Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Reverse (-)

4175122 .. 4177260

Gene Structure 2139 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026602

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGGGTAAGGGAGGGACCATGGAGGAGAACATGGCTGCTTGGCTTGTTGGTATCAACACCCTCAAGATTCAACCTTTCAAGCTCCCTGATCTTGGACCTCATGATGTTAGGATTCGGATGAAGGCTGTTGGGATATGTGGGAGTGATGTTCACTACCTCAAGGCCATGAGGTGTGCAGATTTTATAGTTAAGGAGCCAATGGTAATTGGACATGAGTGTGCCGGGATCATAGAGGAAGTTGGGGCTGGGGTGAAGCATCTGGTGCCTGGTGACCGTGTGGCACTAGAGCCCGGTATCAGTTGCTGGCGGTGTGAGTCCTGCAAAGAAGGTCGATACAATCTATGCCCGGATATGAAGTTTTTCGCCACTCCACCGGTTCATGGTTCACTGGCAAACCAGGTTGTCCATCCTGCAGACCTGTGTTTTAAACTGCCAGAGAATGTGAGTTTGGAGGAAGGGGCAATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCTTGTCGACGAGCTAATGTTGGCCCAGAAACAAATGTTTTGGTCATGGGAGCAGGACCCATAGGGCTTGTTACACTGCTAGCTGCTCGCGCTTTTGGGGCACCCAGAATTGTCATTGTGGACGTGGATGACCACCGTTTATCAGTTGCAAAGACTCTTGGTGCAGATGAGATTGTAAAAGTTTCAACAAACATCCAGGATGTAGCTGAAGAAGTGGTTCAGATAGGTAAAGCTATGGGAGCTGGAGTGGACGTGACCTTTGATTGTGCAGGCTTTGATAAAACCATGTCAACAGGTCTGCGTGCTACTCGTCCTGGTGGCAAAGTTTGCCTTGTGGGAATGGGTCACGATGCGATGACTCTCCCACTTACTTCAGCTTCTGCCAGGGAGGTAGATGTGATTGGAATTTTCCGATACAAGAACACATGGCCTCTATGCCTTGAGTTTTTGAGAAGTGGTAAGATTGATGTGAAGCCCCTCATAACGCATCGGTTTGGGTTTTCTCAAAAGGAGGTGGAAGACGCCTTCGCAACCAGTGCTCGTGGAGGCAATGCCATTAAGGTCATGTTTAATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

357

Amino Acids

38.18

Weight (kDa)

6.56

Isoelectric Point (pI)

