MD01G1194600.v1.1

Sorbitol dehydrogenase-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
Physical Location & Seq
Forward (+)
29333895 .. 29335934
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1194600.v1.1.491

Sequence Viewer

Length: 1077 bp
ATGGGTAAGGGAGGCAAAGCTGCTGAGCCAGAAAACATGGGTGCTTGGCTTCTTGGTGTTAACAACATCAAGATCCAACCTTTCAAGCTTCCCAGTGTTGGGGTCCATGATGTTCGAGTTCGGATCAAGGCTGTCGGCATTTGTGGAAGTGATGTTCACTACCTCAAGACCATGAAGTGTGCAGATTTTGAAGTTAAAGAGCCAATGGTAATTGGCCATGAGTGTGCTGGGATCGTTGAGGAAATCGGGGCCGAGGTGATGCATCTCGCTCTGGGCGATCGTGTGGCAGTAGAACCTGGAATCAGCTGCACACGGTGCCAGCAGTGCAAAGGTGGAAGGTACAATCTTTGCCCGGACATGAAGTTTTTTGCCACCCCTCCGGTTCATGGTTCCTTGGCAAATCAGATTGTGCATCCTGCGGATCTGTGCTTTAAGCTCCCGGAGAATGTGAGTTTGGAGGAAGGGGCAATGTGTGAGCCCTTGAGTGTTGGGGTTCATGCTTGCCGGAGAGCCAATGTGGGACCGGAATCAACTGTCCTGATCATCGGAGCCGGCCCCATCGGTCTGGTTTCGGTGCTGGCTGCCCGTGCATTTGGGTCACCCAGAATTGTCATTGTGGATATGGATGACCAGCGTCTAGCCATGGCGCAGTCTCTCGGTGCTAATGACACTGTCAAAGTTTCGACAAAAATGGAGGATTTGGATGATGAAATTGCCCAGATTAAGACAGCCATGAAATCCAACGTGGATGTGAGCTTCGATTGTGTCGGTTTTAACAAAACCATGTCAACAGCTCTTGGTGCCACCCGTCCCGGCGGCAAAGTTTGCCTTGTCGGAATGGGACACGGCACGATGACAGTCCCACTTACTCCGGCTGCTGCCAGGGAGGTTGATGTTGTTGGAATTTTCCGGTACAAGAACACATGGCCTCTTTGCCTCGAGTTTTTGAGAAGTGGGAAGATCGACGTGAAGCCGCTCATTACGCACCGCTTTGGGTTTAACCAAAAGGAGGTGGAAGAAGCATTTGAAACCAGTGCCCGTGGGGGAAATGCCATTAAGGTCATGTTTATTTTGTGA

Protein Analysis

359

Amino Acids

38.38

Weight (kDa)

