Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001681

Physical Location & Seq

Genomic Coordinates Reverse (-)

65516534 .. 65523793

Gene Structure 7260 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG385100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGGAGAACATGGCTGCTTGGCTTGTTGGTATCAACAACCTCAAGATTCAACCTTTCAAGCTCCCTGATCTTGGGAGCATACCACAAACGAACCCCTTATTGAAAACAGTTTTTTCAGGTTCTTTTGCTACCATGTTATTTTCTGGAGTGGCTATTTACTTGAAATTGATTTACGCACTGATAAAAGTGGCCATGAGATCTGCAAAATCTATAGTTAAAGAGCCAATGGTAATTGGGCATGAGTGTGCCGGGATCATAGAGGAAGTTGGGGCTGAGGTGAAGCATCTGGTGCCTGGTGACCGTGTGGCACTAGAGCCCGGTATCAGTTGCTGGCGGTGTGAGTTCTGCAAAGAAGGTCGATACAATCTATGCCCGGATATGAAGTTTTTCGCCACTCCACTGGTTCATGGTTCACTGGCAAACCAGGTTCTCCATCCTGAAGACCTGTGTTTTAAACTGCCAGAGAATGTGAGTTTGGAGGAAGGGGGCAATGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003939 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0008150 GO:0008152 GO:0009506 GO:0016491 GO:0016614 GO:0016616 GO:0030054 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00040 ko00051 ko01100 map00040 map00051 map01100

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

166

Amino Acids

18.25

Weight (kDa)

5.8

Isoelectric Point (pI)