24.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	32 - 146	5.2e-29	Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C	PF16912	153 - 282	1.8e-10	Glucose dehydrogenase C-terminus
ADH_zinc_N	PF00107	184 - 314	1.1e-27	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	217 - 347	6.5e-08	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	262, 592
AccI	GTMKAC	1 cut(s)	499
AccII	CGCG	1 cut(s)	582
AciI	CCGC	1 cut(s)	307
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	897
AcuI	CTGAAG	2 cut(s)	720, 849
AcyI	GRCGYC	1 cut(s)	1014
AfiI	CCNNNNNNNGG	2 cut(s)	92, 380
AgeI	ACCGGT	1 cut(s)	373
AgsI	TTSAA	3 cut(s)	71, 79, 678
AjiI	CACGTC	2 cut(s)	616, 745
AjnI	CCWGG	5 cut(s)	265, 396, 687, 805, 875
AjuI	GAANNNNNNNTTGG	2 cut(s)	431, 463
AluBI	AGCT	7 cut(s)	82, 506, 575, 698, 725, 734, 869
AluI	AGCT	7 cut(s)	82, 506, 575, 698, 725, 734, 869
Alw21I	GWGCWC	1 cut(s)	1033
AlwI	GGATC	1 cut(s)	233
AlwNI	CAGNNNCTG	2 cut(s)	303, 872
AoxI	GGCC	3 cut(s)	162, 514, 920
ApeKI	GCWGC	2 cut(s)	35, 575
ApoI	RAATTY	1 cut(s)	897
ArsI	GACNNNNNNTTYG	2 cut(s)	734, 766
AsiGI	ACCGGT	1 cut(s)	373
Asp700I	GAANNNNTTC	2 cut(s)	359, 708
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	4 cut(s)	15, 95, 515, 548
AsuC2I	CCSGG	3 cut(s)	223, 291, 347
AsuHPI	GGTGA	2 cut(s)	262, 281
AsuNHI	GCTAGC	1 cut(s)	571
AvaII	GGWCC	3 cut(s)	15, 95, 548
BaeGI	GKGCMC	1 cut(s)	595
BanI	GGYRCC	2 cut(s)	262, 592
BanII	GRGCYC	2 cut(s)	291, 474
BauI	CACGAG	1 cut(s)	1032
BbsI	GAAGAC	1 cut(s)	1017
Bbv12I	GWGCWC	1 cut(s)	1033
BbvI	GCAGC	2 cut(s)	22, 562
BccI	CCATC	1 cut(s)	414
BciT130I	CCWGG	5 cut(s)	267, 398, 689, 807, 877
BcnI	CCSGG	3 cut(s)	223, 291, 347
BfaI	CTAG	2 cut(s)	284, 572
BfmI	CTRYAG	1 cut(s)	411
BisI	GCNGC	2 cut(s)	36, 576
BlsI	GCNGC	2 cut(s)	37, 577
Bme1390I	CCNGG	8 cut(s)	223, 267, 291, 347, 398, 689, 807, 877
Bme18I	GGWCC	3 cut(s)	15, 95, 548
BmgBI	CACGTC	2 cut(s)	616, 745
BmgT120I	GGNCC	4 cut(s)	15, 95, 515, 548
BmiI	GGNNCC	5 cut(s)	16, 195, 264, 550, 594
BmrFI	CCNGG	8 cut(s)	223, 267, 291, 347, 398, 689, 807, 877
BmsI	GCATC	3 cut(s)	265, 832, 988
BmtI	GCTAGC	1 cut(s)	575
BpiI	GAAGAC	1 cut(s)	1017
BpmI	CTGGAG	1 cut(s)	756
BpuEI	CTTGAG	4 cut(s)	47, 143, 496, 953
BpuMI	CCSGG	3 cut(s)	223, 291, 347
BsaHI	GRCGYC	1 cut(s)	1014
BsaJI	CCNNGG	2 cut(s)	18, 876
BsaWI	WCCGGW	1 cut(s)	373
BsaXI	ACNNNNNCTCC	4 cut(s)	723, 729, 753, 759
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 380
Bse118I	RCCGGY	1 cut(s)	373
Bse1I	ACTGG	2 cut(s)	393, 1026