6.75

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 36 - 148 1.7e-27 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 155 - 284 1e-08 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 186 - 316 8.8e-28 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 233 - 349 1e-06 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 315, 800
AccBSI CCGCTC 1 cut(s) 976
AciI CCGC 4 cut(s) 419, 816, 974, 988
AclWI GGATC 4 cut(s) 67, 131, 239, 429
AcoI YGGCCR 1 cut(s) 214
AcsI RAATTY 1 cut(s) 903
AdeI CACNNNGTG 1 cut(s) 315
AfaI GTAC 2 cut(s) 341, 914
AfiI CCNNNNNNNGG 4 cut(s) 98, 99, 386, 1009
AgsI TTSAA 3 cut(s) 85, 191, 1028
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 2 cut(s) 295, 881
AjuI GAANNNNNNNTTGG 2 cut(s) 437, 469
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
AluBI AGCT 6 cut(s) 20, 88, 306, 436, 756, 794
AluI AGCT 6 cut(s) 20, 88, 306, 436, 756, 794
Alw26I GTCTC 1 cut(s) 657
AlwI GGATC 4 cut(s) 67, 131, 239, 429
Ama87I CYCGRG 1 cut(s) 938
AoxI GGCC 4 cut(s) 214, 249, 553, 926
ApeKI GCWGC 5 cut(s) 20, 306, 581, 875, 878
ApoI RAATTY 1 cut(s) 903
AspLEI GCGC 1 cut(s) 649
AspS9I GGNCC 4 cut(s) 103, 249, 521, 554
AsuC2I CCSGG 3 cut(s) 353, 440, 813
AsuHPI GGTGA 2 cut(s) 268, 591
AvaI CYCGRG 1 cut(s) 938
AvaII GGWCC 2 cut(s) 103, 521
BaeGI GKGCMC 1 cut(s) 1039
BalI TGGCCA 1 cut(s) 216
BanI GGYRCC 2 cut(s) 315, 800
BanII GRGCYC 1 cut(s) 480
BbvI GCAGC 5 cut(s) 7, 293, 568, 862, 865
BccI CCATC 1 cut(s) 566
BceAI ACGGC 1 cut(s) 862
BciT130I CCWGG 2 cut(s) 297, 883
BclI TGATCA 1 cut(s) 540
BcnI CCSGG 3 cut(s) 353, 440, 813
BcoDI GTCTC 1 cut(s) 657
BfaI CTAG 1 cut(s) 638
BisI GCNGC 7 cut(s) 21, 307, 582, 817, 876, 879, 974
BlpI GCTNAGC 1 cut(s) 24
BlsI GCNGC 7 cut(s) 22, 308, 583, 818, 877, 880, 975
Bme1390I CCNGG 5 cut(s) 297, 353, 440, 813, 883
Bme18I GGWCC 2 cut(s) 103, 521
BmeT110I CYCGRG 1 cut(s) 938
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 4 cut(s) 103, 249, 521, 554
BmiI GGNNCC 8 cut(s) 104, 250, 317, 391, 522, 550, 556, 802
BmrFI CCNGG 5 cut(s) 297, 353, 440, 813, 883
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 3 cut(s) 249, 271, 421
BmuI ACTGGG 1 cut(s) 87
BoxI GACNNNNGTC 1 cut(s) 633
Bpu1102I GCTNAGC 1 cut(s) 24
BpuEI CTTGAG 2 cut(s) 149, 502
BpuMI CCSGG 3 cut(s) 353, 440, 813
BsaJI CCNNGG 5 cut(s) 252, 393, 642, 882, 1039
BsaWI WCCGGW 3 cut(s) 379, 523, 909
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 99, 386, 1009
Bse118I RCCGGY 1 cut(s) 551
Bse1I ACTGG 2 cut(s) 93, 1032
Bse3DI GCAATG 1 cut(s) 474
BseBI CCWGG 2 cut(s) 297, 883
BseDI CCNNGG 5 cut(s) 252, 393, 642, 882, 1039
BseGI GGATG 4 cut(s) 412, 631, 709, 754
BseLI CCNNNNNNNGG 4 cut(s) 98, 99, 386, 1009
BseMI GCAATG 1 cut(s) 474
