzo9I	GATC	3 cut(s)	70, 98, 153
LmnI	GCTCC	1 cut(s)	69
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	193
MabI	ACCWGGT	1 cut(s)	324
MaeI	CTAG	1 cut(s)	212
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	3 cut(s)	72, 100, 155
MboI	GATC	3 cut(s)	70, 98, 153
MboII	GAAGA	1 cut(s)	353
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	1 cut(s)	132
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	5 cut(s)	53, 82, 154, 169, 373
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	2 cut(s)	117, 354
MslI	CAYNNNNRTG	1 cut(s)	144
MspI	CCGG	3 cut(s)	150, 219, 275
MspR9I	CCNGG	6 cut(s)	82, 151, 195, 219, 275, 326
MvaI	CCWGG	3 cut(s)	82, 195, 326
MwoI	GCNNNNNNNGC	1 cut(s)	190
NciI	CCSGG	3 cut(s)	151, 219, 275
NdeII	GATC	3 cut(s)	70, 98, 153
NlaIII	CATG	4 cut(s)	16, 97, 143, 311
NlaIV	GGNNCC	2 cut(s)	79, 192
NmuCI	GTSAC	1 cut(s)	197
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	19
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	78
Psp5II	RGGWCCY	1 cut(s)	78
Psp6I	CCWGG	3 cut(s)	80, 193, 324
PspEI	GGTNACC	1 cut(s)	197
PspGI	CCWGG	3 cut(s)	80, 193, 324
PspN4I	GGNNCC	2 cut(s)	79, 192
PspPI	GGNCC	1 cut(s)	78
PspPPI	RGGWCCY	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	98
RseI	CAYNNNNRTG	1 cut(s)	144
SaqAI	TTAA	2 cut(s)	117, 354
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	3 cut(s)	70, 98, 153
Sau96I	GGNCC	1 cut(s)	78
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	6 cut(s)	82, 151, 195, 219, 275, 326
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	8 cut(s)	45, 58, 66, 83, 180, 259, 330, 348
SexAI	ACCWGGT	1 cut(s)	324
SfaNI	GCATC	1 cut(s)	193
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	78
SmiMI	CAYNNNNRTG	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SpeI	ACTAGT	1 cut(s)	211
Sse9I	AATT	1 cut(s)	132
SsiI	CCGC	1 cut(s)	235
SspMI	CTAG	1 cut(s)	212
StyD4I	CCNGG	6 cut(s)	80, 149, 193, 217, 273, 324
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	1 cut(s)	259
TasI	AATT	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	117, 354
Tru9I	TTAA	2 cut(s)	117, 354
TscAI	CASTG	2 cut(s)	306, 321
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	2 cut(s)	296, 296
TspRI	CASTG	2 cut(s)	306, 321
VpaK11BI	GGWCC	1 cut(s)	78
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	1 cut(s)	212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.