Bse3DI	GCAATG	2 cut(s)	468, 1048
BseBI	CCWGG	5 cut(s)	267, 398, 689, 807, 877
BseDI	CCNNGG	2 cut(s)	18, 876
BseGI	GGATG	5 cut(s)	123, 406, 625, 684, 697
BseLI	CCNNNNNNNGG	2 cut(s)	92, 380
BseMI	GCAATG	2 cut(s)	468, 1048
BseNI	ACTGG	2 cut(s)	393, 1026
BseRI	GAGGAG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	595
BseXI	GCAGC	2 cut(s)	22, 562
BseYI	CCCAGC	1 cut(s)	245
BsgI	GTGCAG	3 cut(s)	195, 675, 780
Bsh1236I	CGCG	1 cut(s)	582
BshFI	GGCC	3 cut(s)	164, 516, 922
BshNI	GGYRCC	2 cut(s)	262, 592
BshTI	ACCGGT	1 cut(s)	373
BsiHKAI	GWGCWC	1 cut(s)	1033
BsiSI	CCGG	4 cut(s)	222, 291, 347, 374
BslFI	GGGAC	1 cut(s)	28
BslI	CCNNNNNNNGG	2 cut(s)	92, 380
BsmFI	GGGAC	1 cut(s)	28
BsnI	GGCC	3 cut(s)	164, 516, 922
Bsp1286I	GDGCHC	4 cut(s)	291, 474, 595, 1033
Bsp143I	GATC	2 cut(s)	88, 225
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	1 cut(s)	307
BspANI	GGCC	3 cut(s)	164, 516, 922
BspFNI	CGCG	1 cut(s)	582
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	5 cut(s)	16, 195, 264, 550, 594
BspMAI	CTGCAG	1 cut(s)	415
BspOI	GCTAGC	1 cut(s)	575
BspPI	GGATC	1 cut(s)	233
BspT107I	GGYRCC	2 cut(s)	262, 592
BsrDI	GCAATG	2 cut(s)	468, 1048
BsrFI	RCCGGY	1 cut(s)	373
BsrI	ACTGG	2 cut(s)	393, 1026
BssAI	RCCGGY	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	18, 876
BssMI	GATC	2 cut(s)	88, 225
BssNI	GRCGYC	1 cut(s)	1014
BssSI	CACGAG	1 cut(s)	1032
BssT1I	CCWWGG	1 cut(s)	18
Bst2BI	CACGAG	1 cut(s)	1032
Bst2UI	CCWGG	5 cut(s)	267, 398, 689, 807, 877
Bst4CI	ACNGT	2 cut(s)	275, 629
BstACI	GRCGYC	1 cut(s)	1014
BstAPI	GCANNNNNTGC	3 cut(s)	262, 819, 1028
BstC8I	GCNNGC	5 cut(s)	305, 573, 580, 763, 795
BstDSI	CCRYGG	1 cut(s)	18
BstEII	GGTNACC	1 cut(s)	269
BstF5I	GGATG	5 cut(s)	123, 406, 625, 684, 697
BstFNI	CGCG	1 cut(s)	582
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	2 cut(s)	91, 228
BstMBI	GATC	2 cut(s)	88, 225
BstMWI	GCNNNNNNNGC	6 cut(s)	262, 581, 590, 731, 819, 1028
BstNI	CCWGG	5 cut(s)	267, 398, 689, 807, 877
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	8 cut(s)	221, 265, 289, 345, 396, 687, 805, 875
BstSFI	CTRYAG	1 cut(s)	411
BstSLI	GKGCMC	1 cut(s)	595
BstUI	CGCG	1 cut(s)	582
BstV1I	GCAGC	2 cut(s)	22, 562
BstV2I	GAAGAC	1 cut(s)	1017
BsuRI	GGCC	3 cut(s)	164, 516, 922
BtgI	CCRYGG	1 cut(s)	18
BtgZI	GCGATG	1 cut(s)	860
BtrI	CACGTC	2 cut(s)	616, 745
BtsCI	GGATG	5 cut(s)	123, 406, 625, 684, 697
BtsI	GCAGTG	1 cut(s)	566
BtsIMutI	CAGTG	3 cut(s)	386, 566, 1033
Cac8I	GCNNGC	5 cut(s)	305, 573, 580, 763, 795
CaiI	CAGNNNCTG	2 cut(s)	303, 872