BseMII CTCAG 1 cut(s) 15
BseNI ACTGG 2 cut(s) 93, 1032
BseSI GKGCMC 1 cut(s) 1039
BseXI GCAGC 5 cut(s) 7, 293, 568, 862, 865
BseYI CCCAGC 1 cut(s) 227
BsgI GTGCAG 2 cut(s) 201, 292
Bsh1285I CGRYCG 1 cut(s) 280
BshFI GGCC 4 cut(s) 216, 251, 555, 928
BshNI GGYRCC 2 cut(s) 315, 800
BsiEI CGRYCG 1 cut(s) 280
BsiHKCI CYCGRG 1 cut(s) 938
BsiSI CCGG 9 cut(s) 353, 380, 440, 505, 524, 552, 813, 872, 910
BslFI GGGAC 4 cut(s) 534, 795, 845, 855
BslI CCNNNNNNNGG 4 cut(s) 98, 99, 386, 1009
BsmAI GTCTC 1 cut(s) 657
BsmFI GGGAC 4 cut(s) 534, 795, 845, 855
BsnI GGCC 4 cut(s) 216, 251, 555, 928
BsoBI CYCGRG 1 cut(s) 938
Bsp1286I GDGCHC 2 cut(s) 480, 1039
Bsp143I GATC 7 cut(s) 72, 123, 231, 277, 421, 540, 960
Bsp1720I GCTNAGC 1 cut(s) 24
Bsp19I CCATGG 1 cut(s) 642
BspACI CCGC 4 cut(s) 419, 816, 974, 988
BspANI GGCC 4 cut(s) 216, 251, 555, 928
BspCNI CTCAG 1 cut(s) 16
BspLI GGNNCC 8 cut(s) 104, 250, 317, 391, 522, 550, 556, 802
BspPI GGATC 4 cut(s) 67, 131, 239, 429
BspT107I GGYRCC 2 cut(s) 315, 800
BsrBI CCGCTC 1 cut(s) 976
BsrDI GCAATG 1 cut(s) 474
BsrFI RCCGGY 1 cut(s) 551
BsrI ACTGG 2 cut(s) 93, 1032
BssAI RCCGGY 1 cut(s) 551
BssECI CCNNGG 5 cut(s) 252, 393, 642, 882, 1039
BssMI GATC 7 cut(s) 72, 123, 231, 277, 421, 540, 960
BssT1I CCWWGG 2 cut(s) 393, 642
Bst2UI CCWGG 2 cut(s) 297, 883
Bst4CI ACNGT 4 cut(s) 315, 535, 673, 859
BstAPI GCANNNNNTGC 2 cut(s) 315, 825
BstC8I GCNNGC 4 cut(s) 320, 502, 553, 579
BstDEI CTNAG 1 cut(s) 24
BstDSI CCRYGG 2 cut(s) 642, 1039
BstEII GGTNACC 1 cut(s) 597
BstF5I GGATG 4 cut(s) 412, 631, 709, 754
BstHHI GCGC 1 cut(s) 649
BstKTI GATC 7 cut(s) 75, 126, 234, 280, 424, 543, 963
BstMAI GTCTC 1 cut(s) 657
BstMBI GATC 7 cut(s) 72, 123, 231, 277, 421, 540, 960
BstMCI CGRYCG 1 cut(s) 280
BstMWI GCNNNNNNNGC 6 cut(s) 315, 324, 587, 800, 825, 982
BstNI CCWGG 2 cut(s) 297, 883
BstPAI GACNNNNGTC 1 cut(s) 633
BstPI GGTNACC 1 cut(s) 597
BstSCI CCNGG 5 cut(s) 295, 351, 438, 811, 881
BstSLI GKGCMC 1 cut(s) 1039
BstV1I GCAGC 5 cut(s) 7, 293, 568, 862, 865
BstX2I RGATCY 2 cut(s) 72, 421
BstXI CCANNNNNNTGG 1 cut(s) 565
BstYI RGATCY 2 cut(s) 72, 421
BsuRI GGCC 4 cut(s) 216, 251, 555, 928
BtgI CCRYGG 2 cut(s) 642, 1039
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 4 cut(s) 412, 631, 709, 754
BtsI GCAGTG 1 cut(s) 329
BtsIMutI CAGTG 4 cut(s) 100, 329, 669, 1039
Cac8I GCNNGC 4 cut(s) 320, 502, 553, 579
CfoI GCGC 1 cut(s) 649
Cfr10I RCCGGY 1 cut(s) 551
Cfr13I GGNCC 4 cut(s) 103, 249, 521, 554
CseI GACGC 1 cut(s) 623
Csp6I GTAC 2 cut(s) 340, 913
CviQI GTAC 2 cut(s) 340, 913
DdeI CTNAG 1 cut(s) 24
DpnI GATC 7 cut(s) 74, 125, 233, 279, 423, 542, 962
DpnII GATC 7 cut(s) 72, 123, 231, 277, 421, 540, 960
DraIII CACNNNGTG 1 cut(s) 315