27.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	71 - 156	8.2e-21	Alcohol dehydrogenase GroES-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001681)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G51970 AT5G51970
fragaria_vesca	FvH4_7g28870 FvH4_7g28870
malus_domestica	MD00G1005600.v1.1 MD00G1005700.v1.1 MD01G1110100.v1.1 MD01G1194600.v1.1 MD01G1194700.v1.1 MD01G1195200.v1.1 MD01G1195300.v1.1 MD01G1195400.v1.1 MD01G1195500.v1.1 MD07G1261900.v1.1 MD07G1262100.v1.1 MD07G1262300.v1.1
prunus_persica	Prupe.2G288800_v2.0.a1 Prupe.2G288800_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.4G240300_v2.0.a1 Prupe.8G142900_v2.0.a1 Prupe.8G143000_v2.0.a1
pyrus_communis	pycom01g13720 pycom01g20540 pycom01g20550 pycom01g20560 pycom01g20580 pycom01g20600 pycom01g20610 pycom07g24070 pycom07g24080 pycom07g24090 pycom07g24100 pycom07g24130
rosa_chinensis	RchiOBHm_Chr1g0376551
rosa_laevigata	RLG00000026602
rosa_multiflora	Rmu_sc0001308.1_g000011 Rmu_sc0005594.1_g000014
rosa_roxburghii	Rroxscaffold_4G00282010 Rroxscaffold_4G00282130
rosa_rugosa	Rorug01G0396500
rosa_samantha	Rh1AG407600 Rh1AG412800 Rh1BG372300 Rh1CG385100 Rh1CG386100 Rh1DG402100 Rh1DG403200
rosa_wichuraiana	Rw1G036180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	292
AciI	CCGC	1 cut(s)	337
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	1 cut(s)	192
AcuI	CTGAAG	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	53, 61, 106, 166
AjnI	CCWGG	2 cut(s)	295, 426
AjuI	GAANNNNNNNTTGG	2 cut(s)	461, 493
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	333
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	389
AsuC2I	CCSGG	3 cut(s)	253, 321, 377
AsuHPI	GGTGA	2 cut(s)	292, 311
BalI	TGGCCA	1 cut(s)	194
BanI	GGYRCC	1 cut(s)	292
BanII	GRGCYC	1 cut(s)	321
BbsI	GAAGAC	1 cut(s)	450
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	444
BciT130I	CCWGG	2 cut(s)	297, 428
BcnI	CCSGG	3 cut(s)	253, 321, 377
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	213
BglII	AGATCT	1 cut(s)	200
BisI	GCNGC	1 cut(s)	18
BlsI	GCNGC	1 cut(s)	19
Bme1390I	CCNGG	5 cut(s)	253, 297, 321, 377, 428
BmiI	GGNNCC	1 cut(s)	294
BmrFI	CCNGG	5 cut(s)	253, 297, 321, 377, 428
BmsI	GCATC	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	29
BpuMI	CCSGG	3 cut(s)	253, 321, 377
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse1I	ACTGG	2 cut(s)	408, 423
Bse3DI	GCAATG	1 cut(s)	499
BseBI	CCWGG	2 cut(s)	297, 428
BseGI	GGATG	1 cut(s)	436
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	267
BseNI	ACTGG	2 cut(s)	408, 423
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	4
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	292
BsiSI	CCGG	3 cut(s)	252, 321, 377
BslI	CCNNNNNNNGG	1 cut(s)	74
BsnI	GGCC	1 cut(s)	194
Bsp1286I	GDGCHC	1 cut(s)	321
Bsp143I	GATC	3 cut(s)	70, 200, 255
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	1 cut(s)	263
BspT107I	GGYRCC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	499
BsrI	ACTGG	2 cut(s)	408, 423
BssMI	GATC	3 cut(s)	70, 200, 255
Bst2UI	CCWGG	2 cut(s)	297, 428
Bst4CI	ACNGT	2 cut(s)	112, 305
BstAPI	GCANNNNNTGC	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	335
BstDEI	CTNAG	1 cut(s)	276
BstEII	GGTNACC	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	3 cut(s)	73, 203, 258
BstMBI	GATC	3 cut(s)	70, 200, 255
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstNI	CCWGG	2 cut(s)	297, 428
BstPI	GGTNACC	1 cut(s)	299
BstSCI	CCNGG	5 cut(s)	251, 295, 319, 375, 426
BstSFI	CTRYAG	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	450
BstX2I	RGATCY	1 cut(s)	200