CciI	TCATGA	1 cut(s)	100
CfoI	GCGC	1 cut(s)	584
Cfr10I	RCCGGY	1 cut(s)	373
Cfr13I	GGNCC	4 cut(s)	15, 95, 515, 548
CseI	GACGC	1 cut(s)	1022
CsiI	ACCWGGT	1 cut(s)	396
CspAI	ACCGGT	1 cut(s)	373
DpnI	GATC	2 cut(s)	90, 227
DpnII	GATC	2 cut(s)	88, 225
DraI	TTTAAA	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	18
Eco24I	GRGCYC	2 cut(s)	291, 474
Eco47I	GGWCC	3 cut(s)	15, 95, 548
Eco57I	CTGAAG	2 cut(s)	720, 849
Eco91I	GGTNACC	1 cut(s)	269
EcoO109I	RGGNCCY	1 cut(s)	548
EcoO65I	GGTNACC	1 cut(s)	269
EcoRII	CCWGG	5 cut(s)	265, 396, 687, 805, 875
EcoT14I	CCWWGG	1 cut(s)	18
EcoT38I	GRGCYC	2 cut(s)	291, 474
ErhI	CCWWGG	1 cut(s)	18
FalI	AAGNNNNNCTT	2 cut(s)	807, 839
FaqI	GGGAC	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	499
Fnu4HI	GCNGC	2 cut(s)	36, 576
FokI	GGATG	5 cut(s)	130, 393, 632, 671, 704
FriOI	GRGCYC	2 cut(s)	291, 474
Fsp4HI	GCNGC	2 cut(s)	36, 576
FspBI	CTAG	2 cut(s)	284, 572
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	2 cut(s)	36, 576
GsaI	CCCAGC	1 cut(s)	249
GsuI	CTGGAG	1 cut(s)	756
HaeIII	GGCC	3 cut(s)	164, 516, 922
HapII	CCGG	4 cut(s)	222, 291, 347, 374
HgaI	GACGC	1 cut(s)	1022
HhaI	GCGC	1 cut(s)	584
Hin1I	GRCGYC	1 cut(s)	1014
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HincII	GTYRAC	2 cut(s)	500, 783
HindII	GTYRAC	2 cut(s)	500, 783
HinfI	GANTC	5 cut(s)	67, 112, 314, 646, 850
HpaII	CCGG	4 cut(s)	222, 291, 347, 374
HphI	GGTGA	2 cut(s)	262, 281
Hpy166II	GTNNAC	6 cut(s)	151, 386, 500, 613, 742, 783
Hpy188I	TCNGA	3 cut(s)	117, 714, 905
Hpy188III	TCNNGA	3 cut(s)	64, 101, 839
Hpy8I	GTNNAC	6 cut(s)	151, 386, 500, 613, 742, 783
Hpy99I	CGWCG	1 cut(s)	504
HpyAV	CCTTC	4 cut(s)	115, 320, 449, 1027
HpyCH4III	ACNGT	2 cut(s)	275, 629
HpyCH4IV	ACGT	2 cut(s)	615, 744
HpyCH4V	TGCA	6 cut(s)	176, 321, 413, 641, 656, 761
HpyF10VI	GCNNNNNNNGC	6 cut(s)	262, 581, 590, 731, 819, 1028
HpySE526I	ACGT	2 cut(s)	615, 744
Hsp92I	GRCGYC	1 cut(s)	1014
HspAI	GCGC	1 cut(s)	582
Kzo9I	GATC	2 cut(s)	88, 225
LmnI	GCTCC	4 cut(s)	87, 193, 542, 731
Lsp1109I	GCAGC	2 cut(s)	22, 562
LweI	GCATC	3 cut(s)	265, 832, 988
MabI	ACCWGGT	1 cut(s)	396
MaeI	CTAG	2 cut(s)	284, 572
MaeII	ACGT	2 cut(s)	615, 744
MaeIII	GTNAC	4 cut(s)	269, 562, 745, 836
MalI	GATC	2 cut(s)	90, 227
MboI	GATC	2 cut(s)	88, 225
MboII	GAAGA	2 cut(s)	713, 1022
MhlI	GDGCHC	4 cut(s)	291, 474, 595, 1033
MluCI	AATT	3 cut(s)	204, 600, 897
MlyI	GAGTC	3 cut(s)	323, 640, 844
MroXI	GAANNNNTTC	2 cut(s)	359, 708
MseI	TTAA	4 cut(s)	189, 426, 1050, 1062