EaeI YGGCCR 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 393, 642
Eco24I GRGCYC 1 cut(s) 480
Eco47I GGWCC 2 cut(s) 103, 521
Eco88I CYCGRG 1 cut(s) 938
Eco91I GGTNACC 1 cut(s) 597
EcoO65I GGTNACC 1 cut(s) 597
EcoRII CCWGG 2 cut(s) 295, 881
EcoT14I CCWWGG 2 cut(s) 393, 642
EcoT22I ATGCAT 1 cut(s) 264
EcoT38I GRGCYC 1 cut(s) 480
ErhI CCWWGG 2 cut(s) 393, 642
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FaqI GGGAC 4 cut(s) 534, 795, 845, 855
FbaI TGATCA 1 cut(s) 540
Fnu4HI GCNGC 7 cut(s) 21, 307, 582, 817, 876, 879, 974
FokI GGATG 4 cut(s) 399, 638, 716, 761
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 7 cut(s) 21, 307, 582, 817, 876, 879, 974
FspBI CTAG 1 cut(s) 638
GlaI GCGC 1 cut(s) 648
GluI GCNGC 7 cut(s) 21, 307, 582, 817, 876, 879, 974
GsaI CCCAGC 1 cut(s) 231
HaeIII GGCC 4 cut(s) 216, 251, 555, 928
HapII CCGG 9 cut(s) 353, 380, 440, 505, 524, 552, 813, 872, 910
HgaI GACGC 1 cut(s) 623
HhaI GCGC 1 cut(s) 649
Hin6I GCGC 1 cut(s) 647
HinP1I GCGC 1 cut(s) 647
HincII GTYRAC 2 cut(s) 61, 789
HindII GTYRAC 2 cut(s) 61, 789
HindIII AAGCTT 1 cut(s) 86
HinfI GANTC 2 cut(s) 300, 527
HpaI GTTAAC 1 cut(s) 61
HpaII CCGG 9 cut(s) 353, 380, 440, 505, 524, 552, 813, 872, 910
HphI GGTGA 2 cut(s) 268, 591
Hpy166II GTNNAC 3 cut(s) 61, 157, 789
Hpy188I TCNGA 4 cut(s) 123, 405, 548, 836
Hpy188III TCNNGA 3 cut(s) 70, 166, 538
Hpy8I GTNNAC 3 cut(s) 61, 157, 789
Hpy99I CGWCG 1 cut(s) 968
HpyAV CCTTC 2 cut(s) 330, 455
HpyCH4III ACNGT 4 cut(s) 315, 535, 673, 859
HpyCH4IV ACGT 2 cut(s) 744, 966
HpyCH4V TGCA 6 cut(s) 182, 262, 309, 327, 412, 590
HpyF10VI GCNNNNNNNGC 6 cut(s) 315, 324, 587, 800, 825, 982
HpyF3I CTNAG 1 cut(s) 24
HpySE526I ACGT 2 cut(s) 744, 966
HspAI GCGC 1 cut(s) 647
KroI GCCGGC 1 cut(s) 551
KroNI GCCGGC 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 540
KspAI GTTAAC 1 cut(s) 61
Kzo9I GATC 7 cut(s) 72, 123, 231, 277, 421, 540, 960
LmnI GCTCC 2 cut(s) 441, 548
Lsp1109I GCAGC 5 cut(s) 7, 293, 568, 862, 865
LweI GCATC 3 cut(s) 249, 271, 421
MaeI CTAG 1 cut(s) 638
MaeII ACGT 2 cut(s) 744, 966
MaeIII GTNAC 1 cut(s) 597
MalI GATC 7 cut(s) 74, 125, 233, 279, 423, 542, 962
MbiI CCGCTC 1 cut(s) 976
MboI GATC 7 cut(s) 72, 123, 231, 277, 421, 540, 960
MboII GAAGA 2 cut(s) 970, 1028
MflI RGATCY 2 cut(s) 72, 421
MhlI GDGCHC 2 cut(s) 480, 1039
MlsI TGGCCA 1 cut(s) 216
MluCI AATT 4 cut(s) 210, 606, 711, 903
MluNI TGGCCA 1 cut(s) 216
MmeI TCCRAC 4 cut(s) 100, 765, 814, 880
Mox20I TGGCCA 1 cut(s) 216
Mph1103I ATGCAT 1 cut(s) 264
MroNI GCCGGC 1 cut(s) 551
MscI TGGCCA 1 cut(s) 216
MseI TTAA 7 cut(s) 60, 195, 432, 723, 774, 999, 1056
MslI CAYNNNNRTG 1 cut(s) 222
Msp20I TGGCCA 1 cut(s) 216
MspA1I CMGCKG 1 cut(s) 306
MspI CCGG 9 cut(s) 353, 380, 440, 505, 524, 552, 813, 872, 910
