Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Forward (+)

4237656 .. 4254931

Gene Structure 17276 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00282130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGAGATCTGCAAAATCTATAGTTAAAGAGCCAAGGGTAATTGGGCATGAGTGTGCCGGGATCATAGAGGAAGTTGGGGCTGAGGTGAAGCATCTGGTGCCTGGTGACCGTGTGGCACTAGAGCCCGGTATCAGTTGCTGGCGGTGTGAGTCCTGCAAAGAAGGTCGATACAATCTATGCCCGGATATGAAGTTTTTCGCCACTCCACTGGTTCATGGTTCACTGGCAAACCAGGTTCTCCATCTTGAAGACCTGTGTTTTAAACTGCCAGAGAATGTGAGTTTGGAGGAAGGGGGCAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

101

Amino Acids

11.1

Weight (kDa)

5.52

Isoelectric Point (pI)

40.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	7 - 91	1.6e-19	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	2 cut(s)	100, 231
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AlwI	GGATC	1 cut(s)	68
AlwNI	CAGNNNCTG	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	194
AsuC2I	CCSGG	3 cut(s)	58, 126, 182
AsuHPI	GGTGA	2 cut(s)	97, 116
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	126
BbsI	GAAGAC	1 cut(s)	255
BbvCI	CCTCAGC	1 cut(s)	81
BccI	CCATC	1 cut(s)	249
BciT130I	CCWGG	2 cut(s)	102, 233
BcnI	CCSGG	3 cut(s)	58, 126, 182
BfaI	CTAG	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	18
BglII	AGATCT	1 cut(s)	5
Bme1390I	CCNGG	5 cut(s)	58, 102, 126, 182, 233
BmiI	GGNNCC	1 cut(s)	99
BmrFI	CCNGG	5 cut(s)	58, 102, 126, 182, 233
BmsI	GCATC	1 cut(s)	100
BpiI	GAAGAC	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	81
BpuMI	CCSGG	3 cut(s)	58, 126, 182
BsaJI	CCNNGG	1 cut(s)	32
Bse1I	ACTGG	2 cut(s)	213, 228
Bse3DI	GCAATG	1 cut(s)	304
BseBI	CCWGG	2 cut(s)	102, 233
BseDI	CCNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	72
BseNI	ACTGG	2 cut(s)	213, 228
BshNI	GGYRCC	1 cut(s)	97
BsiSI	CCGG	3 cut(s)	57, 126, 182
Bsp1286I	GDGCHC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	5, 60
BspACI	CCGC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	99
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	97
BsrDI	GCAATG	1 cut(s)	304
BsrI	ACTGG	2 cut(s)	213, 228
BssECI	CCNNGG	1 cut(s)	32
BssMI	GATC	2 cut(s)	5, 60
BssT1I	CCWWGG	1 cut(s)	32
Bst2UI	CCWGG	2 cut(s)	102, 233
Bst4CI	ACNGT	1 cut(s)	110
BstAPI	GCANNNNNTGC	1 cut(s)	97
BstC8I	GCNNGC	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	81
BstEII	GGTNACC	1 cut(s)	104
BstKTI	GATC	2 cut(s)	8, 63
BstMBI	GATC	2 cut(s)	5, 60
BstMWI	GCNNNNNNNGC	1 cut(s)	97
BstNI	CCWGG	2 cut(s)	102, 233
BstPI	GGTNACC	1 cut(s)	104
BstSCI	CCNGG	5 cut(s)	56, 100, 124, 180, 231
BstSFI	CTRYAG	1 cut(s)	18
BstV2I	GAAGAC	1 cut(s)	255
BstX2I	RGATCY	1 cut(s)	5
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	5
BtsIMutI	CAGTG	2 cut(s)	206, 221
Cac8I	GCNNGC	1 cut(s)	140
CaiI	CAGNNNCTG	1 cut(s)	138
CsiI	ACCWGGT	1 cut(s)	231