MslI	CAYNNNNRTG	1 cut(s)	216
MspI	CCGG	4 cut(s)	222, 291, 347, 374
MspR9I	CCNGG	8 cut(s)	223, 267, 291, 347, 398, 689, 807, 877
MvaI	CCWGG	5 cut(s)	267, 398, 689, 807, 877
MvnI	CGCG	1 cut(s)	582
MwoI	GCNNNNNNNGC	6 cut(s)	262, 581, 590, 731, 819, 1028
NciI	CCSGG	3 cut(s)	223, 291, 347
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	88, 225
NheI	GCTAGC	1 cut(s)	571
NlaIV	GGNNCC	5 cut(s)	16, 195, 264, 550, 594
NmuCI	GTSAC	3 cut(s)	269, 745, 836
PagI	TCATGA	1 cut(s)	100
PdmI	GAANNNNTTC	2 cut(s)	359, 708
PfeI	GAWTC	2 cut(s)	67, 112
PfoI	TCCNGGA	1 cut(s)	687
PinAI	ACCGGT	1 cut(s)	373
PkrI	GCNGC	2 cut(s)	37, 577
PleI	GAGTC	3 cut(s)	322, 640, 844
PpsI	GAGTC	3 cut(s)	322, 640, 844
PpuMI	RGGWCCY	1 cut(s)	548
Psp5II	RGGWCCY	1 cut(s)	548
Psp6I	CCWGG	5 cut(s)	265, 396, 687, 805, 875
PspEI	GGTNACC	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	245
PspGI	CCWGG	5 cut(s)	265, 396, 687, 805, 875
PspN4I	GGNNCC	5 cut(s)	16, 195, 264, 550, 594
PspPI	GGNCC	4 cut(s)	15, 95, 515, 548
PspPPI	RGGWCCY	1 cut(s)	548
PstI	CTGCAG	1 cut(s)	415
PstNI	CAGNNNCTG	2 cut(s)	303, 872
RseI	CAYNNNNRTG	1 cut(s)	216
SalI	GTCGAC	1 cut(s)	498
SaqAI	TTAA	4 cut(s)	189, 426, 1050, 1062
SatI	GCNGC	2 cut(s)	36, 576
Sau3AI	GATC	2 cut(s)	88, 225
Sau96I	GGNCC	4 cut(s)	15, 95, 515, 548
SchI	GAGTC	3 cut(s)	323, 640, 844
ScrFI	CCNGG	8 cut(s)	223, 267, 291, 347, 398, 689, 807, 877
SduI	GDGCHC	4 cut(s)	291, 474, 595, 1033
SexAI	ACCWGGT	1 cut(s)	396
SfaNI	GCATC	3 cut(s)	265, 832, 988
SfcI	CTRYAG	1 cut(s)	411
SinI	GGWCC	3 cut(s)	15, 95, 548
SmiMI	CAYNNNNRTG	1 cut(s)	216
SmlI	CTYRAG	4 cut(s)	62, 158, 475, 932
SmoI	CTYRAG	4 cut(s)	62, 158, 475, 932
Sse9I	AATT	3 cut(s)	204, 600, 897
SsiI	CCGC	1 cut(s)	307
SspMI	CTAG	2 cut(s)	284, 572
StyD4I	CCNGG	8 cut(s)	221, 265, 289, 345, 396, 687, 805, 875
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	2 cut(s)	275, 629
TaiI	ACGT	2 cut(s)	618, 747
TaqI	TCGA	2 cut(s)	331, 499
TasI	AATT	3 cut(s)	204, 600, 897
TfiI	GAWTC	2 cut(s)	67, 112
Tru1I	TTAA	4 cut(s)	189, 426, 1050, 1062
Tru9I	TTAA	4 cut(s)	189, 426, 1050, 1062
TscAI	CASTG	3 cut(s)	393, 573, 1033
TseFI	GTSAC	3 cut(s)	269, 745, 836
TseI	GCWGC	2 cut(s)	35, 575
Tsp45I	GTSAC	3 cut(s)	269, 745, 836
TspDTI	ATGAA	4 cut(s)	134, 368, 368, 479
TspRI	CASTG	3 cut(s)	393, 573, 1033
VpaK11BI	GGWCC	3 cut(s)	15, 95, 548
XapI	RAATTY	1 cut(s)	897
XmiI	GTMKAC	1 cut(s)	499
XmnI	GAANNNNTTC	2 cut(s)	359, 708
XspI	CTAG	2 cut(s)	284, 572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.