BstXI	CCANNNNNNTGG	1 cut(s)	403
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	436
BtsIMutI	CAGTG	3 cut(s)	179, 401, 416
Cac8I	GCNNGC	1 cut(s)	335
CaiI	CAGNNNCTG	1 cut(s)	333
CsiI	ACCWGGT	1 cut(s)	426
CviAII	CATG	5 cut(s)	13, 136, 196, 242, 410
CviJI	RGCY	8 cut(s)	17, 25, 64, 155, 194, 226, 275, 319
CviKI_1	RGCY	8 cut(s)	17, 25, 64, 155, 194, 226, 275, 319
DdeI	CTNAG	1 cut(s)	276
DpnI	GATC	3 cut(s)	72, 202, 257
DpnII	GATC	3 cut(s)	70, 200, 255
DraI	TTTAAA	1 cut(s)	457
EaeI	YGGCCR	1 cut(s)	192
Eco24I	GRGCYC	1 cut(s)	321
Eco57I	CTGAAG	1 cut(s)	462
Eco91I	GGTNACC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	299
EcoRII	CCWGG	2 cut(s)	295, 426
EcoT38I	GRGCYC	1 cut(s)	321
FaeI	CATG	5 cut(s)	16, 139, 199, 245, 413
FatI	CATG	5 cut(s)	12, 135, 195, 241, 409
Fnu4HI	GCNGC	1 cut(s)	18
FokI	GGATG	1 cut(s)	423
FriOI	GRGCYC	1 cut(s)	321
Fsp4HI	GCNGC	1 cut(s)	18
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	1 cut(s)	18
GsuI	CTGGAG	1 cut(s)	168
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	3 cut(s)	252, 321, 377
Hin1II	CATG	5 cut(s)	16, 139, 199, 245, 413
HinfI	GANTC	1 cut(s)	49
HpaII	CCGG	3 cut(s)	252, 321, 377
HphI	GGTGA	2 cut(s)	292, 311
Hpy166II	GTNNAC	1 cut(s)	416
Hpy188III	TCNNGA	3 cut(s)	46, 147, 440
Hpy8I	GTNNAC	1 cut(s)	416
HpyAV	CCTTC	2 cut(s)	350, 479
HpyCH4III	ACNGT	2 cut(s)	112, 305
HpyCH4V	TGCA	2 cut(s)	206, 351
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
HpyF3I	CTNAG	1 cut(s)	276
Hsp92II	CATG	5 cut(s)	16, 139, 199, 245, 413
Kzo9I	GATC	3 cut(s)	70, 200, 255
LmnI	GCTCC	2 cut(s)	69, 78
Lsp1109I	GCAGC	1 cut(s)	4
LweI	GCATC	1 cut(s)	295
MabI	ACCWGGT	1 cut(s)	426
MaeI	CTAG	1 cut(s)	314
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	3 cut(s)	72, 202, 257
MboI	GATC	3 cut(s)	70, 200, 255
MboII	GAAGA	1 cut(s)	455
MflI	RGATCY	1 cut(s)	200
MhlI	GDGCHC	1 cut(s)	321
MlsI	TGGCCA	1 cut(s)	194
MluCI	AATT	2 cut(s)	167, 234
MluNI	TGGCCA	1 cut(s)	194
MnlI	CCTC	4 cut(s)	53, 256, 271, 475
Mox20I	TGGCCA	1 cut(s)	194
MroXI	GAANNNNTTC	1 cut(s)	389
MscI	TGGCCA	1 cut(s)	194
MseI	TTAA	2 cut(s)	219, 456
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	194
MspI	CCGG	3 cut(s)	252, 321, 377
MspR9I	CCNGG	5 cut(s)	253, 297, 321, 377, 428
MvaI	CCWGG	2 cut(s)	297, 428
MwoI	GCNNNNNNNGC	1 cut(s)	292
NciI	CCSGG	3 cut(s)	253, 321, 377
NdeII	GATC	3 cut(s)	70, 200, 255
NlaIII	CATG	5 cut(s)	16, 139, 199, 245, 413
NlaIV	GGNNCC	1 cut(s)	294
NmuCI	GTSAC	1 cut(s)	299
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	19
Psp6I	CCWGG	2 cut(s)	295, 426
PspEI	GGTNACC	1 cut(s)	299
PspGI	CCWGG	2 cut(s)	295, 426
PspN4I	GGNNCC	1 cut(s)	294
PstNI	CAGNNNCTG	1 cut(s)	333
PsuI	RGATCY	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	219, 456
SatI	GCNGC	1 cut(s)	18
Sau3AI	GATC	3 cut(s)	70, 200, 255
ScrFI	CCNGG	5 cut(s)	253, 297, 321, 377, 428
SduI	GDGCHC	1 cut(s)	321
SetI	ASST	8 cut(s)	45, 58, 66, 124, 282, 361, 432, 450
SexAI	ACCWGGT	1 cut(s)	426
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	1 cut(s)	213
SmiMI	CAYNNNNRTG	1 cut(s)	246
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	2 cut(s)	167, 234
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	5 cut(s)	251, 295, 319, 375, 426
TaaI	ACNGT	2 cut(s)	112, 305
TaqI	TCGA	1 cut(s)	361
TasI	AATT	2 cut(s)	167, 234
TfiI	GAWTC	1 cut(s)	49
Tru1I	TTAA	2 cut(s)	219, 456
Tru9I	TTAA	2 cut(s)	219, 456
TscAI	CASTG	3 cut(s)	186, 408, 423
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	2 cut(s)	398, 398
TspRI	CASTG	3 cut(s)	186, 408, 423
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.