CviAII	CATG	2 cut(s)	47, 215
CviJI	RGCY	3 cut(s)	31, 80, 124
CviKI_1	RGCY	3 cut(s)	31, 80, 124
DdeI	CTNAG	1 cut(s)	81
DpnI	GATC	2 cut(s)	7, 62
DpnII	GATC	2 cut(s)	5, 60
DraI	TTTAAA	1 cut(s)	262
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	126
Eco91I	GGTNACC	1 cut(s)	104
EcoO65I	GGTNACC	1 cut(s)	104
EcoRII	CCWGG	2 cut(s)	100, 231
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	32
FaeI	CATG	2 cut(s)	50, 218
FaiI	YATR	6 cut(s)	20, 48, 65, 178, 188, 216
FatI	CATG	2 cut(s)	46, 214
FriOI	GRGCYC	1 cut(s)	126
FspBI	CTAG	1 cut(s)	119
HapII	CCGG	3 cut(s)	57, 126, 182
Hin1II	CATG	2 cut(s)	50, 218
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	3 cut(s)	57, 126, 182
HphI	GGTGA	2 cut(s)	97, 116
Hpy166II	GTNNAC	1 cut(s)	221
Hpy188III	TCNNGA	1 cut(s)	245
Hpy8I	GTNNAC	1 cut(s)	221
HpyAV	CCTTC	2 cut(s)	155, 284
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	2 cut(s)	11, 156
HpyF10VI	GCNNNNNNNGC	1 cut(s)	97
HpyF3I	CTNAG	1 cut(s)	81
Hsp92II	CATG	2 cut(s)	50, 218
Kzo9I	GATC	2 cut(s)	5, 60
LweI	GCATC	1 cut(s)	100
MabI	ACCWGGT	1 cut(s)	231
MaeI	CTAG	1 cut(s)	119
MaeIII	GTNAC	1 cut(s)	104
MalI	GATC	2 cut(s)	7, 62
MboI	GATC	2 cut(s)	5, 60
MboII	GAAGA	1 cut(s)	260
MflI	RGATCY	1 cut(s)	5
MhlI	GDGCHC	1 cut(s)	126
MluCI	AATT	1 cut(s)	39
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	3 cut(s)	61, 76, 280
MroXI	GAANNNNTTC	1 cut(s)	194
MseI	TTAA	2 cut(s)	24, 261
MslI	CAYNNNNRTG	1 cut(s)	51
MspI	CCGG	3 cut(s)	57, 126, 182
MspR9I	CCNGG	5 cut(s)	58, 102, 126, 182, 233
MvaI	CCWGG	2 cut(s)	102, 233
MwoI	GCNNNNNNNGC	1 cut(s)	97
NciI	CCSGG	3 cut(s)	58, 126, 182
NdeII	GATC	2 cut(s)	5, 60
NlaIII	CATG	2 cut(s)	50, 218
NlaIV	GGNNCC	1 cut(s)	99
NmuCI	GTSAC	1 cut(s)	104
PdmI	GAANNNNTTC	1 cut(s)	194
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
Psp6I	CCWGG	2 cut(s)	100, 231
PspEI	GGTNACC	1 cut(s)	104
PspGI	CCWGG	2 cut(s)	100, 231
PspN4I	GGNNCC	1 cut(s)	99
PstNI	CAGNNNCTG	1 cut(s)	138
PsuI	RGATCY	1 cut(s)	5
RseI	CAYNNNNRTG	1 cut(s)	51
SaqAI	TTAA	2 cut(s)	24, 261
Sau3AI	GATC	2 cut(s)	5, 60
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	5 cut(s)	58, 102, 126, 182, 233
SduI	GDGCHC	1 cut(s)	126
SetI	ASST	4 cut(s)	87, 166, 237, 255
SexAI	ACCWGGT	1 cut(s)	231
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	51
Sse9I	AATT	1 cut(s)	39
SsiI	CCGC	1 cut(s)	142
SspMI	CTAG	1 cut(s)	119
StyD4I	CCNGG	5 cut(s)	56, 100, 124, 180, 231
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	39
Tru1I	TTAA	2 cut(s)	24, 261
Tru9I	TTAA	2 cut(s)	24, 261
TscAI	CASTG	2 cut(s)	213, 228
TseFI	GTSAC	1 cut(s)	104
Tsp45I	GTSAC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	203, 203
TspRI	CASTG	2 cut(s)	213, 228
XmnI	GAANNNNTTC	1 cut(s)	194
XspI	CTAG	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.