MspR9I CCNGG 5 cut(s) 297, 353, 440, 813, 883
MvaI CCWGG 2 cut(s) 297, 883
MwoI GCNNNNNNNGC 6 cut(s) 315, 324, 587, 800, 825, 982
NaeI GCCGGC 1 cut(s) 553
NciI CCSGG 3 cut(s) 353, 440, 813
NcoI CCATGG 1 cut(s) 642
NdeII GATC 7 cut(s) 72, 123, 231, 277, 421, 540, 960
NgoMIV GCCGGC 1 cut(s) 551
NlaIV GGNNCC 8 cut(s) 104, 250, 317, 391, 522, 550, 556, 802
NmeAIII GCCGAG 1 cut(s) 277
NmuCI GTSAC 1 cut(s) 597
NsiI ATGCAT 1 cut(s) 264
PaeR7I CTCGAG 1 cut(s) 938
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PdiI GCCGGC 1 cut(s) 553
PfeI GAWTC 2 cut(s) 300, 527
PflFI GACNNNGTC 1 cut(s) 671
PfoI TCCNGGA 1 cut(s) 438
PkrI GCNGC 7 cut(s) 22, 308, 583, 818, 877, 880, 975
Ple19I CGATCG 1 cut(s) 280
PshAI GACNNNNGTC 1 cut(s) 633
Psp6I CCWGG 2 cut(s) 295, 881
PspEI GGTNACC 1 cut(s) 597
PspFI CCCAGC 1 cut(s) 227
PspGI CCWGG 2 cut(s) 295, 881
PspN4I GGNNCC 8 cut(s) 104, 250, 317, 391, 522, 550, 556, 802
PspPI GGNCC 4 cut(s) 103, 249, 521, 554
PspXI VCTCGAGB 1 cut(s) 938
PsuI RGATCY 2 cut(s) 72, 421
PsyI GACNNNGTC 1 cut(s) 671
PvuI CGATCG 1 cut(s) 280
PvuII CAGCTG 1 cut(s) 306
RsaI GTAC 2 cut(s) 341, 914
RsaNI GTAC 2 cut(s) 340, 913
RseI CAYNNNNRTG 1 cut(s) 222
SaqAI TTAA 7 cut(s) 60, 195, 432, 723, 774, 999, 1056
SatI GCNGC 7 cut(s) 21, 307, 582, 817, 876, 879, 974
Sau3AI GATC 7 cut(s) 72, 123, 231, 277, 421, 540, 960
Sau96I GGNCC 4 cut(s) 103, 249, 521, 554
ScrFI CCNGG 5 cut(s) 297, 353, 440, 813, 883
SduI GDGCHC 2 cut(s) 480, 1039
SfaNI GCATC 3 cut(s) 249, 271, 421
Sfr274I CTCGAG 1 cut(s) 938
SinI GGWCC 2 cut(s) 103, 521
SlaI CTCGAG 1 cut(s) 938
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 3 cut(s) 164, 481, 938
SmoI CTYRAG 3 cut(s) 164, 481, 938
Sse9I AATT 4 cut(s) 210, 606, 711, 903
SsiI CCGC 4 cut(s) 419, 816, 974, 988
SspMI CTAG 1 cut(s) 638
StyD4I CCNGG 5 cut(s) 295, 351, 438, 811, 881
StyI CCWWGG 2 cut(s) 393, 642
TaaI ACNGT 4 cut(s) 315, 535, 673, 859
TaiI ACGT 2 cut(s) 747, 969
TaqI TCGA 5 cut(s) 115, 683, 759, 939, 963
TaqII GACCGA 1 cut(s) 551
TasI AATT 4 cut(s) 210, 606, 711, 903
TauI GCSGC 2 cut(s) 819, 976
TfiI GAWTC 2 cut(s) 300, 527
Tru1I TTAA 7 cut(s) 60, 195, 432, 723, 774, 999, 1056
Tru9I TTAA 7 cut(s) 60, 195, 432, 723, 774, 999, 1056
TscAI CASTG 4 cut(s) 100, 329, 676, 1039
TseFI GTSAC 1 cut(s) 597
TseI GCWGC 5 cut(s) 20, 306, 581, 875, 878
Tsp45I GTSAC 1 cut(s) 597
TspDTI ATGAA 6 cut(s) 188, 374, 374, 485, 723, 749
TspRI CASTG 4 cut(s) 100, 329, 676, 1039
Tth111I GACNNNGTC 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 103, 521
XapI RAATTY 1 cut(s) 903
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XhoI CTCGAG 1 cut(s) 938
XspI CTAG 1 cut(s) 638
Zsp2I ATGCAT 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.